void transMapGeneFreeList(struct transMapGene **pList)
/* Free a list of dynamically allocated transMapGene's */
{
struct transMapGene *el, *next;
for (el = *pList; el != NULL; el = next)
{
next = el->next;
transMapGeneFree(&el);
}
*pList = NULL;
}
static void getItemLabel(struct sqlConnection *conn, char *transMapInfoTbl,
struct sqlConnection *geneConn, char *transMapGeneTbl,
unsigned labelSet,
struct linkedFeatures *lf)
/* get label for a transMap item */
{
struct transMapInfo *info = NULL;
struct transMapGene *gene = NULL;
boolean srcDbExists = FALSE;
if (labelSet & (useOrgCommon|useOrgAbbrv|useOrgDb|useGene))
{
info = transMapInfoQuery(conn, transMapInfoTbl, lf->name);
srcDbExists = sqlDatabaseExists(info->srcDb);
}
if ((labelSet & useGene) && (geneConn != NULL))
{
gene = transMapGeneQuery(geneConn, transMapGeneTbl,
info->srcDb, transMapIdToAcc(info->srcId));
}
struct dyString *label = dyStringNew(64);
if (labelSet & useOrgAbbrv && srcDbExists)
addToLabel(label, orgShortForDb(info->srcDb));
if (labelSet & useOrgCommon && srcDbExists)
addToLabel(label, hOrganism(info->srcDb));
if (labelSet & useOrgDb)
addToLabel(label, info->srcDb);
if (labelSet & useGene)
{
if ((gene != NULL) && (strlen(gene->geneName) > 0))
addToLabel(label, gene->geneName);
else
labelSet |= useAcc; // no gene, so force acc
}
if (labelSet & useAcc)
addToLabel(label, transMapIdToAcc(lf->name));
transMapInfoFree(&info);
transMapGeneFree(&gene);
lf->extra = dyStringCannibalize(&label);
}
