bool FunctionWidget1::loadParameterTable()
{
QColor subsColor(255, 210, 210);
QColor prodColor(210, 255, 210);
QColor modiColor(250, 250, 190);
QColor paraColor(210, 210, 255);
QColor volColor(210, 210, 255);
QColor timeColor(210, 210, 210);
QColor color;
size_t i, j;
CFunctionParameters & params = mpFunction->getVariables();
// list of usages for combobox
QStringList Usages;
for (i = 0; CFunctionParameter::RoleNameDisplay[i] != ""; i++)
{
if (dynamic_cast<CKinFunction *>(mpFunction) &&
CFunctionParameter::VARIABLE == (CFunctionParameter::Role) i) continue;
Usages += (FROM_UTF8(CFunctionParameter::RoleNameDisplay[i]));
}
//create list of data types (for combobox)
QStringList functionType;
for (i = 0; CFunctionParameter::DataTypeName[i] != ""; i++)
functionType += (FROM_UTF8(CFunctionParameter::DataTypeName[i]));
//find parameter units
assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
assert(pDataModel != NULL);
CModel * pModel = pDataModel->getModel();
assert(pModel != NULL);
CFindDimensions ddd(mpFunction, pModel->getQuantityUnitEnum() == CModel::dimensionlessQuantity,
pModel->getVolumeUnitEnum() == CModel::dimensionlessVolume,
pModel->getTimeUnitEnum() == CModel::dimensionlessTime,
pModel->getAreaUnitEnum() == CModel::dimensionlessArea,
pModel->getLengthUnitEnum() == CModel::dimensionlessLength
);
ddd.setUseHeuristics(true);
std::vector<std::string> units = ddd.findDimensionsBoth(pModel);
CFunctionParameter::Role usage;
QString qUsage;
//C_INT32 noOffunctParams = functParam.size();
Table1->setRowCount((int) params.size());
for (j = 0; j < params.size(); j++)
{
usage = params[j]->getUsage();
if (usage == CFunctionParameter::VARIABLE &&
dynamic_cast<CKinFunction *>(mpFunction))
{
usage = CFunctionParameter::PARAMETER;
params[j]->setUsage(usage);
}
qUsage = FROM_UTF8(CFunctionParameter::RoleNameDisplay[usage]);
switch (usage)
{
case CFunctionParameter::SUBSTRATE:
color = subsColor;
break;
case CFunctionParameter::PRODUCT:
color = prodColor;
break;
case CFunctionParameter::MODIFIER:
color = modiColor;
break;
case CFunctionParameter::PARAMETER:
color = paraColor;
break;
case CFunctionParameter::VOLUME:
color = volColor;
break;
case CFunctionParameter::TIME:
color = timeColor;
break;
case CFunctionParameter::VARIABLE:
color = QColor(250, 250, 250);
break;
default :
qUsage = "unknown";
color = QColor(255, 20, 20);
break;
}
// col. 0 (name)
QString Name = FROM_UTF8(params[j]->getObjectName());
if (!params[j]->isUsed())
Name += " (unused)";
if (Table1->item((int) j, COL_NAME) == NULL)
{
QTableWidgetItem *newItem = new QTableWidgetItem(Name);
newItem->setFlags(Qt::ItemIsDragEnabled | Qt::ItemIsUserCheckable | Qt::ItemIsEnabled);
Table1->setItem((int) j, COL_NAME, newItem);
}
else
Table1->item((int) j, COL_NAME)->setText(Name);
Table1->item((int) j, COL_NAME)->setBackground(QBrush(color));
// col. 1 (description)
QTableWidgetItem *newItem2 = new QTableWidgetItem();
newItem2->setFlags(Qt::ItemIsDragEnabled | Qt::ItemIsUserCheckable | Qt::ItemIsEnabled);
Table1->setItem((int) j, COL_USAGE, newItem2);
Table1->item((int) j, COL_USAGE)->setBackground(QBrush(color));
QComboBox *comboItem = new QComboBox(Table1);
comboItem->addItems(Usages);
comboItem->setCurrentIndex(comboItem->findText(qUsage));
comboItem->setDisabled(mReadOnly);
Table1->setCellWidget((int) j, COL_USAGE, comboItem);
// connection between comboItem and its parent, Table1
connect(comboItem, SIGNAL(activated(const QString &)), this, SLOT(slotTableValueChanged(const QString &)));
comboItem->setObjectName(QString::number(j)); // just need to save the row index
//col. 2 (units)
QString strUnit = FROM_UTF8(units[j]);
if (Table1->item((int) j, COL_UNIT) == NULL)
{
QTableWidgetItem *newItem = new QTableWidgetItem(strUnit);
newItem->setFlags(Qt::ItemIsDragEnabled | Qt::ItemIsUserCheckable | Qt::ItemIsEnabled);
Table1->setItem((int) j, COL_UNIT, newItem);
}
else
Table1->item((int) j, COL_UNIT)->setText(strUnit);
Table1->item((int) j, COL_UNIT)->setBackground(QBrush(color));
}
Table1->horizontalHeader()->setStretchLastSection(true);
Table1->resizeColumnsToContents();
Table1->resizeRowsToContents();
/*
Table1->setFixedSize(Table1->horizontalHeader()->length() + 10,
Table1->verticalHeader()->length() + 30);
*/
return true;
}
void ParameterTable::updateTable(const CReactionInterface & ri, const CReaction * pReaction)
{
blockSignals(true); // So cellChanged doesn't fire when items are set.
setRowCount(0);
if (pReaction == NULL) return;
CModel * pModel = dynamic_cast< CModel * >(pReaction->getObjectAncestor("Model"));
//first get the units strings
CFindDimensions units(ri.getFunction(), pModel->getQuantityUnit().isDimensionless(),
pModel->getVolumeUnit().isDimensionless(),
pModel->getTimeUnit().isDimensionless(),
pModel->getAreaUnit().isDimensionless(),
pModel->getLengthUnit().isDimensionless()
);
units.setUseHeuristics(true);
units.setMolecularitiesForMassAction(ri.getChemEqInterface().getMolecularity(CFunctionParameter::SUBSTRATE),
ri.getChemEqInterface().getMolecularity(CFunctionParameter::PRODUCT));
units.findDimensions(ri.isMulticompartment());
CFunctionParameter::Role usage;
// Load the comboDelegate lists
mGlobalParameters.clear();
mGlobalParameters = getListOfAllGlobalParameterNames(*pModel);
if (mGlobalParameters.indexOf("--local--") != -1) // in case someone names a parameter "--local--"
mGlobalParameters.replace(mGlobalParameters.indexOf("--local--"), "\"--local--\"");
mGlobalParameters.push_front("--local--");
std::vector<std::string>::const_iterator it;
mSubstrates.clear();
usage = CFunctionParameter::SUBSTRATE;
for (it = ri.getListOfMetabs(usage).begin(); it != ri.getListOfMetabs(usage).end(); ++it)
mSubstrates += FROM_UTF8(CMetabNameInterface::unQuote(*it));
mProducts.clear();
usage = CFunctionParameter::PRODUCT;
for (it = ri.getListOfMetabs(usage).begin(); it != ri.getListOfMetabs(usage).end(); ++it)
mProducts += FROM_UTF8(CMetabNameInterface::unQuote(*it));
mModifiers.clear(); // Get all metabs; modifiers are never locked
vectorOfStrings2QStringList(getListOfAllMetabNames(*pModel, ri), mModifiers);
mVolumes.clear();
mVolumes = getListOfAllCompartmentNames(*pModel);
size_t i, imax = ri.size();
size_t j, jmax;
size_t rowCounter = 0;
QTableWidgetItem *pItem = NULL;
QColor subsColor(255, 210, 210);
QColor prodColor(210, 255, 210);
QColor modiColor(250, 250, 190);
QColor paraColor(210, 210, 255);
QColor volColor(210, 210, 255);
QColor timeColor(210, 210, 210);
QString qUsage;
bool locked = false;
QColor color;
const std::vector<std::string> * metabNames;
mIndex2Line.resize(imax);
mLine2Index.clear();
setRowCount((int) imax);
for (i = 0; i < imax; ++i)
{
mIndex2Line[i] = rowCounter;
// set the stuff that is different for the specific usages
usage = ri.getUsage(i);
qUsage = FROM_UTF8(CFunctionParameter::RoleNameDisplay[usage]);
locked = ri.isLocked(i);
switch (usage)
{
case CFunctionParameter::SUBSTRATE:
color = subsColor;
break;
case CFunctionParameter::PRODUCT:
color = prodColor;
break;
case CFunctionParameter::MODIFIER:
color = modiColor;
break;
case CFunctionParameter::PARAMETER:
color = paraColor;
break;
case CFunctionParameter::VOLUME:
color = volColor;
break;
case CFunctionParameter::TIME:
color = timeColor;
break;
case CFunctionParameter::VARIABLE:
color = QColor(255, 20, 20);
break;
default :
qUsage = "unknown";
color = QColor(255, 20, 20);
break;
}
// add first column
pItem = new QTableWidgetItem(qUsage);
pItem->setBackground(color);
if (usage == CFunctionParameter::SUBSTRATE)
pItem->setIcon(CQIconResource::icon(CQIconResource::reactionSubstrate));
else if (usage == CFunctionParameter::PRODUCT)
pItem->setIcon(CQIconResource::icon(CQIconResource::reactionProduct));
else if (usage == CFunctionParameter::MODIFIER)
pItem->setIcon(CQIconResource::icon(CQIconResource::reactionModifier));
pItem->setFlags(pItem->flags() & (~Qt::ItemIsEditable));
setItem((int) rowCounter, 0, pItem);
// add second column
pItem = new QTableWidgetItem(FROM_UTF8(ri.getParameterName(i)));
pItem->setBackground(color);
if ((usage != CFunctionParameter::PARAMETER)
&& (usage != CFunctionParameter::VOLUME)
&& (usage != CFunctionParameter::TIME))
{
if (locked)
pItem->setIcon(CQIconResource::icon(CQIconResource::locked));
else
pItem->setIcon(CQIconResource::icon(CQIconResource::unlocked));
}
pItem->setFlags(pItem->flags() & (~Qt::ItemIsEditable));
setItem((int) rowCounter, 1, pItem);
// add units column
const CCopasiDataModel* pDataModel = pModel->getObjectDataModel();
if (pDataModel == NULL) return;
QString theseUnits = FROM_UTF8(" " + units.getDimensions()[i].getDisplayString(pModel));
pItem = new QTableWidgetItem(theseUnits);
pItem->setBackgroundColor(color);
pItem->setFlags(pItem->flags() & (~Qt::ItemIsEditable));
setItem((int) rowCounter, 4, pItem);
// Create and color Value column
pItem = new QTableWidgetItem("");
pItem->setBackground(QColor(color));
pItem->setFlags(pItem->flags() & (~Qt::ItemIsEditable));
setItem((int) rowCounter, 3, pItem);
// add fourth (Mapping) column (col index = 3)
pItem = new QTableWidgetItem("");
pItem->setBackground(color);
setItem((int) rowCounter, 2, pItem);
// if line is for a metabolite Parameter . . .
if ((usage == CFunctionParameter::SUBSTRATE)
|| (usage == CFunctionParameter::PRODUCT)
|| (usage == CFunctionParameter::MODIFIER))
{
metabNames = &(ri.getMappings(i));
if (locked)
{
pItem->setFlags(pItem->flags() & (~Qt::ItemIsEditable));
closePersistentEditor(pItem);
}
else
{
if (usage == CFunctionParameter::SUBSTRATE)
mpComboDelegate->setItems(rowCounter, &mSubstrates);
else if (usage == CFunctionParameter::PRODUCT)
mpComboDelegate->setItems(rowCounter, &mProducts);
else // must be MODIFIER
{
mpComboDelegate->setItems(rowCounter, &mModifiers);
}
openPersistentEditor(pItem);
}
if (!ri.isVector(i))
pItem->setText(FROM_UTF8(CMetabNameInterface::unQuote((*metabNames)[0])));
else
{
if (locked)
pItem->setText("");
else // this should not happen
pItem->setText("add species");
// add lines for vector parameters
jmax = metabNames->size();
setRowCount(rowCount() + (int)(jmax - 1));
item((int) rowCounter, 2)->setText(FROM_UTF8((*metabNames)[0]));
for (j = 1; j < jmax; ++j)
{
++rowCounter;
for (int k = 0; k < 5; k++)
{
pItem = new QTableWidgetItem("");
pItem->setFlags(pItem->flags() & (~Qt::ItemIsEditable));
pItem->setBackgroundColor(color);
setItem((int) rowCounter, k, pItem);
}
item((int) rowCounter, 2)->setText(FROM_UTF8((*metabNames)[j]));
item((int) rowCounter, 4)->setText(theseUnits);
}
}
}
// if line is for a kinetic parameter . . .
else if (usage == CFunctionParameter::PARAMETER)
{
mpComboDelegate->setItems(rowCounter, &mGlobalParameters);
if (ri.isLocalValue(i))
{
pItem->setText("--local--");
}
else //global parameter
{
QString paramText = FROM_UTF8(ri.getMapping(i));
if (paramText == "--local--")
paramText = "\"--local--\"";
pItem->setText(paramText);
}
openPersistentEditor(pItem);
// add item to Value column
pItem = item((int) rowCounter, 3);
if (ri.isLocalValue(i))
{
pItem->setText(QString::number(ri.getLocalValue(i)));
pItem->setFlags(pItem->flags() | (Qt::ItemIsEditable));
}
else
{
const std::vector<std::string> &mapping = pReaction->getParameterMapping(i);
if (mapping.size() > 0)
{
std::string Key = mapping[0];
const CModelValue * pParamObject =
dynamic_cast<const CModelValue *>(CCopasiRootContainer::getKeyFactory()->get(Key));
if (pParamObject != NULL &&
pParamObject->getStatus() == CModelEntity::FIXED)
{
pItem->setText(QString::number(pParamObject->getInitialValue()));
pItem->setTextColor(QColor(Qt::darkGray));
}
}
}
}
// if line is for a volume . . .
else if (usage == CFunctionParameter::VOLUME)
{
mpComboDelegate->setItems(rowCounter, &mVolumes);
pItem->setText(FROM_UTF8(ri.getMapping(i)));
openPersistentEditor(pItem);
}
// if line is for time . . .
else if (usage == CFunctionParameter::TIME)
{
pItem->setText("");
}
// if line is for an unknown role . . .
else
{
pItem->setText(QString::number(ri.getLocalValue(i)));
}
resizeRowToContents((int) rowCounter);
++rowCounter;
}
resizeColumnsToContents();
blockSignals(false);
}
void ParameterTable::updateTable(const CReactionInterface & ri, const CModel & model)
{
//first get the units strings
CFindDimensions units(ri.getFunction(), model.getQuantityUnitEnum() == CModel::dimensionlessQuantity,
model.getVolumeUnitEnum() == CModel::dimensionlessVolume,
model.getTimeUnitEnum() == CModel::dimensionlessTime,
model.getAreaUnitEnum() == CModel::dimensionlessArea,
model.getLengthUnitEnum() == CModel::dimensionlessLength
);
units.setUseHeuristics(true);
units.setMolecularitiesForMassAction(ri.getChemEqInterface().getMolecularity(CFunctionParameter::SUBSTRATE),
ri.getChemEqInterface().getMolecularity(CFunctionParameter::PRODUCT));
units.findDimensions(ri.isMulticompartment());
size_t i, imax = ri.size();
size_t j, jmax;
size_t rowCounter = 0;
QStringList qsl;
QColor subsColor(255, 210, 210);
QColor prodColor(210, 255, 210);
QColor modiColor(250, 250, 190);
QColor paraColor(210, 210, 255);
QColor volColor(210, 210, 255);
QColor timeColor(210, 210, 210);
CFunctionParameter::Role usage;
QString qUsage;
QColor color;
const std::vector<std::string> * metabNames;
mIndex2Line.resize(imax);
mLine2Index.clear();
this->setRowCount(0);
this->setRowCount((int)(imax * 2));
for (i = 0; i < imax; ++i)
{
rowCounter++;
mIndex2Line[i] = rowCounter;
// set the stuff that is different for the specific usages
usage = ri.getUsage(i);
qUsage = FROM_UTF8(CFunctionParameter::RoleNameDisplay[usage]);
switch (usage)
{
case CFunctionParameter::SUBSTRATE:
color = subsColor;
break;
case CFunctionParameter::PRODUCT:
color = prodColor;
break;
case CFunctionParameter::MODIFIER:
color = modiColor;
break;
case CFunctionParameter::PARAMETER:
color = paraColor;
break;
case CFunctionParameter::VOLUME:
color = volColor;
break;
case CFunctionParameter::TIME:
color = timeColor;
break;
case CFunctionParameter::VARIABLE:
color = QColor(255, 20, 20);
break;
default:
qUsage = "unknown";
color = QColor(255, 20, 20);
break;
}
// add first column
QTableWidgetItem * pItem = new ColorTableItem(color, qUsage);
if (usage == CFunctionParameter::SUBSTRATE) pItem->setIcon(CQIconResource::icon(CQIconResource::reactionSubstrate));
if (usage == CFunctionParameter::PRODUCT) pItem->setIcon(CQIconResource::icon(CQIconResource::reactionProduct));
if (usage == CFunctionParameter::MODIFIER) pItem->setIcon(CQIconResource::icon(CQIconResource::reactionModifier));
setItem((int) rowCounter, 0, pItem);
// add second column
pItem = new ColorTableItem(color, FROM_UTF8(ri.getParameterName(i)));
if ((usage != CFunctionParameter::PARAMETER)
&& (usage != CFunctionParameter::VOLUME)
&& (usage != CFunctionParameter::TIME))
{
if (ri.isLocked(i))
pItem->setIcon(CQIconResource::icon(CQIconResource::locked));
else
pItem->setIcon(CQIconResource::icon(CQIconResource::unlocked));
}
setItem((int) rowCounter, 1, pItem);
// add third column
pItem = new ColorTableItem(color, "");
if (usage == CFunctionParameter::PARAMETER)
{
pItem->setFlags(pItem->flags() | Qt::ItemIsUserCheckable);
pItem->setCheckState(ri.isLocalValue(i) ? Qt::Unchecked : Qt::Checked);
}
setItem((int) rowCounter, 2, pItem);
// add units column
assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
assert(pDataModel != NULL);
pItem = new ColorTableItem(color, FROM_UTF8(" " + units.getDimensions()[i].getDisplayString(pDataModel)));
setItem((int) rowCounter, 4, pItem);
// add a line for a metabolite Parameter
if ((usage == CFunctionParameter::SUBSTRATE)
|| (usage == CFunctionParameter::PRODUCT)
|| (usage == CFunctionParameter::MODIFIER))
{
// get the list of possible metabs (for the combo box)
if (usage == CFunctionParameter::MODIFIER) //get all metabs; modifiers are never locked
vectorOfStrings2QStringList(getListOfAllMetabNames(model, ri), qsl);
else //only get the modifiers from the ChemEq
{
if (!ri.isLocked(i))
vectorOfStrings2QStringList(ri.getListOfMetabs(usage), qsl);
}
metabNames = &(ri.getMappings(i));
if (!ri.isVector(i))
{
if (ri.isLocked(i))
{
pItem = new ColorTableItem(color, FROM_UTF8((*metabNames)[0]));
setItem((int) rowCounter, 3, pItem);
}
else
{
QComboBox * pComboBox = new QComboBox();
pComboBox->addItems(qsl);
pComboBox->setBackgroundColor(color);
pComboBox->setCurrentText(FROM_UTF8(unQuote((*metabNames)[0])));
setCellWidget((int) rowCounter, 3, pComboBox);
}
}
else
{
if (ri.isLocked(i))
{
pItem = new ColorTableItem(color, "");
setItem((int) rowCounter, 3, pItem);
}
else // this should not happen
{
QComboBox * pComboBox = new QComboBox();
pComboBox->addItems(qsl);
pComboBox->setBackgroundColor(color);
pComboBox->setCurrentText("add species");
setCellWidget((int) rowCounter, 3, pComboBox);
}
// add lines for vector parameters
jmax = metabNames->size();
setRowCount(rowCount() + (int) jmax);
for (j = 0; j < jmax; ++j)
{
++rowCounter;
pItem = new ColorTableItem(color, FROM_UTF8((*metabNames)[j]));
setItem((int) rowCounter, 3, pItem);
}
}
}
// add a line for a kinetic parameter
else if (usage == CFunctionParameter::PARAMETER)
{
if (ri.isLocalValue(i))
{
pItem = new ColorTableItem(color, QString::number(ri.getLocalValue(i)));
setItem((int) rowCounter, 3, pItem);
}
else //global parameter
{
QComboBox * pComboBox = new QComboBox();
pComboBox->addItems(getListOfAllGlobalParameterNames(model));
pComboBox->setBackgroundColor(color);
pComboBox->setCurrentText(FROM_UTF8(ri.getMapping(i)));
setCellWidget((int) rowCounter, 3, pComboBox);
}
}
// add a line for a kinetic parameter
else if (usage == CFunctionParameter::VOLUME)
{
QComboBox * pComboBox = new QComboBox();
pComboBox->addItems(getListOfAllCompartmentNames(model));
pComboBox->setBackgroundColor(color);
pComboBox->setCurrentText(FROM_UTF8(ri.getMapping(i)));
setCellWidget((int) rowCounter, 3, pComboBox);
}
// add a line for time
else if (usage == CFunctionParameter::TIME)
{
pItem = new ColorTableItem(color, "");
setItem((int) rowCounter, 3, pItem);
}
// add a line for an unknown role
else
{
pItem = new ColorTableItem(color, QString::number(ri.getLocalValue(i)));
setItem((int) rowCounter, 3, pItem);
}
resizeRowToContents((int) rowCounter);
//mLine2Index
++rowCounter;
}
this->resizeColumnsToContents();
}
