Beispiel #1
0
	void processResData_ByRotID( const std::string& resName, ContainerType& data, RotamerLibrary& _RotLib )
	{
		// Sort the data to increase efficiency below
		std::stable_sort( data.begin(), data.end(), sortPsi);
		std::stable_sort( data.begin(), data.end(), sortPhi);		
		std::stable_sort( data.begin(), data.end(), sortRotID);

		ContainerType subdata;
		
		while( true )
		{
			if( data.size() > 0 && (subdata.size() == 0 || subdata[0].rotID.compare( data.back().rotID,0,4,0 )) )
			{
				subdata.push_back( data.back() );
				data.erase(data.end()-1); // rob the end, not the start (ContainerType<> perfomance reasons!)
			}
			else
			{
				ASSERT( data.size() == (36*36), ParseException, "Assumption error!");
				ASSERT( data[0].phi == -180.0 && data[0].psi == -180.0, ParseException, "Wrong phi/psi");
				for( size_t j = 1; j < data.size(); j++ )
				{	
					ASSERT( data[j].phi == (-180.0+(j/36)*10) && data[j].psi == (-180.0+(j%36)*10), ParseException, "Wrong phi/psi");			
				}
				processData( resName, subdata, _RotLib, 40.0 ); // 40 degree tollerance delta from data[0]
				subdata.clear();
				if( data.size() == 0 )
				{
					return;
				}
			}
		}		
	}
Beispiel #2
0
	// This function is given an entire block of the same residue. The rotamerIDs will of course be different.
	void processResData( const std::string& resName, ContainerType& data, RotamerLibrary& _RotLib, bool switchImportMode )
	{
		// Either there is something fundamental I don't understand, or ...
		// The dunbrack library has this really annoying thing whereby the 180 and -180 phi/psi torsions,
		// which are by definition the same thing, are both defined! 
		// We only want one, as both represent the same 10 degree bin!
		data.erase(std::remove_if(data.begin(),data.end(),removeParseData),data.end());

		if( switchImportMode )
		{
			processResData_ByRotID(resName,data,_RotLib);
		}
		else
		{
			data.erase(std::remove_if(data.begin(),data.end(),removeLowPropensity),data.end());
			processResData_ByChis(resName,data,_RotLib);
		}
	}