// ----------------------------------------------------------------------------
void CGffFeatureRecord::SetLocation(
const CSeq_interval& interval)
// ----------------------------------------------------------------------------
{
m_pLoc.Reset(new CSeq_loc());
m_pLoc->SetInt().Assign(interval);
if ( interval.CanGetFrom() ) {
mSeqStart = interval.GetFrom();
}
if ( interval.CanGetTo() ) {
mSeqStop = interval.GetTo();
}
unsigned int seqStart = Location().GetStart(eExtreme_Positional);
unsigned int seqStop = Location().GetStop(eExtreme_Positional);
string min = NStr::IntToString(seqStart + 1);
string max = NStr::IntToString(seqStop + 1);
if (Location().IsPartialStart(eExtreme_Biological)) {
if (Location().GetStrand() == eNa_strand_minus) {
SetAttribute("end_range", max + string(",."));
}
else {
SetAttribute("start_range", string(".,") + min);
}
}
if (Location().IsPartialStop(eExtreme_Biological)) {
if (Location().GetStrand() == eNa_strand_minus) {
SetAttribute("start_range", string(".,") + min);
}
else {
SetAttribute("end_range", max + string(",."));
}
}
if ( interval.IsSetStrand() ) {
SetStrand(interval.GetStrand());
}
}
