void VolumeMaxCLProcessor::executeVolumeOperation(const Volume* volume,
const VolumeCLBase* volumeCL,
VolumeCLBase* volumeOutCL, const size3_t& outDim,
const size3_t& globalWorkGroupSize,
const size3_t& localWorkgroupSize) {
cl::Event events[2];
try {
BufferCL* tmpVolumeCL;
int argIndex = 0;
kernel_->setArg(argIndex++, *volumeCL);
kernel_->setArg(argIndex++,
*(volumeCL->getVolumeStruct(volume)
.getRepresentation<BufferCL>())); // Scaling for 12-bit data
if (supportsVolumeWrite_) {
kernel_->setArg(argIndex++, *volumeOutCL);
} else {
size_t outDimFlattened = outDim.x * outDim.y * outDim.z;
if (tmpVolume_ == nullptr || tmpVolume_->getSize() != outDimFlattened) {
delete tmpVolume_;
tmpVolume_ = new Buffer<unsigned char>(outDimFlattened);
}
tmpVolumeCL = tmpVolume_->getEditableRepresentation<BufferCL>();
kernel_->setArg(argIndex++, *tmpVolumeCL);
}
kernel_->setArg(argIndex++, ivec4(outDim, 0));
kernel_->setArg(argIndex++, ivec4(volumeRegionSize_.get()));
OpenCL::getPtr()->getQueue().enqueueNDRangeKernel(
*kernel_, cl::NullRange, globalWorkGroupSize, localWorkgroupSize, nullptr, &events[0]);
if (!supportsVolumeWrite_) {
std::vector<cl::Event> waitFor(1, events[0]);
OpenCL::getPtr()->getQueue().enqueueCopyBufferToImage(
tmpVolumeCL->get(), volumeOutCL->getEditable(), 0, size3_t(0), size3_t(outDim),
&waitFor, &events[1]);
}
} catch (cl::Error& err) {
LogError(getCLErrorString(err));
}
#if IVW_PROFILING
try {
if (supportsVolumeWrite_) {
events[0].wait();
LogInfo("Exec time: " << events[0].getElapsedTime() << " ms");
} else {
// Measure both computation and copy (only need to wait for copy)
events[1].wait();
LogInfo("Exec time (computation, copy): "
<< events[0].getElapsedTime() << " + " << events[1].getElapsedTime() << " = "
<< events[0].getElapsedTime() + events[1].getElapsedTime() << " ms");
}
} catch (cl::Error& err) {
LogError(getCLErrorString(err));
}
#endif
}
void LightVolumeGL::volumeSizeOptionChanged() {
if (inport_.hasData()) {
if ((inport_.getData()->getDimensions()/size3_t(volumeSizeOption_.get())) != volumeDimOut_) {
internalVolumesInvalid_ = true;
}
}
}
const HistogramContainer* TransferFunctionEditorView::getNormalizedHistograms() {
if (volumeInport_ && volumeInport_->hasData()) {
const VolumeRAM* volumeRAM = volumeInport_->getData()->getRepresentation<VolumeRAM>();
if (volumeRAM) {
if (volumeRAM->hasHistograms()) return volumeRAM->getHistograms(2048, size3_t(1));
else if (!histogramTheadWorking_) {
histogramTheadWorking_ = true;
workerThread_ = new QThread();
worker_ = new HistogramWorkerQt(volumeRAM, 2048);
worker_->moveToThread(workerThread_);
connect(workerThread_, SIGNAL(started()), worker_, SLOT(process()));
connect(worker_, SIGNAL(finished()), workerThread_, SLOT(quit()));
connect(workerThread_, SIGNAL(finished()), this, SLOT(histogramThreadFinished()));
// clean up objects
connect(worker_, SIGNAL(finished()), worker_, SLOT(deleteLater()));
connect(workerThread_, SIGNAL(finished()), workerThread_, SLOT(deleteLater()));
workerThread_->start();
}
}
}
return nullptr;
}
VolumeSubset::VolumeSubset() : Processor()
, inport_("volume.inport")
, outport_("volume.outport")
, enabled_("enabled", "Enable Operation", true)
, adjustBasisAndOffset_("adjustBasisAndOffset", "Adjust Basis and Offset", true)
, rangeX_("rangeX", "X Slices", 0, 256, 0, 256, 1, 1)
, rangeY_("rangeY", "Y Slices", 0, 256, 0, 256, 1, 1)
, rangeZ_("rangeZ", "Z Slices", 0, 256, 0, 256, 1, 1)
{
addPort(inport_);
addPort(outport_);
addProperty(enabled_);
addProperty(adjustBasisAndOffset_);
addProperty(rangeX_);
addProperty(rangeY_);
addProperty(rangeZ_);
dims_ = size3_t(1,1,1);
// Since the ranges depend on the input volume dimensions, we make sure to always
// serialize them so we can do a proper renormalization when we load new data.
rangeX_.setSerializationMode(PropertySerializationMode::ALL);
rangeY_.setSerializationMode(PropertySerializationMode::ALL);
rangeZ_.setSerializationMode(PropertySerializationMode::ALL);
inport_.onChange(this, &VolumeSubset::onVolumeChange);
}
void VolumeSubset::process() {
if (enabled_.get()) {
const VolumeRAM* vol = inport_.getData()->getRepresentation<VolumeRAM>();
size3_t dim = size3_t(static_cast<unsigned int>(rangeX_.get().y),
static_cast<unsigned int>(rangeY_.get().y),
static_cast<unsigned int>(rangeZ_.get().y));
size3_t offset = size3_t(static_cast<unsigned int>(rangeX_.get().x),
static_cast<unsigned int>(rangeY_.get().x),
static_cast<unsigned int>(rangeZ_.get().x));
dim -= offset;
if (dim == dims_)
outport_.setData(inport_.getData());
else {
Volume* volume = new Volume(VolumeRAMSubSet::apply(vol, dim, offset));
// pass meta data on
volume->copyMetaDataFrom(*inport_.getData());
volume->dataMap_ = inport_.getData()->dataMap_;
if (adjustBasisAndOffset_.get()) {
vec3 volOffset = inport_.getData()->getOffset();
mat3 volBasis = inport_.getData()->getBasis();
const vec3 newOffset =
volOffset + volBasis * (static_cast<vec3>(offset) / static_cast<vec3>(dims_));
mat3 newBasis = volBasis;
vec3 dimRatio = (static_cast<vec3>(dim) / static_cast<vec3>(dims_));
newBasis[0] *= dimRatio[0];
newBasis[1] *= dimRatio[1];
newBasis[2] *= dimRatio[2];
volume->setBasis(newBasis);
volume->setOffset(newOffset);
} else {
// copy basis and offset
volume->setModelMatrix(inport_.getData()->getModelMatrix());
}
outport_.setData(volume);
}
} else {
outport_.setData(inport_.getData());
}
}
IvfVolumeReader::IvfVolumeReader()
: DataReaderType<Volume>()
, rawFile_("")
, filePos_(0)
, littleEndian_(true)
, dimensions_(size3_t(0))
, format_(nullptr) {
addExtension(FileExtension("ivf", "Inviwo ivf file format"));
}
void CubeProxyGeometry::onVolumeChange() {
// Update to the new dimensions.
auto dims = inport_.getData()->getDimensions();
if (dims != size3_t(clipX_.getRangeMax(), clipY_.getRangeMax(), clipZ_.getRangeMax())) {
NetworkLock lock(this);
clipX_.setRangeNormalized(ivec2(0, dims.x));
clipY_.setRangeNormalized(ivec2(0, dims.y));
clipZ_.setRangeNormalized(ivec2(0, dims.z));
// set the new dimensions to default if we were to press reset
clipX_.setCurrentStateAsDefault();
clipY_.setCurrentStateAsDefault();
clipZ_.setCurrentStateAsDefault();
}
}
void* dispatch(void* dst, const char* filePath, size3_t& dimensions, DataFormatId& formatId,
const DataFormatBase* dataFormat) {
CImg<typename T::primitive> img(filePath);
size_t components = static_cast<size_t>(img.spectrum());
dimensions = size3_t(img.width(), img.height(), img.depth());
const DataFormatBase* loadedDataFormat = DataFormatBase::get(
dataFormat->getNumericType(), components, sizeof(typename T::primitive) * 8);
if (loadedDataFormat)
formatId = loadedDataFormat->getId();
else
throw Exception("CImgLoadVolumeDispatcher, could not find proper data type");
// Image is up-side-down
img.mirror('y');
return CImgToVoidConvert<typename T::primitive>::convert(dst, &img);
}
size3_t getGlobalWorkGroupSize(size3_t nItems, glm::size3_t localWorkGroupSize)
{
return localWorkGroupSize*size3_t(glm::ceil(vec3(nItems) / vec3(localWorkGroupSize)));
}
void HistogramWorkerQt::process() {
volumeRAM_->calculateHistograms(numBins_, size3_t(1), stop);
emit finished();
}
std::shared_ptr<Volume> curlVolume(std::shared_ptr<const Volume> volume) {
auto newVolume = std::make_shared<Volume>(volume->getDimensions(), DataVec3Float32::get());
newVolume->setModelMatrix(volume->getModelMatrix());
newVolume->setWorldMatrix(volume->getWorldMatrix());
newVolume->dataMap_ = volume->dataMap_;
auto m = newVolume->getCoordinateTransformer().getDataToWorldMatrix();
auto a = m * vec4(0, 0, 0, 1);
auto b = m * vec4(1.0f / vec3(volume->getDimensions() - size3_t(1)), 1);
auto spacing = b - a;
vec3 ox = vec3(spacing.x, 0, 0);
vec3 oy = vec3(0, spacing.y, 0);
vec3 oz = vec3(0, 0, spacing.z);
VolumeDoubleSampler<4> sampler(volume);
auto worldSpace = VolumeDoubleSampler<3>::Space::World;
util::IndexMapper3D index(volume->getDimensions());
auto data = static_cast<vec3*>(newVolume->getEditableRepresentation<VolumeRAM>()->getData());
float minV = std::numeric_limits<float>::max(), maxV = std::numeric_limits<float>::lowest();
std::function<void(const size3_t&)> func = [&](const size3_t& pos) {
vec3 world = (m * vec4(vec3(pos) / vec3(volume->getDimensions() - size3_t(1)), 1)).xyz();
auto Fx =
(sampler.sample(world + ox, worldSpace) - sampler.sample(world - ox, worldSpace)) /
(2.0 * spacing.x);
auto Fy =
(sampler.sample(world + oy, worldSpace) - sampler.sample(world - oy, worldSpace)) /
(2.0 * spacing.y);
auto Fz =
(sampler.sample(world + oz, worldSpace) - sampler.sample(world - oz, worldSpace)) /
(2.0 * spacing.z);
vec3 c;
c.x = static_cast<float>(Fy.z - Fz.y);
c.y = static_cast<float>(Fz.x - Fx.z);
c.z = static_cast<float>(Fx.y - Fy.x);
minV = std::min(minV, c.x);
minV = std::min(minV, c.y);
minV = std::min(minV, c.z);
maxV = std::max(maxV, c.x);
maxV = std::max(maxV, c.y);
maxV = std::max(maxV, c.z);
data[index(pos)] = c;
};
util::forEachVoxel(*volume->getRepresentation<VolumeRAM>(), func);
auto range = std::max(std::abs(minV), std::abs(maxV));
newVolume->dataMap_.dataRange = dvec2(-range, range);
newVolume->dataMap_.valueRange = dvec2(minV, maxV);
return newVolume;
}