bool CQTSSAWidget::loadTask()
{
CTSSATask * pTask =
dynamic_cast< CTSSATask * >(mpTask);
if (!pTask) return false;
loadCommon();
loadMethod();
CTSSAProblem* tssaproblem =
dynamic_cast<CTSSAProblem *>(pTask->getProblem());
assert(tssaproblem);
pdelete(mpTSSAProblem);
mpTSSAProblem = new CTSSAProblem(*tssaproblem);
//numbers
mpEditIntervalSize->setText(QString::number(tssaproblem->getStepSize()));
mpEditIntervals->setText(QString::number(tssaproblem->getStepNumber()));
mpEditDuration->setText(QString::number(tssaproblem->getDuration()));
//store time series checkbox
mpCheckSave->setChecked(tssaproblem->timeSeriesRequested());
checkTimeSeries();
mpValidatorDuration->saved();
mpValidatorIntervalSize->saved();
return true;
}
bool CQTSSAWidget::loadTask()
{
CTSSATask * pTask =
dynamic_cast< CTSSATask * >(mpTask);
if (!pTask) return false;
loadCommon();
loadMethod();
CTSSAProblem * tssaproblem = dynamic_cast<CTSSAProblem *>(pTask->getProblem());
assert(tssaproblem);
pdelete(mpTSSAProblem);
mpTSSAProblem = new CTSSAProblem(*tssaproblem, NO_PARENT);
//numbers
mpEditIntervalSize->setText(QString::number(tssaproblem->getStepSize()));
mpEditIntervals->setText(QString::number(tssaproblem->getStepNumber()));
mpEditDuration->setText(QString::number(tssaproblem->getDuration()));
mpValidatorDuration->saved();
mpValidatorIntervalSize->saved();
return true;
}
bool CQTSSAWidget::saveTask()
{
CTSSATask * pTask =
dynamic_cast< CTSSATask * >(mpTask);
if (!pTask) return false;
saveCommon();
saveMethod();
CTSSAProblem* tssaproblem =
dynamic_cast<CTSSAProblem *>(pTask->getProblem());
assert(tssaproblem);
//numbers
if (tssaproblem->getStepSize() != mpEditIntervalSize->text().toDouble())
{
tssaproblem->setStepSize(mpEditIntervalSize->text().toDouble());
mChanged = true;
}
else if (tssaproblem->getStepNumber() != mpEditIntervals->text().toULong())
{
tssaproblem->setStepNumber(mpEditIntervals->text().toLong());
mChanged = true;
}
if (tssaproblem->getDuration() != mpEditDuration->text().toDouble())
{
tssaproblem->setDuration(mpEditDuration->text().toDouble());
mChanged = true;
}
if (tssaproblem->timeSeriesRequested() != mpCheckSave->isChecked())
{
tssaproblem->setTimeSeriesRequested(mpCheckSave->isChecked());
mChanged = true;
}
mpValidatorDuration->saved();
mpValidatorIntervalSize->saved();
return true;
}
void CILDMMethod::printResult(std::ostream * ostream) const // temporary tabs are not included in Report !!!
{
std::ostream & os = *ostream;
double timeScale;
C_INT i, j, istep = 0;
C_INT32 stepNumber;
this->print(&os);
assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
CTSSATask* pTask =
dynamic_cast<CTSSATask *>((*(*CCopasiRootContainer::getDatamodelList())[0]->getTaskList())["Time Scale Separation Analysis"]);
CTSSAProblem* pProblem = dynamic_cast<CTSSAProblem*>(pTask->getProblem());
stepNumber = pProblem->getStepNumber();
for (istep = 0; istep < stepNumber; istep++)
{
os << std::endl;
os << "**************** Time step " << istep + 1 << " ************************** " << std::endl;
os << std::endl;
os << "Contribution of species to modes" << std::endl;
os << "Rows : contribution to mode (TS - corresponding timescale)" << std::endl;
os << "Columns: species ";
for (j = 0; j < mData.dim; j++)
{
os << mpModel->getMetabolitesX()[j]->getObjectName() << " ";
}
os << std::endl;
for (i = 0; i < mData.dim; i++)
{
timeScale = mVec_TimeScale[istep][i];
if (i < mVec_SlowModes[istep])
os << "Slow (";
else
os << "Fast (";
os << timeScale << "): ";
for (j = 0; j < mData.dim; j++)
os << mVec_mVslow[istep][i][j] << " ";
os << std::endl;
}
os << std::endl;
os << "Modes distribution for species" << std::endl;
os << "Rows : Mode distribution for each species" << std::endl;
os << "Columns: Modes (TS - corresponding timescale) ";
os << std::endl;
for (i = 0; i < mData.dim; i++)
{
timeScale = mVec_TimeScale[istep][i];
if (i < mVec_SlowModes[istep])
os << "Slow (";
else
os << "Fast (";
os << timeScale << ") ";
}
os << std::endl;
for (j = 0; j < mData.dim; j++)
{
os << mpModel->getMetabolitesX()[j]->getObjectName() << " ";
for (i = 0; i < mData.dim; i++)
os << mVec_mVslowMetab[istep][j][i] << " ";
os << std::endl;
}
os << std::endl;
os << "Slow space" << std::endl;
os << "Rows : Species" << std::endl;
os << "Column: Contribution to slow space ";
os << std::endl;
os << mVec_SlowModes[istep];
os << " slow; ";
os << mData.dim - mVec_SlowModes[istep];
os << " fast";
os << std::endl;
for (j = 0; j < mData.dim; j++)
{
os << mpModel->getMetabolitesX()[j]->getObjectName() << " ";
os << mVec_mVslowSpace[istep][j] << " ";
os << std::endl;
}
os << std::endl;
os << "Fast space" << std::endl;
os << "Rows : Species" << std::endl;
os << "Column: Contribution to fast space ";
os << std::endl;
os << mVec_SlowModes[istep];
os << " slow; ";
os << mData.dim - mVec_SlowModes[istep];
os << " fast";
os << std::endl;
for (j = 0; j < mData.dim; j++)
{
os << mpModel->getMetabolitesX()[j]->getObjectName() << " ";
os << mVec_mVfastSpace[istep][j] << " ";
os << std::endl;
}
os << std::endl;
os << "Reactions slow space" << std::endl;
os << "Rows : Reactions" << std::endl;
os << "Column: Contribution to slow space ";
os << std::endl;
for (j = 0; j < (C_INT32) mpModel->getReactions().size(); j++)
{
os << mpModel->getReactions()[j]->getObjectName() << " ";
os << mVec_mReacSlowSpace[istep][j] << " ";
os << std::endl;
}
os << std::endl;
}
return;
}