/* clone a node */
stTree *stTree_cloneNode(stTree *node) {
stTree *node2 = stTree_construct();
stTree_setBranchLength(node2, stTree_getBranchLength(node));
stTree_setClientData(node2, stTree_getClientData(node));
stTree_setLabel(node2, stTree_getLabel(node));
return node2;
}
/* get malnComp for a node, or NULL */
static struct malnComp *getNodeComp(stTree *node) {
struct mafTreeNodeCompLink *ncLink = stTree_getClientData(node);
if (ncLink == NULL) {
return NULL;
} else {
return ncLink->comp;
}
}
/* add genome object from client data */
static struct Genome *speciesTreeGetGenome(stTree *speciesNode) {
return stTree_getClientData(speciesNode);
}
/* get mafTreeNodeCompLink for a node */
static struct mafTreeNodeCompLink *getNodeCompLink(stTree *node) {
return stTree_getClientData(node);
}