/**
* Calculates the lat/lon of the ControlNet.
*
* @param incubes The filename of the list of cubes in the ControlNet
* @param cnet The filename of the ControlNet
*/
void setControlPointLatLon(SerialNumberList &snl, ControlNet &cnet) {
CubeManager manager;
manager.SetNumOpenCubes(50); //Should keep memory usage to around 1GB
Progress progress;
progress.SetText("Calculating Lat/Lon");
progress.SetMaximumSteps(cnet.GetNumPoints());
progress.CheckStatus();
for (int cp = 0; cp < cnet.GetNumPoints(); cp++) {
ControlPoint *point = cnet.GetPoint(cp);
ControlMeasure *cm = point->GetRefMeasure();
Cube *cube = manager.OpenCube(snl.FileName(cm->GetCubeSerialNumber()));
try {
cube->camera()->SetImage(cm->GetSample(), cm->GetLine());
g_surfacePoints[point->GetId()] = cube->camera()->GetSurfacePoint();
}
catch (IException &e) {
QString msg = "Unable to create camera for cube file [";
msg += snl.FileName(cm->GetCubeSerialNumber()) + "]";
throw IException(e, IException::Unknown, msg, _FILEINFO_);
}
cube = NULL; //Do not delete, manager still has ownership
progress.CheckStatus();
}
manager.CleanCubes();
}
void IsisMain() {
UserInterface &ui = Application::GetUserInterface();
FileList addList(ui.GetFileName("ADDLIST"));
bool log = false;
FileName logFile;
if (ui.WasEntered("LOG")) {
log = true;
logFile = ui.GetFileName("LOG");
}
Pvl results;
results.setName("cnetadd_Results");
PvlKeyword added("FilesAdded");
PvlKeyword omitted("FilesOmitted");
PvlKeyword pointsModified("PointsModified");
bool checkMeasureValidity = ui.WasEntered("DEFFILE");
ControlNetValidMeasure validator;
if (checkMeasureValidity) {
Pvl deffile(ui.GetFileName("DEFFILE"));
validator = ControlNetValidMeasure(deffile);
}
SerialNumberList *fromSerials = ui.WasEntered("FROMLIST") ?
new SerialNumberList(ui.GetFileName("FROMLIST")) : new SerialNumberList();
ControlNet inNet = ControlNet(ui.GetFileName("CNET"));
inNet.SetUserName(Application::UserName());
inNet.SetModifiedDate(iTime::CurrentLocalTime()); //This should be done in ControlNet's Write fn
QString retrievalOpt = ui.GetString("RETRIEVAL");
PvlKeyword duplicates("DupSerialNumbers");
if (retrievalOpt == "REFERENCE") {
FileList list1(ui.GetFileName("FROMLIST"));
SerialNumberList addSerials(ui.GetFileName("ADDLIST"));
//Check for duplicate files in the lists by serial number
for (int i = 0; i < addSerials.Size(); i++) {
// Check for duplicate SNs accross the lists
if (fromSerials->HasSerialNumber(addSerials.SerialNumber(i))) {
duplicates.addValue(addSerials.FileName(i));
}
// Check for duplicate SNs within the addlist
for (int j = i + 1; j < addSerials.Size(); j++) {
if (addSerials.SerialNumber(i) == addSerials.SerialNumber(j)) {
QString msg = "Add list files [" + addSerials.FileName(i) + "] and [";
msg += addSerials.FileName(j) + "] share the same serial number.";
throw IException(IException::User, msg, _FILEINFO_);
}
}
}
// Get the lat/long coords from the existing reference measure
setControlPointLatLon(*fromSerials, inNet);
}
else {
for (int cp = 0; cp < inNet.GetNumPoints(); cp++) {
// Get the surface point from the current control point
ControlPoint *point = inNet.GetPoint(cp);
SurfacePoint surfacePoint = point->GetBestSurfacePoint();
if (!surfacePoint.Valid()) {
QString msg = "Unable to retreive lat/lon from Control Point [";
msg += point->GetId() + "]. RETREIVAL=POINT cannot be used unless ";
msg += "all Control Points have Latitude/Longitude keywords.";
throw IException(IException::User, msg, _FILEINFO_);
}
g_surfacePoints[point->GetId()] = surfacePoint;
}
}
FileName outNetFile(ui.GetFileName("ONET"));
Progress progress;
progress.SetText("Adding Images");
progress.SetMaximumSteps(addList.size());
progress.CheckStatus();
STRtree coordTree;
QList<ControlPoint *> pointList;
bool usePolygon = ui.GetBoolean("POLYGON");
if (usePolygon) {
for (int cp = 0; cp < inNet.GetNumPoints(); cp++) {
ControlPoint *point = inNet.GetPoint(cp);
SurfacePoint surfacePoint = g_surfacePoints[point->GetId()];
Longitude lon = surfacePoint.GetLongitude();
Latitude lat = surfacePoint.GetLatitude();
Coordinate *coord = new Coordinate(lon.degrees(), lat.degrees());
Envelope *envelope = new Envelope(*coord);
coordTree.insert(envelope, point);
}
}
else {
for (int cp = 0; cp < inNet.GetNumPoints(); cp++) {
pointList.append(inNet.GetPoint(cp));
}
}
// Loop through all the images
for (int img = 0; img < addList.size(); img++) {
Cube cube;
cube.open(addList[img].toString());
Pvl *cubepvl = cube.label();
QString sn = SerialNumber::Compose(*cubepvl);
Camera *cam = cube.camera();
// Loop through all the control points
QList<ControlPoint *> validPoints = usePolygon ?
getValidPoints(cube, coordTree) : pointList;
bool imageAdded = false;
for (int cp = 0; cp < validPoints.size(); cp++) {
ControlPoint *point = validPoints[cp];
// If the point is locked and Apriori source is "AverageOfMeasures"
// then do not add the measures.
if (point->IsEditLocked() &&
point->GetAprioriSurfacePointSource() ==
ControlPoint::SurfacePointSource::AverageOfMeasures) {
continue;
}
if (point->HasSerialNumber(sn)) continue;
// Only use the surface point's latitude and longitude, rely on the DEM
// for computing the radius. We do this because otherwise we will receive
// inconsistent results from successive runs of this program if the
// different DEMs are used, or the point X, Y, Z was generated from the
// ellipsoid.
SurfacePoint surfacePoint = g_surfacePoints[point->GetId()];
if (cam->SetGround(
surfacePoint.GetLatitude(), surfacePoint.GetLongitude())) {
// Make sure the samp & line are inside the image
if (cam->InCube()) {
ControlMeasure *newCm = new ControlMeasure();
newCm->SetCoordinate(cam->Sample(), cam->Line(), ControlMeasure::Candidate);
newCm->SetAprioriSample(cam->Sample());
newCm->SetAprioriLine(cam->Line());
newCm->SetCubeSerialNumber(sn);
newCm->SetDateTime();
newCm->SetChooserName("Application cnetadd");
// Check the measure for DEFFILE validity
if (checkMeasureValidity) {
if (!validator.ValidEmissionAngle(cam->EmissionAngle())) {
//TODO: log that it was Emission Angle that failed the check
newCm->SetIgnored(true);
}
else if (!validator.ValidIncidenceAngle(cam->IncidenceAngle())) {
//TODO: log that it was Incidence Angle that failed the check
newCm->SetIgnored(true);
}
else if (!validator.ValidResolution(cam->resolution())) {
//TODO: log that it was Resolution that failed the check
newCm->SetIgnored(true);
}
else if (!validator.PixelsFromEdge((int)cam->Sample(), (int)cam->Line(), &cube)) {
//TODO: log that it was Pixels from Edge that failed the check
newCm->SetIgnored(true);
}
else {
Portal portal(1, 1, cube.pixelType());
portal.SetPosition(cam->Sample(), cam->Line(), 1);
cube.read(portal);
if (!validator.ValidDnValue(portal[0])) {
//TODO: log that it was DN that failed the check
newCm->SetIgnored(true);
}
}
}
point->Add(newCm); // Point takes ownership
// Record the modified Point and Measure
g_modifications[point->GetId()].insert(newCm->GetCubeSerialNumber());
newCm = NULL; // Do not delete because the point has ownership
if (retrievalOpt == "POINT" && point->GetNumMeasures() == 1)
point->SetIgnored(false);
imageAdded = true;
}
}
}
cubepvl = NULL;
cam = NULL;
if (log) {
PvlKeyword &logKeyword = (imageAdded) ? added : omitted;
logKeyword.addValue(addList[img].baseName());
}
progress.CheckStatus();
}
if (log) {
// Add the list of modified points to the output log file
QList<QString> modifiedPointsList = g_modifications.keys();
for (int i = 0; i < modifiedPointsList.size(); i++)
pointsModified += modifiedPointsList[i];
results.addKeyword(added);
results.addKeyword(omitted);
results.addKeyword(pointsModified);
if (duplicates.size() > 0) {
results.addKeyword(duplicates);
}
results.write(logFile.expanded());
}
// List the modified points
if (ui.WasEntered("MODIFIEDPOINTS")) {
FileName pointList(ui.GetFileName("MODIFIEDPOINTS"));
// Set up the output file for writing
std::ofstream out_stream;
out_stream.open(pointList.expanded().toAscii().data(), std::ios::out);
out_stream.seekp(0, std::ios::beg); //Start writing from beginning of file
QList<QString> modifiedPointsList = g_modifications.keys();
for (int i = 0; i < modifiedPointsList.size(); i++)
out_stream << modifiedPointsList[i].toStdString() << std::endl;
out_stream.close();
}
// Modify the inNet to only have modified points/measures
if (ui.GetString("EXTRACT") == "MODIFIED") {
for (int cp = inNet.GetNumPoints() - 1; cp >= 0; cp--) {
ControlPoint *point = inNet.GetPoint(cp);
// If the point was not modified, delete
// Even get rid of edit locked points in this case
if (!g_modifications.contains(point->GetId())) {
point->SetEditLock(false);
inNet.DeletePoint(cp);
}
// Else, remove the unwanted measures from the modified point
else {
for (int cm = point->GetNumMeasures() - 1; cm >= 0; cm--) {
ControlMeasure *measure = point->GetMeasure(cm);
// Even get rid of edit locked measures in this case
if (point->GetRefMeasure() != measure &&
!g_modifications[point->GetId()].contains(
measure->GetCubeSerialNumber())) {
measure->SetEditLock(false);
point->Delete(cm);
}
}
}
}
}
// Generate the TOLIST if wanted
if (ui.WasEntered("TOLIST")) {
SerialNumberList toList;
SerialNumberList addSerials(ui.GetFileName("ADDLIST"));
const QList<QString> snList = inNet.GetCubeSerials();
for (int i = 0; i < snList.size(); i++) {
QString sn = snList[i];
if (addSerials.HasSerialNumber(sn))
toList.Add(addSerials.FileName(sn));
else if (fromSerials->HasSerialNumber(sn))
toList.Add(fromSerials->FileName(sn));
}
IString name(ui.GetFileName("TOLIST"));
std::fstream out_stream;
out_stream.open(name.c_str(), std::ios::out);
out_stream.seekp(0, std::ios::beg); //Start writing from beginning of file
for (int f = 0; f < (int) toList.Size(); f++)
out_stream << toList.FileName(f) << std::endl;
out_stream.close();
}
inNet.Write(outNetFile.expanded());
delete fromSerials;
}
/**
* FindCnetRef traverses all the control points and measures in the network and checks for
* valid Measure which passes the Emission Incidence Angle, DN value tests and chooses the
* measure with the best Resolution criteria as the reference. Creates a new control network
* with these adjustments.
*
* @author Sharmila Prasad (5/25/2010)
* @history 2010-10-04 Sharmila Prasad - Modified for Binary CNet (Edit Lock)
*
* @param pNewNet - Modified output Control Net
*
*/
void CnetRefByResolution::FindCnetRef(ControlNet &pNewNet) {
// Process each existing control point in the network
int iPointsModified = 0;
int iMeasuresModified = 0;
int iRefChanged = 0;
//Status Report
mStatus.SetText("Choosing Reference by Resolution...");
mStatus.SetMaximumSteps(pNewNet.GetNumPoints());
mStatus.CheckStatus();
//mPvlLog += GetStdOptions();
for (int point = 0; point < pNewNet.GetNumPoints(); ++point) {
ControlPoint *newPnt = pNewNet.GetPoint(point);
bool bError = false;
// Create a copy of original control point
const ControlPoint origPnt(*newPnt);
mdResVector.clear();
// Logging
PvlObject pvlPointObj("PointDetails");
pvlPointObj += Isis::PvlKeyword("PointId", newPnt->GetId());
// Edit Lock Option
bool bPntEditLock = newPnt->IsEditLocked();
if (!bPntEditLock) {
newPnt->SetDateTime(Application::DateTime());
}
else {
pvlPointObj += Isis::PvlKeyword("Reference", "No Change, PointEditLock");
}
int iNumMeasuresLocked = newPnt->GetNumLockedMeasures();
bool bRefLocked = newPnt->GetRefMeasure()->IsEditLocked();
int numMeasures = newPnt->GetNumMeasures();
int iRefIndex = -1;
if (newPnt->IsReferenceExplicit())
iRefIndex = newPnt->IndexOfRefMeasure();
QString istrTemp;
std::vector <PvlGroup> pvlGrpVector;
int iBestIndex = 0;
// Only perform the interest operation on points of type "Free" and
// Points having atleast 1 measure and Point is not Ignored
// Check for EditLock in the Measures and also verfify that
// only a Reference Measure can be Locked else error
if (!newPnt->IsIgnored() && newPnt->GetType() == ControlPoint::Free && numMeasures > 0 &&
(iNumMeasuresLocked == 0 || (iNumMeasuresLocked > 0 && bRefLocked))) {
int iNumIgnore = 0;
QString istrTemp;
for (int measure = 0; measure < newPnt->GetNumMeasures(); ++measure) {
ControlMeasure *newMsr = newPnt->GetMeasure(measure);
bool bMeasureLocked = newMsr->IsEditLocked();
double dSample = newMsr->GetSample();
double dLine = newMsr->GetLine();
QString sn = newMsr->GetCubeSerialNumber();
if (!bPntEditLock && !bMeasureLocked) {
newMsr->SetDateTime(Application::DateTime());
newMsr->SetChooserName("Application cnetref(Resolution)");
}
// Log
PvlGroup pvlMeasureGrp("MeasureDetails");
pvlMeasureGrp += Isis::PvlKeyword("SerialNum", sn);
pvlMeasureGrp += Isis::PvlKeyword("OriginalLocation", LocationString(dSample, dLine));
if (bMeasureLocked)
pvlMeasureGrp += Isis::PvlKeyword("EditLock", "True");
if (!newMsr->IsIgnored()) {
Cube *measureCube = mCubeMgr.OpenCube(mSerialNumbers.FileName(sn));
MeasureValidationResults results =
ValidStandardOptions(newMsr, measureCube, &pvlMeasureGrp);
if (!results.isValid()) {
if (bPntEditLock) {
pvlMeasureGrp += Isis::PvlKeyword("UnIgnored", "Failed Validation Test but not Ignored as Point EditLock is True");
}
else if (bMeasureLocked) {
pvlMeasureGrp += Isis::PvlKeyword("UnIgnored", "Failed Validation Test but not Ignored as Measure EditLock is True");
}
else {
pvlMeasureGrp += Isis::PvlKeyword("Ignored", "Failed Validation Test");
newMsr->SetIgnored(true);
iNumIgnore++;
}
} // valid measure
else {
if (!bPntEditLock && !bRefLocked) {
newMsr->SetType(ControlMeasure::Candidate);
newMsr->SetIgnored(false);
mdResVector.push_back(mdResolution);
}
}
} // Ignore == false
else {
pvlMeasureGrp += Isis::PvlKeyword("Ignored", "Originally Ignored");
iNumIgnore++;
}
if (newMsr != origPnt.GetMeasure(measure)) {
iMeasuresModified++;
}
//newPnt.UpdateMeasure(newMsr); // Redesign fixed this
pvlGrpVector.push_back(pvlMeasureGrp);
}// end Measure
if ((newPnt->GetNumMeasures() - iNumIgnore) < 2) {
if (bPntEditLock) {
pvlPointObj += Isis::PvlKeyword("UnIgnored", "Good Measures less than 2 but not Ignored as Point EditLock is True");
}
else {
newPnt->SetIgnored(true);
pvlPointObj += Isis::PvlKeyword("Ignored", "Good Measures less than 2");
}
}
// Set the Reference if the Point is unlocked and Reference measure is unlocked
if (!newPnt->IsIgnored() && !bPntEditLock && !bRefLocked) {
iBestIndex = GetReferenceByResolution(newPnt);
if (iBestIndex >= 0 && !newPnt->GetMeasure(iBestIndex)->IsIgnored()) {
newPnt->SetRefMeasure(iBestIndex);
//newPnt.UpdateMeasure(cm); // Redesign fixed this
pvlGrpVector[iBestIndex] += Isis::PvlKeyword("Reference", "true");
}
else {
if (iBestIndex < 0 && meType == Range) {
pvlPointObj += Isis::PvlKeyword("NOTE", "No Valid Measures within the Resolution Range. Reference defaulted to the first Measure");
}
iBestIndex = 0;
newPnt->SetRefMeasure(iBestIndex);
//newPnt.UpdateMeasure(cm); // Redesign fixed this
// Log info, if Point not locked, apriori source == Reference and a new reference
if (iRefIndex != iBestIndex &&
newPnt->GetAprioriSurfacePointSource() == ControlPoint::SurfacePointSource::Reference) {
pvlGrpVector[iBestIndex] += Isis::PvlKeyword("AprioriSource", "Reference is the source and has changed");
}
}
}
for (int i = 0; i < newPnt->GetNumMeasures(); i++) {
pvlPointObj += pvlGrpVector[i];
}
} // end Free
else {
int iComment = 0;
if (numMeasures == 0) {
QString sComment = "Comment";
sComment += QString(++iComment);
pvlPointObj += Isis::PvlKeyword(sComment, "No Measures in the Point");
}
if (newPnt->IsIgnored()) {
QString sComment = "Comment";
sComment += QString(++iComment);
pvlPointObj += Isis::PvlKeyword(sComment, "Point was originally Ignored");
}
if (newPnt->GetType() == ControlPoint::Fixed) {
QString sComment = "Comment";
sComment += QString(++iComment);
pvlPointObj += Isis::PvlKeyword(sComment, "Fixed Point");
}
else if (newPnt->GetType() == ControlPoint::Constrained) {
QString sComment = "Comment";
sComment += QString(++iComment);
pvlPointObj += Isis::PvlKeyword(sComment, "Constrained Point");
}
if (iNumMeasuresLocked > 0 && !bRefLocked) {
pvlPointObj += Isis::PvlKeyword("Error", "Point has a Measure with EditLock set to true "
"but the Reference is not Locked");
bError = true;
}
else {
for (int measure = 0; measure < newPnt->GetNumMeasures(); measure++) {
ControlMeasure *cm = newPnt->GetMeasure(iBestIndex);
cm->SetDateTime(Application::DateTime());
cm->SetChooserName("Application cnetref(Resolution)");
//newPnt.UpdateMeasure(cm); // Redesign fixed this
}
}
}
if (*newPnt != origPnt) {
iPointsModified++;
}
if (!bError && !newPnt->IsIgnored() && newPnt->IsReferenceExplicit() && iBestIndex != iRefIndex
&& !bPntEditLock && !bRefLocked) {
iRefChanged++;
PvlGroup pvlRefChangeGrp("ReferenceChangeDetails");
if (iRefIndex >= 0) {
pvlRefChangeGrp += Isis::PvlKeyword("PrevSerialNumber",
origPnt.GetMeasure(iRefIndex)->GetCubeSerialNumber());
pvlRefChangeGrp += Isis::PvlKeyword("PrevResolution", toString(mdResVector[iRefIndex]));
istrTemp = QString((int)origPnt.GetMeasure(iRefIndex)->GetSample());
istrTemp += ",";
istrTemp += QString((int)origPnt.GetMeasure(iRefIndex)->GetLine());
pvlRefChangeGrp += Isis::PvlKeyword("PrevLocation", istrTemp);
}
else {
pvlRefChangeGrp += Isis::PvlKeyword("PrevReference", "Not Set");
}
pvlRefChangeGrp += Isis::PvlKeyword("NewSerialNumber",
newPnt->GetMeasure(iBestIndex)->GetCubeSerialNumber());
QString sKeyName = "NewHighestResolution";
if (meType == Low) {
sKeyName = "NewLeastResolution";
}
else if (meType == Mean) {
pvlRefChangeGrp += Isis::PvlKeyword("MeanResolution", toString(GetMeanResolution()));
sKeyName = "NewResolutionNeartoMean";
}
else if (meType == Nearest) {
sKeyName = "NewResolutionNeartoValue";
}
else if (meType == Range) {
sKeyName = "NewResolutionInRange";
}
pvlRefChangeGrp += Isis::PvlKeyword(sKeyName, toString(mdResVector[iBestIndex]));
istrTemp = QString((int)newPnt->GetMeasure(iBestIndex)->GetSample());
istrTemp += ",";
istrTemp += QString((int)newPnt->GetMeasure(iBestIndex)->GetLine());
pvlRefChangeGrp += Isis::PvlKeyword("NewLocation", istrTemp);
pvlPointObj += pvlRefChangeGrp;
}
else {
pvlPointObj += Isis::PvlKeyword("Reference", "No Change");
}
//pNewNet.UpdatePoint(newPnt); // Redesign fixed this
mPvlLog += pvlPointObj;
mStatus.CheckStatus();
}// end Point
// CnetRef Change Statistics
mStatisticsGrp += Isis::PvlKeyword("PointsModified", toString(iPointsModified));
mStatisticsGrp += Isis::PvlKeyword("ReferenceChanged", toString(iRefChanged));
mStatisticsGrp += Isis::PvlKeyword("MeasuresModified", toString(iMeasuresModified));
mPvlLog += mStatisticsGrp;
}
/** The ISIS smtk main application */
void IsisMain() {
UserInterface &ui = Application::GetUserInterface();
// Open the first cube. It is the left hand image.
Cube lhImage;
CubeAttributeInput &attLeft = ui.GetInputAttribute("FROM");
vector<QString> bandLeft = attLeft.bands();
lhImage.setVirtualBands(bandLeft);
lhImage.open(ui.GetFileName("FROM"),"r");
// Open the second cube, it is geomertricallty altered. We will be matching the
// first to this one by attempting to compute a sample/line offsets
Cube rhImage;
CubeAttributeInput &attRight = ui.GetInputAttribute("MATCH");
vector<QString> bandRight = attRight.bands();
rhImage.setVirtualBands(bandRight);
rhImage.open(ui.GetFileName("MATCH"),"r");
// Ensure only single bands
if (lhImage.bandCount() != 1 || rhImage.bandCount() != 1) {
QString msg = "Input Cubes must have only one band!";
throw IException(IException::User,msg,_FILEINFO_);
}
// Both images must have a Camera and can also have a Projection. We will
// only deal with a Camera, however as a projected, non-mosaicked image
// uses a Projection internal to the Camera object.
Camera *lhCamera = NULL;
Camera *rhCamera = NULL;
try {
lhCamera = lhImage.camera();
rhCamera = rhImage.camera();
}
catch (IException &ie) {
QString msg = "Both input images must have a camera";
throw IException(ie, IException::User, msg, _FILEINFO_);
}
// Since we are generating a DEM, we must turn off any existing
// DEM that may have been initialized with spiceinit.
lhCamera->IgnoreElevationModel(true);
rhCamera->IgnoreElevationModel(true);
// Get serial number
QString serialLeft = SerialNumber::Compose(lhImage, true);
QString serialRight = SerialNumber::Compose(rhImage, true);
// This still precludes band to band registrations.
if (serialLeft == serialRight) {
QString sLeft = FileName(lhImage.fileName()).name();
QString sRight = FileName(rhImage.fileName()).name();
if (sLeft == sRight) {
QString msg = "Cube Serial Numbers must be unique - FROM=" + serialLeft +
", MATCH=" + serialRight;
throw IException(IException::User,msg,_FILEINFO_);
}
serialLeft = sLeft;
serialRight = sRight;
}
Progress prog;
prog.SetText("Finding Initial Seeds");
int nl = lhImage.lineCount();
int ns = lhImage.sampleCount();
BigInt numAttemptedInitialPoints = 0;
// Declare Gruen matcher
SmtkMatcher matcher(ui.GetFileName("REGDEF"), &lhImage, &rhImage);
// Get line/sample linc/sinc parameters
int space = ui.GetInteger("SPACE");
int linc (space), sinc(space);
// Do we have a seed points from a control net file?
bool useseed = ui.WasEntered("CNET");
// Base points on an input cnet
SmtkQStack gstack;
double lastEigen(0.0);
if (useseed) {
ControlNet cnet(ui.GetFileName("CNET"));
prog.SetMaximumSteps(cnet.GetNumPoints());
prog.CheckStatus();
gstack.reserve(cnet.GetNumPoints());
for (int cpIndex = 0; cpIndex < cnet.GetNumPoints(); cpIndex ++) {
ControlPoint *cp = cnet.GetPoint(cpIndex);
if (!cp->IsIgnored()) {
ControlMeasure *cmLeft(0), *cmRight(0);
for(int cmIndex = 0; cmIndex < cp->GetNumMeasures(); cmIndex ++) {
ControlMeasure *cm = cp->GetMeasure(cmIndex);
if (!cm->IsIgnored()) {
if (cm->GetCubeSerialNumber() == serialLeft)
cmLeft = cp->GetMeasure(cmIndex);
if (cm->GetCubeSerialNumber() == serialRight)
cmRight = cp->GetMeasure(cmIndex);
}
}
// If we have both left and right images in the control point, save it
if ( (cmLeft != 0) && (cmRight != 0) ) {
Coordinate left = Coordinate(cmLeft->GetLine(), cmLeft->GetSample());
Coordinate right = Coordinate(cmRight->GetLine(), cmRight->GetSample());
SmtkPoint spnt = matcher.Create(left, right);
// Insert the point (unregistered)
if ( spnt.isValid() ) {
int line = (int) cmLeft->GetLine();
int samp = (int) cmLeft->GetSample();
matcher.isValid(spnt);
gstack.insert(qMakePair(line, samp), spnt);
lastEigen = spnt.GoodnessOfFit();
}
}
}
prog.CheckStatus();
}
}
else {
// We want to create a grid of control points that is N rows by M columns.
int rows = (lhImage.lineCount() + linc - 1)/linc;
int cols = (lhImage.sampleCount() + sinc - 1)/sinc;
prog.SetMaximumSteps(rows * cols);
prog.CheckStatus();
// First pass stack and eigen value statistics
SmtkQStack fpass;
fpass.reserve(rows * cols);
Statistics temp_mev;
// Loop through grid of points and get statistics to compute
// initial set of points
for (int line = linc / 2 + 1; line < nl; line += linc) {
for (int samp = sinc / 2 + 1 ; samp < ns; samp += sinc) {
numAttemptedInitialPoints ++;
SmtkPoint spnt = matcher.Register(Coordinate(line,samp));
if ( spnt.isValid() ) {
matcher.isValid(spnt);
fpass.insert(qMakePair(line, samp), spnt);
temp_mev.AddData(spnt.GoodnessOfFit());
}
prog.CheckStatus();
}
}
// Now select a subset of fpass points as the seed points
cout << "Number of Potential Seed Points: " << fpass.size() << "\n";
cout << "Min / Max Eigenvalues Matched: " << temp_mev.Minimum() << ", "
<< temp_mev.Maximum() << "\n";
// How many seed points are requested
double nseed = ui.GetDouble("NSEED");
int inseed;
if (nseed >= 1.0) inseed = (int) nseed;
else if (nseed > 0.0) inseed = (int) (nseed * (double) (fpass.size()));
else inseed = (int) ((double) (fpass.size()) * 0.05);
double seedsample = ui.GetDouble("SEEDSAMPLE");
// Generate a new stack
gstack.reserve(inseed);
while ((gstack.size() < inseed) && (!fpass.isEmpty() )) {
SmtkQStack::iterator bestm;
if (seedsample <= 0.0) {
bestm = matcher.FindSmallestEV(fpass);
}
else {
bestm = matcher.FindExpDistEV(fpass, seedsample, temp_mev.Minimum(),
temp_mev.Maximum());
}
// Add point to stack
if (bestm != fpass.end()) {
Coordinate right = bestm.value().getRight();
matcher.isValid(bestm.value());
gstack.insert(bestm.key(), bestm.value());
lastEigen = bestm.value().GoodnessOfFit();
fpass.erase(bestm);
}
}
// If a user wants to see the seed network, write it out here
if (ui.WasEntered("OSEEDNET")) {
WriteCnet(ui.GetFileName("OSEEDNET"), gstack,
lhCamera->target()->name(), serialLeft, serialRight);
}
}
///////////////////////////////////////////////////////////////////////
// All done with seed points. Sanity check ensures we actually found
// some.
///////////////////////////////////////////////////////////////////////
if (gstack.size() <= 0) {
QString msg = "No seed points found - may need to check Gruen parameters.";
throw IException(IException::User, msg, _FILEINFO_);
}
// Report seed point status
if (!useseed) {
cout << "Number of Seed Points used: " << gstack.size() << "\n";
cout << "EV of last Seed Point: " << lastEigen << "\n";
}
else {
cout << "Number of Manual Seed Points: " << gstack.size() << "\n";
}
// Use seed points (in stack) to grow
SmtkQStack bmf;
bmf.reserve(gstack.size()); // Probably need much more but for starters...
BigInt numOrigPoints = gstack.size();
BigInt passpix2 = 0;
int subcbox = ui.GetInteger("SUBCBOX");
int halfBox((subcbox-1)/2);
while (!gstack.isEmpty()) {
SmtkQStackIter cstack = matcher.FindSmallestEV(gstack);
// Print number on stack
if ((gstack.size() % 1000) == 0) {
cout << "Number on Stack: " << gstack.size()
<< ". " << cstack.value().GoodnessOfFit() << "\n";
}
// Test to see if already determined
SmtkQStackIter bmfPt = bmf.find(cstack.key());
if (bmfPt == bmf.end()) {
// Its not in the final stack, process it
// Retrieve the point
SmtkPoint spnt = cstack.value();
// Register if its not already registered
if (!spnt.isRegistered()) {
spnt = matcher.Register(spnt, spnt.getAffine());
}
// Still must check for validity if the point was just registered,
// otherwise should be good
if ( spnt.isValid() ) {
passpix2++;
bmf.insert(cstack.key(), spnt); // inserts (0,0) offset excluded below
int line = cstack.key().first;
int sample = cstack.key().second;
// Determine match points
double eigen(spnt.GoodnessOfFit());
for (int sampBox = -halfBox ; sampBox <= halfBox ; sampBox++ ) {
int csamp = sample + sampBox;
for (int lineBox = -halfBox ; lineBox <= halfBox ; lineBox++) {
int cline = line + lineBox;
if ( !( (sampBox == 0) && (lineBox == 0)) ) {// Already added above
SmtkQPair dupPair(cline, csamp);
SmtkQStackIter temp = bmf.find(dupPair);
SmtkPoint bmfpnt;
if (temp != bmf.end()) {
if (temp.value().GoodnessOfFit() > eigen) {
// Create cloned point with better fit
bmfpnt = matcher.Clone(spnt, Coordinate(cline,csamp));
}
}
else { // ISIS2 is BMF(SAMP,LINE,7) .EQ VALID_MAX4)
// Clone new point for insert
bmfpnt = matcher.Clone(spnt, Coordinate(cline,csamp));
}
// Add if good point
if (bmfpnt.isValid()) {
bmf.insert(dupPair, bmfpnt);
}
}
}
}
// Grow stack with spacing adding info to stack
for (int i = -1 ; i <= 1 ; i ++) { // Sample
for (int j = -1 ; j <= 1 ; j ++) { // Line
// Don't re-add the original sample, line
if ( !((i == 0) && (j == 0)) ) {
// Grow based upon spacing
double ssamp = sample + (i * space);
double sline = line + (j * space);
Coordinate pnt = Coordinate(sline, ssamp);
SmtkPoint gpnt = matcher.Clone(spnt, pnt);
if ( gpnt.isValid() ) {
SmtkQPair growpt((int) sline, (int) ssamp);
// double check we don't have a finalized result at this position
SmtkQStackIter temp = bmf.find(growpt);
if(temp == bmf.end()) {
gstack.insert(growpt, gpnt);
}
}
}
}
}
}
}
// Remove the current point from the grow stack (hole)
gstack.erase(cstack);
}
/////////////////////////////////////////////////////////////////////////
// All done with creating points. Perform output options.
/////////////////////////////////////////////////////////////////////////
// If a TO parameter was specified, create DEM with errors
if (ui.WasEntered("TO")) {
// Create the output DEM
cout << "\nCreating output DEM from " << bmf.size() << " points.\n";
Process p;
Cube *icube = p.SetInputCube("FROM");
Cube *ocube = p.SetOutputCube("TO", icube->sampleCount(),
icube->lineCount(), 3);
p.ClearInputCubes();
int boxsize = ui.GetInteger("BOXSIZE");
double plotdist = ui.GetDouble("PLOTDIST");
TileManager dem(*ocube), eigen(*ocube), stErr(*ocube);
dem.SetTile(1, 1); // DEM Data/elevation
stErr.SetTile(1, 2); // Error in stereo computation
eigen.SetTile(1, 3); // Eigenvalue of the solution
int nBTiles(eigen.Tiles()/3); // Total tiles / 3 bands
prog.SetText("Creating DEM");
prog.SetMaximumSteps(nBTiles);
prog.CheckStatus();
Statistics stAng;
while ( !eigen.end() ) { // Must use the last band for this!!
PointPlot tm = for_each(bmf.begin(), bmf.end(), PointPlot(dem, plotdist));
tm.FillPoints(*lhCamera, *rhCamera, boxsize, dem, stErr, eigen, &stAng);
ocube->write(dem);
ocube->write(stErr);
ocube->write(eigen);
dem.next();
stErr.next();
eigen.next();
prog.CheckStatus();
}
// Report Stereo separation angles
PvlGroup stresultsPvl("StereoSeparationAngle");
stresultsPvl += PvlKeyword("Minimum", toString(stAng.Minimum()), "deg");
stresultsPvl += PvlKeyword("Average", toString(stAng.Average()), "deg");
stresultsPvl += PvlKeyword("Maximum", toString(stAng.Maximum()), "deg");
stresultsPvl += PvlKeyword("StandardDeviation", toString(stAng.StandardDeviation()), "deg");
Application::Log(stresultsPvl);
// Update the label with BandBin keywords
PvlKeyword filter("FilterName", "Elevation", "meters");
filter.addValue("ElevationError", "meters");
filter.addValue("GoodnessOfFit", "unitless");
PvlKeyword center("Center", "1.0");
center.addValue("1.0");
center.addValue("1.0");
PvlGroup &bandbin = ocube->label()->findGroup("BandBin", PvlObject::Traverse);
bandbin.addKeyword(filter, PvlContainer::Replace);
bandbin.addKeyword(center, PvlContainer::Replace);
center.setName("Width");
bandbin.addKeyword(center, PvlContainer::Replace);
p.EndProcess();
}
// If a cnet file was entered, write the ControlNet pvl to the file
if (ui.WasEntered("ONET")) {
WriteCnet(ui.GetFileName("ONET"), bmf, lhCamera->target()->name(), serialLeft,
serialRight);
}
// Create output data
PvlGroup totalPointsPvl("Totals");
totalPointsPvl += PvlKeyword("AttemptedPoints", toString(numAttemptedInitialPoints));
totalPointsPvl += PvlKeyword("InitialSuccesses", toString(numOrigPoints));
totalPointsPvl += PvlKeyword("GrowSuccesses", toString(passpix2));
totalPointsPvl += PvlKeyword("ResultingPoints", toString(bmf.size()));
Application::Log(totalPointsPvl);
Pvl arPvl = matcher.RegistrationStatistics();
PvlGroup smtkresultsPvl("SmtkResults");
smtkresultsPvl += PvlKeyword("SpiceOffImage", toString(matcher.OffImageErrorCount()));
smtkresultsPvl += PvlKeyword("SpiceDistanceError", toString(matcher.SpiceErrorCount()));
arPvl.addGroup(smtkresultsPvl);
for(int i = 0; i < arPvl.groups(); i++) {
Application::Log(arPvl.group(i));
}
// add the auto registration information to print.prt
PvlGroup autoRegTemplate = matcher.RegTemplate();
Application::Log(autoRegTemplate);
// Don't need the cubes opened anymore
lhImage.close();
rhImage.close();
}
ControlNet * CnetEditorWidget::filteredNetwork() const {
ControlNet * filteredCnet = new ControlNet(*m_controlNet);
QList<AbstractTreeItem *> networkItems = m_pointModel->getItems(0, -1,
AbstractTreeModel::MeasureItems | AbstractTreeModel::PointItems, true);
// Iterate through our copy of the cnet, deleting anything that doesn't
// exactly match our networkItems.
for (int pointIndex = filteredCnet->GetNumPoints() - 1;
pointIndex >= 0;
pointIndex--) {
if (networkItems.isEmpty()) {
ControlPoint *cp = filteredCnet->GetPoint(pointIndex);
cp->SetEditLock(false);
for (int measureIndex = 0;
measureIndex < cp->GetNumMeasures();
measureIndex++) {
cp->GetMeasure(measureIndex)->SetEditLock(false);
}
filteredCnet->DeletePoint(cp);
}
else if (networkItems.last()->getPointerType() ==
AbstractTreeItem::Point) {
ControlPoint *networkItemsCp =
(ControlPoint *)networkItems.last()->getPointer();
ControlPoint *cp = filteredCnet->GetPoint(pointIndex);
if (cp->GetId() != networkItemsCp->GetId()) {
cp->SetEditLock(false);
for (int measureIndex = 0;
measureIndex < cp->GetNumMeasures();
measureIndex++) {
cp->GetMeasure(measureIndex)->SetEditLock(false);
}
filteredCnet->DeletePoint(cp);
}
else {
networkItems.removeLast();
}
}
else if (networkItems.last()->getPointerType() ==
AbstractTreeItem::Measure) {
ControlPoint *cp = filteredCnet->GetPoint(pointIndex);
ControlMeasure *networkItemsCm =
(ControlMeasure *)networkItems.last()->getPointer();
if (cp->GetId() != networkItemsCm->Parent()->GetId()) {
cp->SetEditLock(false);
for (int measureIndex = 0;
measureIndex < cp->GetNumMeasures();
measureIndex++) {
cp->GetMeasure(measureIndex)->SetEditLock(false);
}
filteredCnet->DeletePoint(cp);
}
else {
// Our CP stays, figure out which CMs stay.
for (int measureIndex = cp->GetNumMeasures() - 1;
networkItemsCm && measureIndex >= 0;
measureIndex--) {
ControlMeasure *cm = cp->GetMeasure(measureIndex);
if (cm->GetCubeSerialNumber() !=
networkItemsCm->GetCubeSerialNumber()) {
cm->SetEditLock(false);
cp->Delete(cm);
}
else {
networkItems.removeLast();
networkItemsCm = NULL;
if (networkItems.last()->getPointerType() ==
AbstractTreeItem::Measure) {
networkItemsCm =
(ControlMeasure *)networkItems.last()->getPointer();
}
}
}
// We still need to verify the copied CP at this index... although
// nothing should go wrong, we know things do go wrong so do
// the verify instead of just tossing the last networkItems item.
pointIndex++;
}
}
}
return filteredCnet;
}
/**
* Slot to set apriori on selected Points from Navigator list box
*
* @author 2011-03-24 Tracie Sucharski
*
* @internal
* @todo This method should be temporary until the control point editor
* comes online. If this stick around, needs to be re-disigned-
* put in a separate class??
*
* @history 2011-04-04 Tracie Sucharski - Grey out userEntered if more than
* a single point is selected. Grey out lat,lon,radius
* edits if UserEntered is not selected.
* @history 2011-04-13 Tracie Sucharski - If single point selected, fill in
* LineEdit's with current controlPoint values.
* @history 2011-04-19 Tracie Sucharski - Redesign using modeless dialog.
* @history 2011-04-26 Tracie Sucharski - Move from QnetNavTool to
* QnetSetAprioriDialog.
*/
void QnetSetAprioriDialog::setApriori() {
double latSigma = Null;
double lat = Null;
double lonSigma = Null;
double lon = Null;
double radiusSigma = Null;
double radius = Null;
if (latitudeConstraintsGroupBox->isChecked()) {
if (userEnteredRadioButton->isChecked() && aprioriLatEdit->text() != "") {
lat = aprioriLatEdit->text().toDouble();
}
if (latSigmaEdit->text() != "") {
latSigma = latSigmaEdit->text().toDouble();
}
}
if (longitudeConstraintsGroupBox->isChecked()) {
if (userEnteredRadioButton->isChecked() && aprioriLonEdit->text() != "") {
lon = aprioriLonEdit->text().toDouble();
}
if (lonSigmaEdit->text() != "") {
lonSigma = lonSigmaEdit->text().toDouble();
}
}
if (radiusConstraintsGroupBox->isChecked()) {
if (userEnteredRadioButton->isChecked() && aprioriRadiusEdit->text() != "") {
radius = aprioriRadiusEdit->text().toDouble();
}
if (radiusSigmaEdit->text() != "") {
radiusSigma = radiusSigmaEdit->text().toDouble();
}
}
// If the SetAprioriPoint group box selected, set aprioriSurfacePoint for
// those points not editLocked.
for (int i = 0; i < m_points.size(); i++) {
QString id = m_points.at(i)->text();
ControlPoint *pt = m_qnetTool->controlNet()->GetPoint(id);
if (pt->IsEditLocked()) continue;
if (!pt->HasAprioriCoordinates()) {
QString msg = "Point [" + id + "] does not have an Apriori coordinate. "
"Make sure to save the ground source measurement then the Point before "
"setting the sigmas. The sigmas for this point will not be set.";
QMessageBox::warning((QWidget *)parent(), "Warning", msg);
continue;
}
if (pointSourceGroupBox->isChecked()) {
if (referenceMeasureRadioButton->isChecked()) {
ControlMeasure *m = pt->GetRefMeasure();
// Find camera from network camera list
int camIndex = m_qnetTool->serialNumberList()->SerialNumberIndex(
m->GetCubeSerialNumber());
Camera *cam = m_qnetTool->controlNet()->Camera(camIndex);
cam->SetImage(m->GetSample(),m->GetLine());
pt->SetAprioriSurfacePoint(cam->GetSurfacePoint());
pt->SetAprioriSurfacePointSource(ControlPoint::SurfacePointSource::Reference);
}
else if (averageMeasuresRadioButton->isChecked()) {
pt->ComputeApriori();
// Do not need to set AprioriSurfacePointSource or AprioriRadiusSource,
// ComputeApriori does this for us.
}
else if (userEnteredRadioButton->isChecked()) {
pt->SetAprioriSurfacePoint(SurfacePoint(
Latitude(lat, Angle::Degrees),
Longitude(lon, Angle::Degrees),
Distance(radius,Distance::Meters)));
pt->SetAprioriSurfacePointSource(ControlPoint::SurfacePointSource::User);
pt->SetAprioriRadiusSource(ControlPoint::RadiusSource::User);
}
}
try {
// Read Surface point from the control point and set the sigmas,
// first set the target radii
SurfacePoint spt = pt->GetAprioriSurfacePoint();
vector<Distance> targetRadii = m_qnetTool->controlNet()->GetTargetRadii();
spt.SetRadii(Distance(targetRadii[0]),
Distance(targetRadii[1]),
Distance(targetRadii[2]));
spt.SetSphericalSigmasDistance(Distance(latSigma,Distance::Meters),
Distance(lonSigma,Distance::Meters),
Distance(radiusSigma,Distance::Meters));
// Write the surface point back out to the controlPoint
pt->SetAprioriSurfacePoint(spt);
// TODO: Is the following line necessary, should error be thrown
// for free or fixed pts?
//pt->SetType(ControlPoint::Constrained);
emit pointChanged(id);
emit netChanged();
}
catch (IException &e) {
QString message = "Error setting sigmas. \n";
message += e.toString();
QMessageBox::critical((QWidget *)parent(),"Error",message);
QApplication::restoreOverrideCursor();
// Sigmas failed, but surface pt coordinate was set
emit pointChanged(id);
emit netChanged();
return;
}
}
}
