// Decodes your encoded data to tree.
TreeNode* deserialize(string data) {
vector<string> vec;
string tmp; for (auto x : data) {
if (x == '|') {
vec.push_back(tmp);
tmp = "";
} else {
tmp += x;
}
}
int vsize=vec.size(); TreeNode dummy(0);
queue<TreeNode*> q; q.push(&dummy);
for (int i=0; i < vsize; ) {
TreeNode *ptr = q.front(); q.pop();
if (ptr) {
tmp = vec[i++];
if (tmp != "null") {
int val = str2num(tmp);
ptr->left = new TreeNode(val);
q.push(ptr->left);
}
tmp = vec[i++];
if (tmp != "null") {
int val = str2num(tmp);
ptr->right = new TreeNode(val);
q.push(ptr->right);
}
}
}
return dummy.right;
}
/* read sp3 header -----------------------------------------------------------*/
static int readsp3h(FILE *fp, gtime_t *time, char *type, int *sats,
double *bfact, char *tsys)
{
int i,j,k=0,ns=0,sys,prn;
char buff[1024];
trace(3,"readsp3h:\n");
for (i=0;i<22;i++) {
if (!fgets(buff,sizeof(buff),fp)) break;
if (i==0) {
*type=buff[2];
if (str2time(buff,3,28,time)) return 0;
}
else if (2<=i&&i<=6) {
if (i==2) {
ns=(int)str2num(buff,4,2);
}
for (j=0;j<17&&k<ns;j++) {
sys=code2sys(buff[9+3*j]);
prn=(int)str2num(buff,10+3*j,2);
if (k<MAXSAT) sats[k++]=satno(sys,prn);
}
}
else if (i==12) {
strncpy(tsys,buff+9,3); tsys[3]='\0';
}
else if (i==14) {
bfact[0]=str2num(buff, 3,10);
bfact[1]=str2num(buff,14,12);
}
}
return ns;
}
/* read ionex dcb aux data ----------------------------------------------------*/
static void readionexdcb(FILE *fp, double *dcb, double *rms)
{
int i,sat;
char buff[1024],id[32],*label;
trace(3,"readionexdcb:\n");
for (i=0;i<MAXSAT;i++) dcb[i]=rms[i]=0.0;
while (fgets(buff,sizeof(buff),fp)) {
if (strlen(buff)<60) continue;
label=buff+60;
if (strstr(label,"PRN / BIAS / RMS")==label) {
strncpy(id,buff+3,3); id[3]='\0';
if (!(sat=satid2no(id))) {
trace(2,"ionex invalid satellite: %s\n",id);
continue;
}
dcb[sat-1]=str2num(buff, 6,10);
rms[sat-1]=str2num(buff,16,10);
}
else if (strstr(label,"END OF AUX DATA")==label) break;
}
}
/*!
\brief fills an integer array with tokens extracted from a string
\author Xanathar
\return int the number of number read from the string
\param str the string
\param array the array
\param maxsize the size of array
\param defval -1 -> the default value for uninitialized items
\param base the base for number conversion
\deprecated This is part of the old XSS stuff.
*/
int fillIntArray(char* str, int *array, int maxsize, int defval, int base)
{
int i=0;
char tmp[1048];
char *mem;
if (strlen(str) > 1024) {
mem = new char[strlen(str)+5];
} else mem = tmp; //xan -> we avoid dyna-alloc for strs < 1K
strcpy(tmp, str);
char *s;
char *delimiter = " ";
if (base != baseInArray) for (i = 0; i < maxsize; i++) array[i] = defval;
i = 0;
s = strtok(tmp,delimiter);
while ((s!=NULL)&&(i < maxsize)) {
if (base == baseInArray) {
array[i] = str2num(s, array[i]);
i++;
}
else {
array[i++] = str2num(s, base);
}
s = strtok(NULL, delimiter);
}
if (mem != tmp) safedeletearray(mem);
return i;
}
// read station position data -----------------------------------------------
void __fastcall TPlot::ReadStaPos(const char *file, const char *sta,
double *rr)
{
FILE *fp;
char buff[256],code[256],name[256];
double pos[3];
int sinex=0;
if (!(fp=fopen(file,"r"))) return;
while (fgets(buff,sizeof(buff),fp)) {
if (strstr(buff,"%=SNX")==buff) sinex=1;
if (buff[0]=='%'||buff[1]=='#') continue;
if (sinex) {
if (strlen(buff)<68||strncmp(buff+14,sta,4)) continue;
if (!strncmp(buff+7,"STAX",4)) rr[0]=str2num(buff,47,21);
if (!strncmp(buff+7,"STAY",4)) rr[1]=str2num(buff,47,21);
if (!strncmp(buff+7,"STAZ",4)) {
rr[2]=str2num(buff,47,21);
break;
}
}
else {
if (sscanf(buff,"%lf %lf %lf %s",pos,pos+1,pos+2,code)<4) continue;
if (strcmp(code,sta)) continue;
pos[0]*=D2R;
pos[1]*=D2R;
pos2ecef(pos,rr);
break;
}
}
fclose(fp);
}
void loadfishing()
{
unsigned long loopexit=0;
do
{
readw2();
if(!(strcmp((char*)script1,"BASE_FISHING_TIME"))) fishing_data.basetime=str2num(script2);
else if(!(strcmp((char*)script1,"RANDOM_FISHING_TIME"))) fishing_data.randomtime=str2num(script2);
}
while ( (strcmp((char*)script1, "}")) && (++loopexit < MAXLOOPS) );
}
void loadhunger() // by Magius(CHE)
{
unsigned long loopexit=0;
do
{
readw2();
if(!(strcmp((char*)script1,"HUNGERRATE"))) server_data.hungerrate=str2num(script2);
else if(!(strcmp((char*)script1,"HUNGER_DAMAGE"))) server_data.hungerdamage=str2num(script2);
else if(!(strcmp((char*)script1,"HUNGER_DAMAGE_RATE"))) server_data.hungerdamagerate=str2num(script2);
}
while ( (strcmp((char*)script1, "}")) && (++loopexit < MAXLOOPS) );
}
void loadregenerate() // by Magius(CHE)
{
unsigned long loopexit=0;
do
{
readw2();
if(!(strcmp((char*)script1,"HITPOINTS_REGENRATE"))) server_data.hitpointrate=str2num(script2);
else if(!(strcmp((char*)script1,"STAMINA_REGENRATE"))) server_data.staminarate=str2num(script2);
else if(!(strcmp((char*)script1,"MANA_REGENRATE"))) server_data.manarate=str2num(script2);
else if(!(strcmp((char*)script1,"ARMOR_AFFECT_MANA_REGEN"))) server_data.armoraffectmana=str2num(script2);
}
while ( (strcmp((char*)script1, "}")) && (++loopexit < MAXLOOPS) );
}
QList<XCursorThemeFX::tAnimSeq> XCursorThemeFX::parseScript (const QString &script, quint32 maxFrame) {
QList<tAnimSeq> res;
QString scp = script;
scp.replace("\r", "\n");
QStringList scpL = scp.split('\n', QString::SkipEmptyParts);
foreach (QString s, scpL) {
s = s.simplified();
//qDebug() << s;
QStringList fld = s.split(',', QString::SkipEmptyParts); //BUG!BUG!BUG!
if (fld.size() != 2) {
qDebug() << "script error:" << s;
qWarning() << "script error:" << s;
continue;
}
// frame[s]
int hyph = fld[0].indexOf('-');
tAnimSeq a;
if (hyph == -1) {
// just a number
if (!str2num(fld[0], a.from)) {
qDebug() << "script error (frame):" << s;
qWarning() << "script error (frame):" << s;
continue;
}
a.from = qMax(qMin(maxFrame, a.from), (quint32)1)-1;
a.to = a.from;
} else {
// a..b
if (!str2num(fld[0].left(hyph), a.from)) {
qDebug() << "script error (frame from):" << s;
qWarning() << "script error (frame from):" << s;
continue;
}
a.from = qMax(qMin(maxFrame, a.from), (quint32)1)-1;
if (!str2num(fld[0].mid(hyph+1), a.to)) {
qDebug() << "script error (frame to):" << s;
qWarning() << "script error (frame to):" << s;
continue;
}
a.to = qMax(qMin(maxFrame, a.to), (quint32)1)-1;
}
// delay
if (!str2num(fld[1], a.delay)) {
qDebug() << "script error (delay):" << s;
qWarning() << "script error (delay):" << s;
continue;
}
if (a.delay < 10) a.delay = 10;
qDebug() << "from" << a.from << "to" << a.to << "delay" << a.delay;
res << a;
}
string BinOpValue::getValue(){
string a=this->a->getValue();
string b=this->b->getValue();
if(!op.compare("+")){
try{
double x=str2num(a);
double y=str2num(b);
return num2str(x+y);
}catch(string &tx){
return a+b;
}//end try
}else if(!op.compare("-")){
TRY_NUM(-);
}else if(!op.compare("*")){
void loadbegging()
{
unsigned long loopexit=0;
do
{
readw2();
if(!(strcmp((char*)script1,"BEGGING_TIME"))) begging_data.timer=str2num(script2);
else if(!(strcmp((char*)script1,"BEGGING_RANGE"))) begging_data.range=str2num(script2);
else if(!(strcmp((char*)script1,"BEGGING_TEXT0"))) strcpy(begging_data.text[0],(char*)script2);
else if(!(strcmp((char*)script1,"BEGGING_TEXT1"))) strcpy(begging_data.text[1],(char*)script2);
else if(!(strcmp((char*)script1,"BEGGING_TEXT2"))) strcpy(begging_data.text[2],(char*)script2);
}
while ( (strcmp((char*)script1, "}")) && (++loopexit < MAXLOOPS) );
}
cable* cable::factory(const char* s)
{
cable* cbl = NULL;
int argc;
char** argv = NULL;
int addr;
if (*s == 0)
return NULL;
parse_cmdline_args(s, &argc, &argv);
if (argc == 0)
return NULL;
if (stricmp(argv[0], "xil3") == 0) {
if (argc == 1)
addr = 0x378;
else {
if (str2num(argv[1], &addr))
goto cleanup;
}
cbl = new parport((unsigned int)addr);
}
else if (stricmp(argv[0], "dusb") == 0)
cbl = new digilent;
else if (stricmp(argv[0],"znuhtag") == 0) {
int num=0;
if(argc > 1)
str2num(argv[1], &num);
cbl = new znuhtag(num);
}
else if (stricmp(argv[0],"amontec") == 0) {
int speed = 0;
if (argc > 1)
str2num(argv[1], &speed);
cbl = new amontec(speed);
}
else {
msgf(STR_INVALID_CABLE_DEF);
return NULL;
}
cleanup:
return cbl;
}
int t_extract( char * in, float * temp )
{
char re[] = "^(-?[0-9]+\\.?[0-9]*) *([cCfF])$";
size_t nmatch = 3;
regmatch_t pmatch[ nmatch ];
char * temp_type, * temp_val;
int value;
if( rematch( in, re, nmatch, pmatch ) )
{
temp_val = substring( in, pmatch[ 1 ].rm_so, pmatch[ 1 ].rm_eo - 1 ); // In order to free up at the end.
*temp = ( float )str2num( temp_val );
temp_type = substring( in, pmatch[ 2 ].rm_so, pmatch[ 2 ].rm_eo - 1 );
if( *temp_type == 'c' || *temp_type == 'C' )
value = CELS;
if( *temp_type == 'f' || *temp_type == 'F' )
value = FAHR;
}
else
{
fprintf( stderr, "t_extract: Bad temperature entry.\n" );
exit( 1 );
}
free( temp_type );
free( temp_val );
return value;
}
int cmd_erase(int argc, const char** argv)
{
cable* cbl = NULL;
int index;
chip* dev;
const char* param;
// Position
param = cmdline_get_non_opt(argc, argv, 0);
if (param == NULL || str2num(param, &index) || index <= 0)
{
msgf(STR_INVALID_PARAMETERS);
return 0;
}
cbl = open_cable(1);
if (cbl == NULL)
return 0;
dev = select_device_in_chain(index - 1);
if (dev == NULL)
return -1;
msgf(STR_ERASING, index, dev->name.c_str());
if (dev->erase(cbl) == 0)
msgf(STR_SUCCESS_COMPLETED);
close_cable(cbl);
return 0;
}
/* read dcb parameters file --------------------------------------------------*/
static int readdcbf(const char *file, nav_t *nav)
{
FILE *fp;
double cbias;
int sat,type=0;
char buff[256];
trace(3,"readdcbf: file=%s\n",file);
if (!(fp=fopen(file,"r"))) {
trace(2,"dcb parameters file open error: %s\n",file);
return 0;
}
while (fgets(buff,sizeof(buff),fp)) {
if (strstr(buff,"DIFFERENTIAL (P1-P2) CODE BIASES")) type=1;
else if (strstr(buff,"DIFFERENTIAL (P1-C1) CODE BIASES")) type=2;
else if (strstr(buff,"DIFFERENTIAL (P2-C2) CODE BIASES")) type=3;
if (!type) continue;
if (!(sat=satid2no(buff))||(cbias=str2num(buff,26,9))==0.0) continue;
nav->cbias[sat-1][type-1]=cbias*1E-9*CLIGHT; /* ns -> m */
}
fclose(fp);
return 1;
}
int cmd_idcode(int argc, const char** argv)
{
cable* cbl;
chip* dev;
int index;
const char* param;
// Position
param = cmdline_get_non_opt(argc, argv, 0);
if (param == NULL || str2num(param, &index) || index <= 0)
{
msgf(STR_INVALID_PARAMETERS);
return 0;
}
cbl = open_cable(1);
if (cbl == NULL)
return 0;
dev = select_device_in_chain(index - 1);
if (dev)
msgf(STR_DEVICE_IDCODE, index, dev->id);
close_cable(cbl);
return 0;
}
int calculate(string s) {
stack<int> vals;
stack<char> ops;
string num = "";
for (int i = 0; i < s.length(); i++) {
if (s[i] == '*' || s[i] == '/') {
while (ops.size() && (ops.top() == '*' || ops.top() == '/'))
calculateHelper(vals, ops);
ops.push(s[i]);
} else if (s[i] == '+' || s[i] == '-') {
while (ops.size() && (ops.top() == '-' || ops.top() == '*' || ops.top() == '/'))
calculateHelper(vals, ops);
ops.push(s[i]);
} else if (s[i] >= '0' && s[i] <= '9') {
num = num + s[i];
if(i == s.length() - 1 || s[i + 1] < '0' || s[i + 1] > '9') {
vals.push(str2num(num));
num = "";
}
}
}
while (ops.size())
calculateHelper(vals, ops);
return vals.top();
}
static SQInteger default_delegate_tointeger(HSQUIRRELVM v)
{
SQObjectPtr &o=stack_get(v,1);
switch(type(o)) {
case OT_STRING: {
SQObjectPtr res;
if(str2num(_stringval(o),res)) {
v->Push(SQObjectPtr(tointeger(res)));
break;
}
}
return sq_throwerror(v, _SC("cannot convert the string"));
break;
case OT_INTEGER:
case OT_FLOAT:
v->Push(SQObjectPtr(tointeger(o)));
break;
case OT_BOOL:
v->Push(SQObjectPtr(_integer(o)?(SQInteger)1:(SQInteger)0));
break;
default:
v->Push(_null_);
break;
}
return 1;
}
bool cCharStuff::cBankerAI::Withdraw(int c, P_CHAR pBanker, const string& comm)
{
P_CHAR pc_currchar = currchar[c];
int beginoffset ;
int endoffset ;
string value2 ;
int value=0 ;
if ((beginoffset=comm.find_first_of("0123456789")) != string::npos)
{
if ((endoffset=comm.find_first_not_of("0123456789",beginoffset))== string::npos)
endoffset = comm.length();
value2= comm.substr(beginoffset,endoffset-beginoffset);
value = str2num(value2) ;
}
else
value = 0 ;
if (pc_currchar->CountBankGold() >= value)
{
int goldcount = value;
addgold(c, goldcount);
goldsfx(c, goldcount);
DeleBankItem(pc_currchar, 0x0EED, 0, goldcount);
sprintf(temp, "%s here is your withdraw of %i.", pc_currchar->name.c_str(), goldcount);
npctalk(c, pBanker, temp, 1);
return true;
}
else
sprintf(temp, "%s you have insufficent funds!", pc_currchar->name.c_str());
npctalk(c, pBanker, temp, 1);
return true;
}
/**
* @param tokens The Reverse Polish Notation
* @return the value
*/
int evalRPN(vector<string>& tokens) {
// Write your code here
if(tokens.size() == 0)
return 0;
stack<int> s;
for(auto &t : tokens){
if(t == "+" || t == "-" || t == "*" || t == "/"){
int a = s.top();
s.pop();
int b = s.top();
s.pop();
if(t == "+")
s.push(b + a);
if(t == "-")
s.push(b - a);
if(t == "*")
s.push(b * a);
if(t == "/")
s.push(b / a);
}else{
s.push(str2num(t));
}
}
return s.top();
}
unsigned int handleConstants(char line[])
{
char temp[3];
if(line[0] == 'C')
return line[2];
else if(line[0] == 'X')
{
temp[0]=line[2];
temp[1]=line[3];
temp[2]='\0';
return str2num(temp,16);
}
else
{
int j = strlen(line)-1;
unsigned int objCode= 0;
int i = 0;
while(i<=j)
objCode += char2num(line[i++]) * pow(10,j--);
}
}
P_ITEM cCharStuff::AddRandomLoot(P_ITEM pBackpack, char * lootlist)
{
char sect[512];
int i,j, storeval,loopexit=0;
P_ITEM retitem = NULL;
storeval=-1;
i=0; j=0;
sprintf(sect, "LOOTLIST %s", lootlist);
Script *pScpBase=i_scripts[npc_script];
Script *pScp=pScpBase->Select(sect,custom_npc_script);
if (!pScp) return NULL;
loopexit=0;
do
{
pScp->NextLine();
if (script1[0]!='}')
{
i++; // Count number of entries on list.
}
} while ( (script1[0]!='}') && (++loopexit < MAXLOOPS) );
pScp->Close();
if(i>0)
{
i=rand()%(i);
pScp=pScpBase->Select(sect,custom_npc_script);
loopexit=0;
do
{
pScp->NextLine();
if (script1[0]!='}')
{
if(j==i)
{
storeval=str2num(script1); //script1 = ITEM#
scpMark m=pScp->Suspend();
retitem = Targ->AddMenuTarget(-1, 0, storeval);
pScp->Resume(m);
if(retitem!=NULL)
{
retitem->pos.x=50+(rand()%80);
retitem->pos.y=50+(rand()%80);
retitem->pos.z=9;
retitem->SetContSerial(pBackpack->serial);
}
break;;
}
else j++;
}
} while ( (script1[0]!='}') && (++loopexit < MAXLOOPS) );
pScp->Close();
}
return retitem;
}
/*** s: socket ***/
int cCharStuff::getRandomNPC(char * npclist)
{
//This function gets the random npc number from the list and recalls
//addrespawnnpc passing the new number
char sect[512];
unsigned int uiTempList[100];
int i=0,k=0;
sprintf(sect, "NPCLIST %s", npclist);
Script *pScpBase=i_scripts[npc_script];
Script *pScp=pScpBase->Select(sect,custom_npc_script);
if (!pScp) return 0;
unsigned long loopexit=0;
do
{
pScp->NextLine();
if (script1[0]!='}')
{
uiTempList[i]=str2num(script1);
i++;
}
}
while ( (script1[0]!='}') && (++loopexit < MAXLOOPS));
pScp->Close();
if(i>0)
{
i=rand()%(i);
k=uiTempList[i];
}
return k;
}
void loadrepsys() //Repsys
{
unsigned long loopexit=0;
do
{
readw2();
if(!(strcmp((char*)script1,"MURDER_DECAY"))) repsys.murderdecay=str2num(script2);
else if(!(strcmp((char*)script1,"MAXKILLS"))) repsys.maxkills=str2num(script2);
else if(!(strcmp((char*)script1,"CRIMINAL_TIME"))) repsys.crimtime=str2num(script2);
}
while ( (strcmp((char*)script1, "}")) && (++loopexit < MAXLOOPS) );
if (!repsys.murderdecay) repsys.murderdecay=420;
if (!repsys.maxkills) repsys.maxkills=4;
if (!repsys.crimtime) repsys.crimtime=120;
}
static int csv_read_record(TABDCA *dca, struct csv *csv)
{ /* read next record from csv data file */
int k, ret = 0;
xassert(csv->mode == 'R');
if (setjmp(csv->jump))
{ ret = 1;
goto done;
}
/* read dummy RECNO field */
if (csv->ref[0] > 0)
#if 0 /* 01/VI-2010 */
mpl_tab_set_num(dca, csv->ref[0], csv->count-1);
#else
mpl_tab_set_num(dca, csv->ref[0], csv->count-csv->nskip-1);
#endif
/* read fields */
for (k = 1; k <= csv->nf; k++)
{ read_field(csv);
if (csv->what == CSV_EOF)
{ /* end-of-file reached */
xassert(k == 1);
ret = -1;
goto done;
}
else if (csv->what == CSV_EOR)
{ /* end-of-record reached */
int lack = csv->nf - k + 1;
if (lack == 1)
xprintf("%s:%d: one field missing\n", csv->fname,
csv->count);
else
xprintf("%s:%d: %d fields missing\n", csv->fname,
csv->count, lack);
longjmp(csv->jump, 0);
}
else if (csv->what == CSV_NUM)
{ /* floating-point number */
if (csv->ref[k] > 0)
{ double num;
xassert(str2num(csv->field, &num) == 0);
mpl_tab_set_num(dca, csv->ref[k], num);
}
}
else if (csv->what == CSV_STR)
{ /* character string */
if (csv->ref[k] > 0)
mpl_tab_set_str(dca, csv->ref[k], csv->field);
}
else
xassert(csv != csv);
}
/* now there must be NL */
read_field(csv);
xassert(csv->what != CSV_EOF);
if (csv->what != CSV_EOR)
{ xprintf("%s:%d: too many fields\n", csv->fname, csv->count);
longjmp(csv->jump, 0);
}
done: return ret;
}
uint Aligner::checkBeginGreedy(const string& read, pair<kmer, uint>& overlap, vector<uNumber>& path, uint errors){
if(overlap.second==0){path.push_back(0);return 0;}
string readLeft(read.substr(0,overlap.second)),unitig;
auto rangeUnitigs(getEnd(overlap.first));
uint minMiss(errors+1),indiceMinMiss(0);
bool ended(false);
int offset(0);
kmer nextOverlap(0);
for(uint i(0); i<rangeUnitigs.size(); ++i){
unitig=(rangeUnitigs[i].first);
if(unitig.size()-k+1>=readLeft.size()){
uint miss(missmatchNumber(unitig.substr(unitig.size()-readLeft.size()-k+1,readLeft.size()),readLeft, errors));
// if(miss==0){
// path.push_back(unitig.size()-readLeft.size()-k+1);
// path.push_back(rangeUnitigs[i].second);
// return 0;
// }
if(miss<minMiss){
minMiss=miss;
indiceMinMiss=i;
ended=true;
offset=unitig.size()-readLeft.size()-k+1;
}
}else{
uint miss(missmatchNumber(unitig.substr(0,unitig.size()-k+1), readLeft.substr(readLeft.size()+k-1-unitig.size()), errors));
// if(miss==0){
// minMiss+=mapOnLeftEndGreedy(read, path, {nextOverlap,overlap.second-(nextUnitig.size()-k+1)},errors);
// if(minMiss<=errors){
// path.push_back(rangeUnitigs[indiceMinMiss].second);
// sucessML++;
// }
// }
if(miss<minMiss){
kmer overlapNum(str2num(unitig.substr(0,k-1)));
if(miss<minMiss){
ended=false;
minMiss=miss;
indiceMinMiss=i;
nextOverlap=overlapNum;
}
}
}
}
if(minMiss<=errors){
if(ended){
path.push_back(offset);
path.push_back(rangeUnitigs[indiceMinMiss].second);
return minMiss;
}
minMiss+=mapOnLeftEndGreedy(read, path, {nextOverlap,overlap.second-(rangeUnitigs[indiceMinMiss].first.size()-k+1)},errors-minMiss);
if(minMiss<=errors){
path.push_back(rangeUnitigs[indiceMinMiss].second);
sucessML++;
}
}
return minMiss;
}
errInfo newWork(const std::wstring &name, const std::wstring &info, work **ret)
{
dataBuf buf;
CURL *handle = curl_easy_init();
std::string postField = "field=work&operation=add&name=" + encode(name) + "&info=" + encode(toSingleLine(info));
std::unique_ptr<char[]> errBuf = std::make_unique<char[]>(2048);
CURLcode success;
curl_easy_setopt(handle, CURLOPT_URL, scriptURL);
curl_easy_setopt(handle, CURLOPT_ERRORBUFFER, errBuf.get());
curl_easy_setopt(handle, CURLOPT_POSTFIELDS, postField.c_str());
curl_easy_setopt(handle, CURLOPT_WRITEFUNCTION, write_data);
curl_easy_setopt(handle, CURLOPT_WRITEDATA, &buf);
success = curl_easy_perform(handle);
if (success != CURLcode::CURLE_OK)
{
curl_easy_cleanup(handle);
std::string err(errBuf.get());
return errInfo("E:network:" + err);
}
curl_easy_cleanup(handle);
size_t newID;
if (str2num(buf, newID) != 0)
return errInfo(std::string("E:Server side error:") + buf);
*ret = new work(newID, name, info);
workList.emplace(newID, *ret);
return errInfo();
}
int cmd_read(int argc, const char** argv)
{
u8* data = NULL;
cable* cbl;
const char* param;
chip* dev;
int index, length;
program_file* f = NULL;
// Position
param = cmdline_get_non_opt(argc, argv, 0);
if (param == NULL || str2num(param, &index) || index <= 0)
{
msgf(STR_INVALID_PARAMETERS);
return 0;
}
// File name
param = cmdline_get_non_opt(argc, argv, 1);
if (param == NULL)
{
msgf(STR_INVALID_PARAMETERS);
return 0;
}
cbl = open_cable(1);
if (cbl == NULL)
goto cleanup;
dev = select_device_in_chain(index - 1);
if (dev == NULL)
goto cleanup;
msgf(STR_READING, index, dev->name.c_str());
length = dev->readback(cbl, &data);
if (length <= 0 || data == NULL)
goto cleanup;
f = create_program_file(dev, argc, argv);
if (f == NULL)
goto cleanup;
if (f->save(param, data, length))
goto cleanup;
msgf(STR_SUCCESS_COMPLETED);
cleanup:
close_cable(cbl);
if (data)
free(data);
if (f)
delete f;
return 0;
}
uint Aligner::mapOnRightEndGreedy(const string &read, vector<uNumber>& path, const pair<kmer, uint>& overlap , uint errors){
// cout<<"moreg"<<endl;
string unitig,readLeft(read.substr(overlap.second)),nextUnitig;
// auto rangeUnitigs(getBeginOpti(overlap.first,path.back()));
auto rangeUnitigs(getBegin(overlap.first));
uint miniMiss(errors+1), miniMissIndice(9);
bool ended(false);
// int offset(0);
kmer nextOverlap(0);
// cout<<"go"<<endl;
// for(uint i(0); i<rangeUnitigs2.size(); ++i){
// cout<<(rangeUnitigs2[i].first)<<endl;
// }
// cout<<"true"<<endl;
for(uint i(0); i<rangeUnitigs.size(); ++i){
unitig=(rangeUnitigs[i].first);
// bool stop(false);
// if(rangeUnitigs[i].first!=rangeUnitigs2[i].first){
// cout<<read<<endl;
// cout<<"lol2"<<endl;
// cout<<rangeUnitigs[i].first<<endl<<rangeUnitigs2[i].first<<endl;
// cout<<rangeUnitigs[i].second<<" "<<rangeUnitigs2[i].second<<endl;
// stop=true;
// }
// if(stop){cin.get();}
// cout<<unitig<<endl;
// cout<<rangeUnitigs[i].first<<endl;
//case the rest of the read is too small
if(readLeft.size()<=unitig.size()){
uint miss(missmatchNumber(unitig.substr(0,readLeft.size()), readLeft, errors));
if(miss<miniMiss){
miniMiss=miss;
miniMissIndice=i;
ended=true;
// offset=unitig.size()-readLeft.size()-k+1;
}
}else{
//case the read is big enough we want to recover a true overlap
uint miss(missmatchNumber(unitig, read.substr(overlap.second,unitig.size()), errors));
if(miss<miniMiss){
if(miss<miniMiss){
kmer overlapNum(str2num(unitig.substr(unitig.size()-k+1,k-1)));
miniMiss=miss;
miniMissIndice=i;
nextUnitig=unitig;
nextOverlap=overlapNum;
}
}
}
}
// cout<<"end"<<endl;
if(miniMiss<=errors){
path.push_back(rangeUnitigs[miniMissIndice].second);
if (ended){return miniMiss;}
miniMiss+=mapOnRightEndGreedy(read , path, {nextOverlap,overlap.second+(nextUnitig.size()-k+1)}, errors-miniMiss);
}
return miniMiss;
}
int getRangedValue( std::string str )
{
int lovalue ,
hivalue ,
retcode = 0;
gettokennum( str, 0);
lovalue=str2num(gettokenstr);
gettokennum( str, 1);
hivalue=str2num(gettokenstr);
if (hivalue) {
retcode = RandomNum(lovalue, hivalue);
} else {
retcode = lovalue;
}
return retcode;
}