int main(int argc, char** argv)
{
Opm::parameter::ParameterGroup param(argc, argv);
CpGrid grid;
grid.init(param);
typedef CpGrid::LeafGridView View;
View g = grid.leafView();
typedef FieldVector<double, 3> Pt;
int c_local = 0;
for (View::Codim<0>::Iterator c_it = g.begin<0>(); c_it != g.end<0>(); ++c_it, ++c_local) {
Pt cell_centroid = c_it->geometry().center();
int f_local = 0;
bool trouble = false;
for (View::IntersectionIterator f_it = g.ibegin(*c_it); f_it != g.iend(*c_it); ++f_it, ++f_local) {
Pt face_centroid = f_it->geometry().center();
Pt face_normal = f_it->centerUnitOuterNormal();
if (face_normal*(face_centroid - cell_centroid) < 0.0) {
trouble = true;
std::cout << "Encountered troublesome geometry (centroid difference dot normal is negative) "
"in cell " << c_local << " local face " << f_local << std::endl;
}
}
if (trouble) {
std::cout << "Cell " << c_local << " had a total of " << f_local << " faces." << std::endl;
}
}
}
int main(int argc, char** argv)
{
// Create a grid.
Opm::parameter::ParameterGroup param(argc, argv);
CpGrid grid;
grid.init(param);
}
int main(int argc, char** argv)
{
parameter::ParameterGroup param(argc, argv);
CpGrid grid;
grid.init(param);
grid.setUniqueBoundaryIds(true);
GridInterfaceEuler<CpGrid> gi(grid);
typedef FlowBC FBC;
boost::array<FBC, 6> fcond = {{ FBC(FBC::Periodic, 1.0e5),
FBC(FBC::Periodic, -1.0e5),
FBC(FBC::Periodic, 0.0),
FBC(FBC::Periodic, 0.0),
FBC(FBC::Neumann, 0.0),
FBC(FBC::Neumann, 0.0) }};
typedef SatBC SBC;
boost::array<SBC, 6> scond = {{ SBC(SBC::Periodic, 0.0),
SBC(SBC::Periodic, 0.0),
SBC(SBC::Periodic, 0.0),
SBC(SBC::Periodic, 0.0),
SBC(SBC::Dirichlet, 0.0),
SBC(SBC::Dirichlet, 0.0) }};
BasicBoundaryConditions<true, true> bcs;
createPeriodic(bcs, gi, fcond, scond);
std::cout << bcs;
}
inline void setupGridAndProps(const Opm::parameter::ParameterGroup& param,
CpGrid& grid,
ResProp<3>& res_prop)
{
// Initialize grid and reservoir properties.
// Parts copied from CpGrid::init().
std::string fileformat = param.getDefault<std::string>("fileformat", "cartesian");
if (fileformat == "sintef_legacy") {
std::string grid_prefix = param.get<std::string>("grid_prefix");
grid.readSintefLegacyFormat(grid_prefix);
MESSAGE("Warning: We do not yet read legacy reservoir properties. Using defaults.");
res_prop.init(grid.size(0));
} else if (fileformat == "eclipse") {
Opm::EclipseGridParser parser(param.get<std::string>("filename"));
double z_tolerance = param.getDefault<double>("z_tolerance", 0.0);
bool periodic_extension = param.getDefault<bool>("periodic_extension", false);
bool turn_normals = param.getDefault<bool>("turn_normals", false);
grid.processEclipseFormat(parser, z_tolerance, periodic_extension, turn_normals);
double perm_threshold_md = param.getDefault("perm_threshold_md", 0.0);
double perm_threshold = Opm::unit::convert::from(perm_threshold_md, Opm::prefix::milli*Opm::unit::darcy);
std::string rock_list = param.getDefault<std::string>("rock_list", "no_list");
std::string* rl_ptr = (rock_list == "no_list") ? 0 : &rock_list;
bool use_j = param.getDefault("use_jfunction_scaling", useJ<ResProp<3> >());
double sigma = 1.0;
double theta = 0.0;
if (use_j) {
sigma = param.getDefault("sigma", sigma);
theta = param.getDefault("theta", theta);
}
if (param.has("viscosity1") || param.has("viscosity2")) {
double v1 = param.getDefault("viscosity1", 0.001);
double v2 = param.getDefault("viscosity2", 0.003);
res_prop.setViscosities(v1, v2);
}
res_prop.init(parser, grid.globalCell(), perm_threshold, rl_ptr,
use_j, sigma, theta);
} else if (fileformat == "cartesian") {
array<int, 3> dims = {{ param.getDefault<int>("nx", 1),
param.getDefault<int>("ny", 1),
param.getDefault<int>("nz", 1) }};
array<double, 3> cellsz = {{ param.getDefault<double>("dx", 1.0),
param.getDefault<double>("dy", 1.0),
param.getDefault<double>("dz", 1.0) }};
grid.createCartesian(dims, cellsz);
double default_poro = param.getDefault("default_poro", 0.2);
double default_perm_md = param.getDefault("default_perm_md", 100.0);
double default_perm = Opm::unit::convert::from(default_perm_md, Opm::prefix::milli*Opm::unit::darcy);
MESSAGE("Warning: For generated cartesian grids, we use uniform reservoir properties.");
res_prop.init(grid.size(0), default_poro, default_perm);
} else {
THROW("Unknown file format string: " << fileformat);
}
if (param.getDefault("use_unique_boundary_ids", false)) {
grid.setUniqueBoundaryIds(true);
}
}
CombinedGridWellGraph::CombinedGridWellGraph(const CpGrid& grid,
const Opm::EclipseStateConstPtr eclipseState,
const double* transmissibilities,
bool pretendEmptyGrid)
: grid_(grid), eclipseState_(eclipseState), transmissibilities_(transmissibilities)
{
if ( pretendEmptyGrid )
{
// wellsGraph not needed
return;
}
wellsGraph_.resize(grid.numCells());
const auto& cpgdim = grid.logicalCartesianSize();
// create compressed lookup from cartesian.
std::vector<Opm::WellConstPtr> wells = eclipseState->getSchedule()->getWells();
std::vector<int> cartesian_to_compressed(cpgdim[0]*cpgdim[1]*cpgdim[2], -1);
int last_time_step = eclipseState->getSchedule()->getTimeMap()->size()-1;
for( int i=0; i < grid.numCells(); ++i )
{
cartesian_to_compressed[grid.globalCell()[i]] = i;
}
// We assume that we know all the wells.
for (auto wellIter= wells.begin(); wellIter != wells.end(); ++wellIter) {
Opm::WellConstPtr well = (*wellIter);
std::set<int> well_indices;
Opm::CompletionSetConstPtr completionSet = well->getCompletions(last_time_step);
for (size_t c=0; c<completionSet->size(); c++) {
Opm::CompletionConstPtr completion = completionSet->get(c);
int i = completion->getI();
int j = completion->getJ();
int k = completion->getK();
int cart_grid_idx = i + cpgdim[0]*(j + cpgdim[1]*k);
int compressed_idx = cartesian_to_compressed[cart_grid_idx];
if ( compressed_idx >= 0 ) // Ignore completions in inactive cells.
{
well_indices.insert(compressed_idx);
}
}
addCompletionSetToGraph(well_indices);
}
}
inline void setupGridAndPropsEclipse(const Opm::EclipseGridParser& parser,
double z_tolerance,
bool periodic_extension,
bool turn_normals,
bool clip_z,
bool unique_bids,
double perm_threshold,
const std::string& rock_list,
bool use_jfunction_scaling,
double sigma,
double theta,
CpGrid& grid,
ResProp<3>& res_prop)
{
grid.processEclipseFormat(parser, z_tolerance, periodic_extension, turn_normals, clip_z);
const std::string* rl_ptr = (rock_list == "no_list") ? 0 : &rock_list;
res_prop.init(parser, grid.globalCell(), perm_threshold, rl_ptr, use_jfunction_scaling, sigma, theta);
if (unique_bids) {
grid.setUniqueBoundaryIds(true);
}
}
CombinedGridWellGraph::CombinedGridWellGraph(const CpGrid& grid,
const Opm::EclipseState* eclipseState,
const double* transmissibilities,
bool pretendEmptyGrid)
: grid_(grid), transmissibilities_(transmissibilities)
{
if ( pretendEmptyGrid )
{
// wellsGraph not needed
return;
}
wellsGraph_.resize(grid.numCells());
const auto& cpgdim = grid.logicalCartesianSize();
// create compressed lookup from cartesian.
std::vector<int> cartesian_to_compressed(cpgdim[0]*cpgdim[1]*cpgdim[2], -1);
for( int i=0; i < grid.numCells(); ++i )
{
cartesian_to_compressed[grid.globalCell()[i]] = i;
}
well_indices_.init(*eclipseState, cpgdim, cartesian_to_compressed);
std::vector<int>().swap(cartesian_to_compressed); // free memory.
addCompletionSetToGraph();
}
std::vector<int> zoltanGraphPartitionGridOnRoot(const CpGrid& cpgrid,
const CollectiveCommunication<MPI_Comm>& cc,
int root)
{
int rc;
float ver;
struct Zoltan_Struct *zz;
int changes, numGidEntries, numLidEntries, numImport, numExport;
ZOLTAN_ID_PTR importGlobalGids, importLocalGids, exportGlobalGids, exportLocalGids;
int *importProcs, *importToPart, *exportProcs, *exportToPart;
int argc=0;
char** argv;
rc = Zoltan_Initialize(argc, argv, &ver);
zz = Zoltan_Create(cc);
if ( rc != ZOLTAN_OK )
{
OPM_THROW(std::runtime_error, "Could not initialize Zoltan!");
}
Zoltan_Set_Param(zz, "DEBUG_LEVEL", "0");
Zoltan_Set_Param(zz, "LB_METHOD", "GRAPH");
Zoltan_Set_Param(zz, "LB_APPROACH", "PARTITION");
Zoltan_Set_Param(zz, "NUM_GID_ENTRIES", "1");
Zoltan_Set_Param(zz, "NUM_LID_ENTRIES", "1");
Zoltan_Set_Param(zz, "RETURN_LISTS", "ALL");
Zoltan_Set_Param(zz, "DEBUG_LEVEL", "3");
Zoltan_Set_Param(zz, "CHECK_GRAPH", "2");
Zoltan_Set_Param(zz, "PHG_EDGE_SIZE_THRESHOLD", ".35"); /* 0-remove all, 1-remove none */
bool pretendEmptyGrid = cc.rank()!=root;
Dune::cpgrid::setCpGridZoltanGraphFunctions(zz, cpgrid, pretendEmptyGrid);
rc = Zoltan_LB_Partition(zz, /* input (all remaining fields are output) */
&changes, /* 1 if partitioning was changed, 0 otherwise */
&numGidEntries, /* Number of integers used for a global ID */
&numLidEntries, /* Number of integers used for a local ID */
&numImport, /* Number of vertices to be sent to me */
&importGlobalGids, /* Global IDs of vertices to be sent to me */
&importLocalGids, /* Local IDs of vertices to be sent to me */
&importProcs, /* Process rank for source of each incoming vertex */
&importToPart, /* New partition for each incoming vertex */
&numExport, /* Number of vertices I must send to other processes*/
&exportGlobalGids, /* Global IDs of the vertices I must send */
&exportLocalGids, /* Local IDs of the vertices I must send */
&exportProcs, /* Process to which I send each of the vertices */
&exportToPart); /* Partition to which each vertex will belong */
int size = cpgrid.numCells();
int rank = cc.rank();
std::vector<int> parts=std::vector<int>(size, rank);
for ( int i=0; i < numExport; ++i )
{
parts[exportLocalGids[i]] = exportProcs[i];
}
cc.broadcast(&parts[0], parts.size(), root);
Zoltan_LB_Free_Part(&exportGlobalGids, &exportLocalGids, &exportProcs, &exportToPart);
Zoltan_LB_Free_Part(&importGlobalGids, &importLocalGids, &importProcs, &importToPart);
Zoltan_Destroy(&zz);
return parts;
}
int main(int argc, char** argv)
{
typedef Dune::GridInterfaceEuler<CpGrid> GI;
typedef GI ::CellIterator CI;
typedef CI ::FaceIterator FI;
typedef Dune::BasicBoundaryConditions<true, false> BCs;
typedef Dune::ReservoirPropertyCapillary<3> RI;
typedef Dune::IncompFlowSolverHybrid<GI, RI, BCs,
Dune::MimeticIPEvaluator> FlowSolver;
Opm::parameter::ParameterGroup param(argc, argv);
CpGrid grid;
grid.init(param);
//grid.setUniqueBoundaryIds(true);
GridInterfaceEuler<CpGrid> g(grid);
typedef Dune::FlowBC BC;
BCs flow_bc(7);
#define BCDIR 4
#if BCDIR == 1
flow_bc.flowCond(1) = BC(BC::Dirichlet, 1.0*Opm::unit::barsa);
flow_bc.flowCond(2) = BC(BC::Dirichlet, 0.0*Opm::unit::barsa);
#elif BCDIR == 2
flow_bc.flowCond(3) = BC(BC::Dirichlet, 1.0*Opm::unit::barsa);
flow_bc.flowCond(4) = BC(BC::Dirichlet, 0.0*Opm::unit::barsa);
#elif BCDIR == 3
flow_bc.flowCond(5) = BC(BC::Dirichlet, 1.0*Opm::unit::barsa);
flow_bc.flowCond(6) = BC(BC::Dirichlet, 0.0*Opm::unit::barsa);
#elif BCDIR == 4
flow_bc.flowCond(5) = BC(BC::Dirichlet, 1.0*Opm::unit::barsa);
#endif
RI r;
r.init(g.numberOfCells());
std::vector<double> permdata;
fill_perm(permdata);
ASSERT (int(permdata.size()) == 3 * 60 * 220 * 85);
Dune::SharedFortranMatrix Perm(60 * 220 * 85, 3, &permdata[0]);
const int imin = param.get<int>("imin");
const int jmin = param.get<int>("jmin");
const int kmin = param.get<int>("kmin");
for (int c = 0; c < g.numberOfCells(); ++c) {
boost::array<int,3> ijk;
grid.getIJK(c, ijk);
ijk[0] += imin; ijk[1] += jmin; ijk[2] += kmin;
const int gc = ijk[0] + 60*(ijk[1] + 220*ijk[2]);
RI::SharedPermTensor K = r.permeabilityModifiable(c);
K(0,0) = 0*0.1*Opm::unit::darcy + 1*Perm(gc,0);
K(1,1) = 0*0.1*Opm::unit::darcy + 1*Perm(gc,1);
K(2,2) = 0*0.1*Opm::unit::darcy + 1*Perm(gc,2);
}
#if 1
CI::Vector gravity;
gravity[0] = gravity[1] = gravity[2] = 0.0;
#if 1
gravity[2] = Opm::unit::gravity;
gravity[2] = 10; //Opm::unit::gravity;
#endif
#endif
FlowSolver solver;
solver.init(g, r, gravity, flow_bc);
#if 1
std::vector<double> src(g.numberOfCells(), 0.0);
std::vector<double> sat(g.numberOfCells(), 0.0);
#if 0
const int nx = param.get<int>("nx");
const int ny = param.get<int>("ny");
const int nz = param.get<int>("nz");
const int
i = 0 + nz*(nx/2 + nx*ny/2 ),
p1 = 0 + nz*(0 + nx*0 ),
p2 = 0 + nz*((nx-1) + nx*0 ),
p3 = 0 + nz*(0 + nx*(ny-1)),
p4 = 0 + nz*((nx-1) + nx*(ny-1));
const double bbl = 0.159 * unit::cubic(unit::meter);
const double irate = 1.0e4 * bbl / unit::day;
for (int z = 0; z < nz; ++z) {
src[i + z] = irate / nz;
src[p1 + z] = -(irate / nz) / 4;
src[p2 + z] = -(irate / nz) / 4;
src[p3 + z] = -(irate / nz) / 4;
src[p4 + z] = -(irate / nz) / 4;
}
#endif
solver.solve(r, sat, flow_bc, src, 5.0e-8, 3);
#endif
#if 1
std::vector<GI::Vector> cell_velocity;
estimateCellVelocity(cell_velocity, g, solver.getSolution());
// Dune's vtk writer wants multi-component data to be flattened.
std::vector<double> cell_velocity_flat(&*cell_velocity.front().begin(),
&*cell_velocity.back().end());
std::vector<double> cell_pressure;
getCellPressure(cell_pressure, g, solver.getSolution());
Dune::VTKWriter<CpGrid::LeafGridView> vtkwriter(grid.leafView());
vtkwriter.addCellData(cell_velocity_flat, "velocity", 3);
vtkwriter.addCellData(cell_pressure, "pressure");
vtkwriter.write("spe10_test_output", Dune::VTKOptions::ascii);
#endif
return 0;
}
int main(int argc, char** argv)
try
{
Dune::MPIHelper::instance(argc,argv); // Dummy if no MPI.
CpGrid grid;
if (argc != 2) {
std::cout << "Usage: grdecl2vtu filename.grdecl" << std::endl;
exit(1);
}
const char* eclipsefilename = argv[1];
#if HAVE_OPM_PARSER
Opm::ParseContext parseContext;
Opm::Parser parser;
auto deck = parser.parseFile(eclipsefilename, parseContext);
// Get logical cartesian grid dimensions.
std::array<size_t, 3> dims;
if (deck.hasKeyword("SPECGRID")) {
const auto& specgridRecord = deck.getKeyword("SPECGRID").getRecord(0);
dims[0] = specgridRecord.getItem("NX").get< int >(0);
dims[1] = specgridRecord.getItem("NY").get< int >(0);
dims[2] = specgridRecord.getItem("NZ").get< int >(0);
} else if (deck.hasKeyword("DIMENS")) {
const auto& dimensRecord = deck.getKeyword("DIMENS").getRecord(0);
dims[0] = dimensRecord.getItem("NX").get< int >(0);
dims[1] = dimensRecord.getItem("NY").get< int >(0);
dims[2] = dimensRecord.getItem("NZ").get< int >(0);
} else {
OPM_THROW(std::runtime_error, "Found neither SPECGRID nor DIMENS in file. At least one is needed.");
}
{
const int* actnum = deck.hasKeyword("ACTNUM") ? deck.getKeyword("ACTNUM").getIntData().data() : nullptr;
Opm::EclipseGrid ecl_grid(deck , actnum);
grid.processEclipseFormat(ecl_grid, false);
}
#endif
VTKWriter<CpGrid::LeafGridView> vtkwriter(grid.leafGridView());
#if HAVE_OPM_PARSER
const std::vector<int>& global_cell = grid.globalCell();
std::vector<double> poros;
condWriteDoubleField(poros, "PORO", deck, global_cell, dims, vtkwriter);
std::vector<double> permxs;
condWriteDoubleField(permxs, "PERMX", deck, global_cell, dims, vtkwriter);
std::vector<double> permys;
condWriteDoubleField(permys, "PERMY", deck, global_cell, dims, vtkwriter);
std::vector<double> permzs;
condWriteDoubleField(permzs, "PERMZ", deck, global_cell, dims, vtkwriter);
std::vector<double> actnums;
condWriteIntegerField(actnums, "ACTNUM", deck, global_cell, dims, vtkwriter);
std::vector<double> satnums;
condWriteIntegerField(satnums, "SATNUM", deck, global_cell, dims, vtkwriter);
std::vector<double> regnums;
condWriteIntegerField(regnums, "REGNUM", deck, global_cell, dims, vtkwriter);
std::vector<double> swats;
condWriteDoubleField(swats, "SWAT", deck, global_cell, dims, vtkwriter);
#endif // #if HAVE_OPM_PARSER
std::string fname(eclipsefilename);
std::string fnamebase = fname.substr(0, fname.find_last_of('.'));
std::cout << "Writing to filename " << fnamebase << ".vtu" << std::endl;
vtkwriter.write(fnamebase, VTK::ascii);
}
catch (const std::exception &e) {
std::cerr << "Program threw an exception: " << e.what() << "\n";
throw;
}