void ReportDialog::generateIndex()
{
logMessage("ReportDialog::generateIndex()");
QString fileNameTemplate = tempProblemDir() + "/report/template.html";
QString fileNameIndex = tempProblemDir() + "/report/report.html";
QString content;
// load template.html
content = readFileContent(fileNameTemplate);
QFile::remove(fileNameTemplate);
// save index.html
QFile fileIndex(fileNameIndex);
if (fileIndex.open(QIODevice::WriteOnly | QIODevice::Text))
{
QTextStream stream(&fileIndex);
stream.setCodec("UTF-8");
stream << replaceTemplates(content);
fileIndex.flush();
fileIndex.close();
}
}
QString cacheProblemDir()
{
#ifdef Q_WS_X11
// fast fix for ht condor
static QString cch = QStandardPaths::writableLocation(QStandardPaths::CacheLocation);
QDir dirc(cch);
if (!dirc.exists() && !cch.isEmpty())
dirc.mkpath(cch);
// ro system
if (!dirc.exists())
cch = tempProblemDir();
static QString str = QString("%1/%2").
arg(cch).
arg(QString::number(QCoreApplication::applicationPid()));
#endif
#ifdef Q_WS_WIN
static QString str = QString("%1/agros2d/%2").
arg(QDir::temp().absolutePath()).
arg(QString::number(QCoreApplication::applicationPid()));
#endif
QDir dir(str);
if (!dir.exists() && !str.isEmpty())
dir.mkpath(str);
return str;
}
void ReportDialog::generateFigures()
{
logMessage("ReportDialog::generateFigures()");
bool showRulers = chkShowRulers->isChecked();
bool showGrid = chkShowGrid->isChecked();
m_sceneView->saveImagesForReport(tempProblemDir() + "/report",
showRulers,
showGrid,
txtFigureWidth->value().number,
txtFigureHeight->value().number);
}
void Agros2D::clear()
{
delete m_singleton.data()->m_scene;
delete m_singleton.data()->m_problem;
delete m_singleton.data()->m_configComputer;
delete m_singleton.data()->m_solutionStore;
delete m_singleton.data()->m_log;
delete m_singleton.data()->m_memoryMonitor;
// remove temp and cache plugins
removeDirectory(cacheProblemDir());
removeDirectory(tempProblemDir());
}
void ImageSequenceDialog::animateSequence(int index)
{
if (m_images.count() == 0)
return;
QString fileName = tempProblemDir() + QString("/video/") + m_images.at(index);
if (QFile::exists(fileName))
{
m_currentImage.load(fileName);
updateImage();
lblStep->setText(QString("%1 / %2").arg(index + 1).arg(m_images.count()));
}
}
void readMeshDirtyFix()
{
// fix precalulating matrices for mapping of curved elements
// save locale
char *plocale = setlocale (LC_NUMERIC, "");
setlocale (LC_NUMERIC, "C");
std::ostringstream os;
os << "vertices = [" << std::endl <<
" [ 0, 0 ]," << std::endl <<
" [ 1, 0 ]," << std::endl <<
" [ 0, 1 ]" << std::endl <<
"]" << std::endl << std::endl <<
"elements = [" << std::endl <<
" [ 0, 1, 2, \"element_0\" ]" << std::endl << std::endl <<
"boundaries = [" << std::endl <<
" [ 0, 1, \"0\" ]," << std::endl <<
" [ 1, 2, \"0\" ]," << std::endl <<
" [ 2, 0, \"0\" ]" << std::endl <<
"]" << std::endl << std::endl <<
"curves = [" << std::endl <<
" [ 0, 1, 90 ]" << std::endl <<
"]" << std::endl;
Mesh mesh;
H2DReader meshloader;
std::ofstream outputFile((tempProblemDir().toStdString() + "/dummy.mesh").c_str(), fstream::out);
outputFile << os.str();
outputFile.close();
meshloader.load((tempProblemDir().toStdString() + "/dummy.mesh").c_str(), &mesh);
// set system locale
setlocale(LC_NUMERIC, plocale);
}
static PyObject *pythonTempname(PyObject* self, PyObject* pArgs)
{
QString tempDir = tempProblemDir() + "/temp/";
QDir(tempDir).mkdir(tempDir);
QString tempName = QUuid::createUuid().toString().remove("{").remove("}");
char *str = "";
if (PyArg_ParseTuple(pArgs, "|s", &str))
{
if (str != "")
tempName = tempName + "." + str;
}
return PyString_FromString((tempDir + tempName).toStdString().c_str());
}
void VideoDialog::setAdaptiveStep(int adaptiveStep)
{
Agros2D::problem()->setting()->setValue(ProblemSetting::View_ShowRulers, chkFigureShowRulers->isChecked());
Agros2D::problem()->setting()->setValue(ProblemSetting::View_ShowGrid, chkFigureShowGrid->isChecked());
Agros2D::problem()->setting()->setValue(ProblemSetting::View_ShowAxes, chkFigureShowAxes->isChecked());
m_postHermes->setActiveAdaptivityStep(adaptiveStep - 1);
m_postHermes->refresh();
sliderAdaptiveAnimate->setValue(adaptiveStep);
lblAdaptiveStep->setText(QString("%1 / %2").arg(adaptiveStep).arg(m_adaptiveSteps));
if (chkSaveImages->isChecked())
m_sceneViewInterface->saveImageToFile(tempProblemDir() + QString("/video/video_%1.png").arg(QString("0000000" + QString::number(adaptiveStep)).right(8)));
QApplication::processEvents();
}
static PyObject *pythonTempname(PyObject* self, PyObject* pArgs)
{
QString tempDir = tempProblemDir() + "/temp/";
QDir(tempDir).mkdir(tempDir);
QString tempName = QUuid::createUuid().toString().remove("{").remove("}");
QString fn = QFileInfo(tempDir + tempName).absoluteFilePath();
char *str = NULL;
if (PyArg_ParseTuple(pArgs, "|s", &str))
{
if (!QString(str).trimmed().isEmpty())
fn = fn + "." + str;
}
return PyString_FromString(compatibleFilename(fn).toLatin1().data());
}
QString ReportDialog::htmlFigure(const QString &fileName, const QString &caption)
{
logMessage("ReportDialog::htmlFigure()");
QString out;
if (QFile::exists(tempProblemDir() + "/report/" + fileName))
{
out += "\n";
out += QString("<img src=\"%1\"><p>" + tr("Figure: %2") + "</p>").
arg(fileName).
arg(caption);
out += "\n";
}
return out;
}
void VideoDialog::setTransientStep(int transientStep)
{
Agros2D::problem()->setting()->setValue(ProblemSetting::View_ShowRulers, chkFigureShowRulers->isChecked());
Agros2D::problem()->setting()->setValue(ProblemSetting::View_ShowGrid, chkFigureShowGrid->isChecked());
Agros2D::problem()->setting()->setValue(ProblemSetting::View_ShowAxes, chkFigureShowAxes->isChecked());
m_postHermes->setActiveTimeStep(transientStep);
m_postHermes->setActiveAdaptivityStep(Agros2D::solutionStore()->lastAdaptiveStep(m_postHermes->activeViewField(), SolutionMode_Normal, transientStep));
m_postHermes->refresh();
if (chkSaveImages->isChecked())
m_sceneViewInterface->saveImageToFile(tempProblemDir() + QString("/video/video_%1.png").arg(QString("0000000" + QString::number(transientStep)).right(8)));
sliderTransientAnimate->setValue(transientStep);
QString time = QString::number(m_timeLevels[transientStep], 'g');
lblTransientStep->setText(QString("%1 / %2").arg(transientStep).arg(m_timeSteps));
lblTransientTime->setText(tr("%1 / %2 s").arg(time).arg(m_timeLevels.last()));
QApplication::processEvents();
}
VideoDialog::VideoDialog(SceneViewPostInterface *sceneViewInterface, PostHermes *postHermes, QWidget *parent)
: QDialog(parent), m_sceneViewInterface(sceneViewInterface), m_postHermes(postHermes)
{
setModal(true);
setWindowIcon(icon("video"));
setWindowTitle(tr("Video"));
// create directory
QDir(tempProblemDir()).mkdir("video");
// store timestep
m_timeStepStore = m_postHermes->activeTimeStep();
// store adaptive step
m_adaptiveStepStore = m_postHermes->activeAdaptivityStep();
m_showRulersStore = Agros2D::problem()->setting()->value(ProblemSetting::View_ShowRulers).toBool();
m_showGridStore = Agros2D::problem()->setting()->value(ProblemSetting::View_ShowGrid).toBool();
m_showAxesStore = Agros2D::problem()->setting()->value(ProblemSetting::View_ShowAxes).toBool();
// timer create images
timer = new QTimer(this);
createControls();
}
void ReportDialog::doShowReport()
{
logMessage("ReportDialog::doShowReport()");
QDir(tempProblemDir()).mkdir("report");
QFile::remove(QString("%1/report/template.html").arg(tempProblemDir()));
QFile::remove(QString("%1/report/style.css").arg(tempProblemDir()));
bool fileTemplateOK = QFile::copy(QString(txtTemplate->text()),
QString("%1/report/template.html").arg(tempProblemDir()));
bool fileStyleOK = QFile::copy(QString(txtStyleSheet->text()),
QString("%1/report/style.css").arg(tempProblemDir()));
if (!fileTemplateOK)
QMessageBox::critical(QApplication::activeWindow(), tr("Error"), tr("Report template could not be copied."));
else if (!fileStyleOK)
QMessageBox::critical(QApplication::activeWindow(), tr("Error"), tr("Template style could not be copied."));
else
{
generateFigures();
generateIndex();
QDesktopServices::openUrl(QUrl::fromLocalFile(tempProblemDir() + "/report/report.html"));
}
}
void ChartDialog::doExportData()
{
logMessage("ChartDialog::doExportData()");
QSettings settings;
QString dir = settings.value("General/LastDataDir").toString();
QString selectedFilter;
QString fileName = QFileDialog::getSaveFileName(this, tr("Export data to file"), dir, tr("CSV files (*.csv);;Matlab/Octave script (*.m)"), &selectedFilter);
if (!fileName.isEmpty())
{
QString ext = (selectedFilter.contains("CSV")) ? ".csv" : ".m";
QFileInfo fileInfo(fileName);
// open file for write
if (fileInfo.suffix().isEmpty())
fileName = fileName + ext;
QFile file(fileName);
if (!file.open(QIODevice::WriteOnly | QIODevice::Text))
{
cerr << "Could not create " + fileName.toStdString() + " file." << endl;
return;
}
QTextStream out(&file);
// export
// csv
if (fileInfo.suffix().toLower() == "csv")
{
// header
for (int j = 0; j < trvTable->columnCount(); j++)
out << trvTable->horizontalHeaderItem(j)->text() << ";";
out << endl;
// items
for (int i = 0; i < trvTable->rowCount(); i++)
{
for (int j = 0; j < trvTable->columnCount(); j++)
out << trvTable->item(i, j)->text() << ";";
out << endl;
}
}
// m-file
if (fileInfo.suffix().toLower() == "m")
{
// items
for (int j = 0; j < trvTable->columnCount(); j++)
{
out << trvTable->horizontalHeaderItem(j)->text().replace(" ", "_") << " = [";
for (int i = 0; i < trvTable->rowCount(); i++)
out << trvTable->item(i, j)->text().replace(",", ".") << ((i <= trvTable->rowCount()-2) ? ", " : "");
out << "];" << endl;
}
// example
out << endl << endl;
out << "% example" << endl;
out << "% plot(sqrt(X.^2 + Y.^2), " << trvTable->horizontalHeaderItem(2)->text().replace(" ", "_") << ");" << endl;
out << "% grid on;" << endl;
out << "% xlabel('length (m)');" << endl;
out << "% ylabel('" << trvTable->horizontalHeaderItem(2)->text() << "');" << endl;
}
if (fileInfo.absoluteDir() != tempProblemDir())
settings.setValue("General/LastDataDir", fileInfo.absolutePath());
file.close();
}
}
QString tempProblemFileName()
{
return tempProblemDir() + "/temp";
}
ImageSequenceDialog::ImageSequenceDialog(QWidget *parent)
: QDialog(parent)
{
setModal(true);
setWindowIcon(icon("video"));
setWindowTitle(tr("Video"));
// read images
QStringList filters;
filters << "*.png";
QDir dir(tempProblemDir() + QString("/video"));
dir.setNameFilters(filters);
m_images = dir.entryList();
sliderAnimateSequence = new QSlider(Qt::Horizontal);
sliderAnimateSequence->setTickPosition(QSlider::TicksBelow);
sliderAnimateSequence->setMaximum(m_images.count() - 1);
connect(sliderAnimateSequence, SIGNAL(valueChanged(int)), this, SLOT(animateSequence(int)));
int speed = 300;
cmbSpeed = new QComboBox();
cmbSpeed->addItem(" 10 %", speed / 0.10);
cmbSpeed->addItem(" 25 %", speed / 0.25);
cmbSpeed->addItem(" 50 %", speed / 0.50);
cmbSpeed->addItem(" 75 %", speed / 0.75);
cmbSpeed->addItem("100 %", speed);
cmbSpeed->addItem("150 %", speed / 1.50);
cmbSpeed->addItem("200 %", speed / 2.00);
cmbSpeed->addItem("300 %", speed / 3.00);
cmbSpeed->addItem("400 %", speed / 4.00);
cmbSpeed->addItem("500 %", speed / 5.00);
QSettings settings;
cmbSpeed->setCurrentIndex(cmbSpeed->findData(settings.value("ImageSequenceDialog/Speed").toDouble()));
if (cmbSpeed->currentIndex() == -1)
cmbSpeed->setCurrentIndex(cmbSpeed->findData(speed));
btnAnimate = new QPushButton(tr("Run"));
btnClose = new QPushButton(tr("Close"));
btnClose->setDefault(true);
connect(btnClose, SIGNAL(clicked()), this, SLOT(doClose()));
lblStep = new QLabel();
QHBoxLayout *layoutControls = new QHBoxLayout();
layoutControls->addWidget(sliderAnimateSequence);
layoutControls->addWidget(lblStep);
layoutControls->addWidget(new QLabel(tr("Speed:")));
layoutControls->addWidget(cmbSpeed);
layoutControls->addWidget(btnAnimate);
layoutControls->addWidget(btnClose);
lblImage = new QLabel();
lblImage->setAlignment(Qt::AlignCenter);
QVBoxLayout *layoutViewport = new QVBoxLayout();
layoutViewport->addWidget(lblImage, Qt::AlignHCenter);
layoutViewport->addLayout(layoutControls);
setLayout(layoutViewport);
// timer create images
timer = new QTimer(this);
connect(btnAnimate, SIGNAL(clicked()), this, SLOT(animate()));
connect(timer, SIGNAL(timeout()), this, SLOT(animateNextStep()));
if (m_images.count() > 0)
animateSequence(0);
}
bool SolutionAgros::solve(Hermes::vector<Space *> space,
Hermes::vector<Solution *> solution,
Solver *solver, SparseMatrix *matrix, Vector *rhs)
{
bool isError = false;
if (linearityType == LinearityType_Linear)
{
DiscreteProblem dpLin(m_wf, space, true);
isError = !solveLinear(&dpLin, space, solution,
solver, matrix, rhs);
// dump matrix
FILE *f = fopen(QString(tempProblemDir() + "/matrix.m").toStdString().c_str(), "w");
matrix->dump(f, QString("mat").toStdString().c_str(), DF_MATRIX_MARKET);
fclose(f);
return !isError;
}
if (linearityType == LinearityType_Picard)
{
/*
DiscreteProblem dpNonlinPicard(m_wf, space, true);
// create Picard solution
Hermes::vector<Solution *> solutionPicard;
for (int i = 0; i < numberOfSolution; i++)
solutionPicard.push_back(new Solution());
// perform the Picard's iteration
for (int i = 0; i < linearityNonlinearSteps; i++)
{
isError = !solveLinear(&dpNonlinPicard, space, solutionPicard,
solver, matrix, rhs, false);
ProjNormType projNormTypeTMP = HERMES_H1_NORM;
// ProjNormType projNormTypeTMP = HERMES_L2_NORM;
// calc error
double *val_sol, *val_solpic, *val_diff;
double error = 0.0;
for (int i = 0; i < numberOfSolution; i++)
{
error += calc_abs_error(solution.at(i), solutionPicard.at(i), projNormTypeTMP) * 100.0
/ calc_norm(&sln_new, HERMES_H1_NORM) * 100;
val_sol = solution.at(i)->get_fn_values();
val_solpic = solutionPicard.at(i)->get_fn_values();
val_diff = new double[Space::get_num_dofs(space)];
for (int j = 0; j < Space::get_num_dofs(space); j++)
val_diff[j] = val_solpic[j]; // + 0.5 * (val_sol[j] - val_solpic[j]);
}
// emit signal
m_progressItemSolve->emitMessage(QObject::tr("Picards method rel. error (%2/%3): %1%").
arg(error, 0, 'f', 5).
arg(i + 1).
arg(linearityNonlinearSteps), false, 1);
// add error to the list
m_progressItemSolve->addNonlinearityError(error);
if (error < linearityNonlinearTolerance)
{
// FIXME - clean up
break;
}
// copy solution
for (int i = 0; i < numberOfSolution; i++)
{
// if (error > 100.0)
// solution.at(i)->multiply(0.5);
// else
solution.at(i)->copy(solutionPicard.at(i));
}
// Solution::vector_to_solutions(val_solpic, space, solution);
// Solution::vector_to_solutions(solutionPicard., space, solution);
}
for (int i = 0; i < solutionPicard.size(); i++)
delete solutionPicard.at(i);
solutionPicard.clear();
return !isError;
*/
}
if (linearityType == LinearityType_Newton)
{
/*
// project the initial condition on the FE space to obtain initial
// coefficient vector for the Newton's method.
info("Projecting to obtain initial vector for the Newton's method.");
double *coeff_vec = new double[Space::get_num_dofs(space)];
OGProjection::project_global(space, solution.at(0), coeff_vec,
Util::scene()->problemInfo()->matrixSolver);
DiscreteProblem dpNonlinNewton(wf, space, false);
// The Newton's loop.
double damping_coeff = 1.0;
// perform the Picard's iteration
for (int i = 0; i < linearityNonlinearSteps; i++)
{
// assemble the Jacobian matrix and residual vector.
dpNonlinNewton.assemble(coeff_vec, matrix, rhs, false);
// Multiply the residual vector with -1 since the matrix
// equation reads J(Y^n) \deltaY^{n+1} = -F(Y^n).
rhs->change_sign();
// Calculate the l2-norm of residual vector
double error = get_l2_norm(rhs);
// emit signal
m_progressItemSolve->emitMessage(QObject::tr("Newton’s method rel. error (%2/%3): %1")
.arg(error, 0, 'f', 5)
.arg(i)
.arg(linearityNonlinearSteps), false, 1);
// add error to the list
m_progressItemSolve->addNonlinearityError(error);
// if residual norm is within tolerance, or the maximum number of iteration has been reached, then quit.
if (error < linearityNonlinearTolerance)
break;
// Solve the linear system.
isError = solver->solve();
if (!isError)
error("Matrix solver failed.\n");
// add \deltaY^{n+1} to Y^n.
for (int j = 0; j < Space::get_num_dofs(space); j++)
coeff_vec[j] += damping_coeff * solver->get_solution()[j];
}
Solution::vector_to_solutions(coeff_vec, space, solution);
delete [] coeff_vec;
*/
}
}