T FromStringTo(const CharType* sz)
{
std::basic_stringstream<CharType> sstrm(sz);
T v;
sstrm >> v;
return v;
}
std::pair<int32_t, int32_t> getIndelRange() const
{
assert(m_dataPtr);
uint8_t *qv_aux = bam_aux_get(m_dataPtr.get(), "XW");
int start = INDEL_NO_RANGE;
int end = INDEL_NO_RANGE;
char underscore;
if (qv_aux)
{
std::istringstream sstrm(bam_aux2Z(qv_aux));
sstrm >> start;
sstrm >> underscore;
sstrm >> end;
}
return std::pair<int, int>(start, end);
}
bool BezierParser::ParseLine(const std::string& line)
{
// if line starts with #, return true
// if line is empty, skip
if(line.empty())
{
::OutputDebugString("Empty\n");
return true;
}
int firstNonWhitespace = line.find_first_not_of(" \t\n\r");
int lastNonWhitespace = line.find_last_not_of(" \t\n\r");
if(-1 == firstNonWhitespace)
{
::OutputDebugString("Whitespace\n");
return true;
}
// prepare a trimmed line
std::string line_trim = line.substr(firstNonWhitespace, (lastNonWhitespace+1) - firstNonWhitespace);
if(line_trim[0]=='#')
{
::OutputDebugString("#\n");
return true;
}
if(ParseStateNone == m_state)
{
// look for number
int int_val = -1;
std::stringstream sstrm(line_trim);
// try to parse the number
bool success = sstrm >> int_val;
if(!success)
{ return false; }
// record the integer value (not sure what it's for yet)
m_intval = int_val;
// advance the state
m_state = ParseStateFoundNumber;
// the number should be on its own line, so quit once we've found it; ignore everything else.
return true;
}
