the_hmm.addNewState(state_B_2); the_hmm.addNewState(state_C_2); the_hmm.addNewState(state_AB_3); the_hmm.addNewState(state_C_3); the_hmm.addNewState(state_end); HiddenMarkovModel* ptr = nullptr; HiddenMarkovModel* nullPointer = nullptr; HMMState* state_ptr = nullptr; HMMState* state_ptr2 = nullptr; HMMState* state_ptr3 = new HMMState("base", true); HMMState* state_nullPointer = nullptr; // Hidden Markov Model State Tests START_SECTION([EXTRA](HMMState())) state_ptr = new HMMState(); TEST_NOT_EQUAL(state_ptr, state_nullPointer) END_SECTION START_SECTION([EXTRA](virtual ~HMMState())) delete state_ptr; END_SECTION state_ptr = nullptr; START_SECTION([EXTRA](HMMState(const String& name, bool hidden = true))) state_ptr = new HMMState("state_name_hidden", true); TEST_NOT_EQUAL(state_ptr, state_nullPointer) state_ptr2 = new HMMState("state_name_emitting", false); TEST_NOT_EQUAL(state_ptr2, state_nullPointer) END_SECTION
CVMappingTerm* ptr = nullptr; CVMappingTerm* nullPointer = nullptr; START_SECTION(CVMappingTerm()) { ptr = new CVMappingTerm(); TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(virtual ~CVMappingTerm()) { delete ptr; } END_SECTION ptr = new CVMappingTerm(); START_SECTION((CVMappingTerm(const CVMappingTerm &rhs))) { CVMappingTerm cvmt; cvmt.setAccession("my_test_accession"); TEST_STRING_EQUAL(CVMappingTerm(cvmt).getAccession(), "my_test_accession") cvmt.setUseTermName(true); TEST_EQUAL(CVMappingTerm(cvmt).getUseTermName(), true) cvmt.setUseTermName(false); TEST_EQUAL(CVMappingTerm(cvmt).getUseTermName(), false) cvmt.setUseTerm(true); TEST_EQUAL(CVMappingTerm(cvmt).getUseTerm(), true)
#include <OpenMS/FORMAT/DTAFile.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(NeutralLossDiffFilter, "$Id$") ///////////////////////////////////////////////////////////// NeutralLossDiffFilter* e_ptr = 0; NeutralLossDiffFilter* e_nullPointer = 0; START_SECTION((NeutralLossDiffFilter())) e_ptr = new NeutralLossDiffFilter; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~NeutralLossDiffFilter())) delete e_ptr; END_SECTION e_ptr = new NeutralLossDiffFilter(); START_SECTION((NeutralLossDiffFilter(const NeutralLossDiffFilter& source))) NeutralLossDiffFilter copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
MascotGenericFile* ptr = 0; MascotGenericFile* nullPointer = 0; START_SECTION(MascotGenericFile()) { ptr = new MascotGenericFile(); TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(virtual ~MascotGenericFile()) { delete ptr; } END_SECTION ptr = new MascotGenericFile(); START_SECTION((template < typename MapType > void load(const String &filename, MapType &exp))) { PeakMap exp; ptr->load(OPENMS_GET_TEST_DATA_PATH("MascotInfile_test.mascot_in"), exp); TEST_EQUAL(exp.size(), 1) TEST_EQUAL(exp.begin()->size(), 9) } END_SECTION START_SECTION((void store(std::ostream &os, const String &filename, const PeakMap &experiment, bool compact = false))) { PeakMap exp;
/////////////////////////// START_TEST(ZhangSimilarityScore, "$Id$") ///////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////// using namespace OpenMS; using namespace std; ZhangSimilarityScore* ptr = 0; ZhangSimilarityScore* nullPointer = 0; START_SECTION(ZhangSimilarityScore()) ptr = new ZhangSimilarityScore(); TEST_NOT_EQUAL(ptr, nullPointer) END_SECTION START_SECTION(~ZhangSimilarityScore()) delete ptr; END_SECTION ptr = new ZhangSimilarityScore(); START_SECTION(ZhangSimilarityScore(const ZhangSimilarityScore& source)) ZhangSimilarityScore copy(*ptr); TEST_EQUAL(copy.getName(), ptr->getName()); TEST_EQUAL(copy.getParameters(), ptr->getParameters()); END_SECTION
TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(~ClusterAnalyzer()) { delete ptr; } END_SECTION START_SECTION((ClusterAnalyzer(const ClusterAnalyzer &source))) { NOT_TESTABLE } END_SECTION ptr = new ClusterAnalyzer(); START_SECTION((std::vector< float > averageSilhouetteWidth(const std::vector< BinaryTreeNode > &tree, const DistanceMatrix< float > &original))) { DistanceMatrix<float> matrix(6,666); matrix.setValue(1,0,0.5f); matrix.setValue(2,0,0.8f); matrix.setValue(2,1,0.3f); matrix.setValue(3,0,0.6f); matrix.setValue(3,1,0.8f); matrix.setValue(3,2,0.8f); matrix.setValue(4,0,0.8f); matrix.setValue(4,1,0.8f); matrix.setValue(4,2,0.8f); matrix.setValue(4,3,0.4f);
/////////////////////////// START_TEST(PILISModel_test, "$Id$") ///////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////// using namespace OpenMS; using namespace std; PILISModel* ptr = 0; PILISModel* nullPointer = 0; const AASequence peptide = AASequence::fromString("DFPIANGER"); START_SECTION(PILISModel()) ptr = new PILISModel(); TEST_NOT_EQUAL(ptr, nullPointer) END_SECTION START_SECTION(~PILISModel()) delete ptr; END_SECTION ptr = new PILISModel(); START_SECTION(PILISModel(const PILISModel& model)) PILISModel copy(*ptr); TEST_EQUAL(copy.getParameters(), ptr->getParameters()) END_SECTION START_SECTION(PILISModel& operator = (const PILISModel& mode))
#include <map> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(ComplementMarker, "$Id$") ///////////////////////////////////////////////////////////// ComplementMarker* e_ptr = nullptr; ComplementMarker* e_nullPointer = nullptr; START_SECTION((ComplementMarker())) e_ptr = new ComplementMarker; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~ComplementMarker())) delete e_ptr; END_SECTION e_ptr = new ComplementMarker(); START_SECTION((ComplementMarker(const ComplementMarker& source))) ComplementMarker copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
#include <OpenMS/KERNEL/StandardTypes.h> #include <OpenMS/FORMAT/DTAFile.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(SpectrumCheapDPCorr, "$Id$") ///////////////////////////////////////////////////////////// SpectrumCheapDPCorr* e_ptr = 0; SpectrumCheapDPCorr* e_nullPointer = 0; START_SECTION(SpectrumCheapDPCorr()) e_ptr = new SpectrumCheapDPCorr; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION(~SpectrumCheapDPCorr()) delete e_ptr; END_SECTION e_ptr = new SpectrumCheapDPCorr(); START_SECTION(SpectrumCheapDPCorr(const SpectrumCheapDPCorr& source)) SpectrumCheapDPCorr copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
#include <OpenMS/FORMAT/DTAFile.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(PeakMarker, "$Id$") ///////////////////////////////////////////////////////////// PeakMarker* e_ptr = 0; PeakMarker* e_nullPointer = 0; START_SECTION((PeakMarker())) e_ptr = new PeakMarker; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~PeakMarker())) delete e_ptr; END_SECTION e_ptr = new PeakMarker(); START_SECTION((PeakMarker(const PeakMarker& source))) PeakMarker copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
#include <OpenMS/FORMAT/IdXMLFile.h> #include <OpenMS/FORMAT/FeatureXMLFile.h> /////////////////////////// using namespace OpenMS; using namespace std; START_TEST(PrecursorIonSelection, "$Id$") ///////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////// PrecursorIonSelection* ptr = 0; PrecursorIonSelection* nullPointer = 0; START_SECTION(PrecursorIonSelection()) ptr = new PrecursorIonSelection(); TEST_NOT_EQUAL(ptr, nullPointer) END_SECTION START_SECTION(~PrecursorIonSelection()) delete ptr; END_SECTION ptr = new PrecursorIonSelection(); START_SECTION(PrecursorIonSelection(const PrecursorIonSelection& source)) ptr->setMaxScore(23.5); PrecursorIonSelection copy(*ptr); TEST_EQUAL(copy.getParameters(), ptr->getParameters()) TEST_REAL_SIMILAR(copy.getMaxScore(), ptr->getMaxScore()) END_SECTION
SingleLinkage* ptr = 0; SingleLinkage* nullPointer = 0; START_SECTION(SingleLinkage()) { ptr = new SingleLinkage(); TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(~SingleLinkage()) { delete ptr; } END_SECTION ptr = new SingleLinkage(); START_SECTION((SingleLinkage(const SingleLinkage &source))) { SingleLinkage copy(*ptr); TEST_EQUAL(copy.getProductName(), ptr->getProductName()); } END_SECTION START_SECTION((SingleLinkage& operator=(const SingleLinkage &source))) { SingleLinkage copy; copy = *ptr; TEST_EQUAL(copy.getProductName(), ptr->getProductName()); }
CVMappings* ptr = 0; CVMappings* nullPointer = 0; START_SECTION(CVMappings()) { ptr = new CVMappings(); TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(virtual ~CVMappings()) { delete ptr; } END_SECTION ptr = new CVMappings(); START_SECTION((CVMappings(const CVMappings &rhs))) { CVMappings cvm; CVMappingRule r1, r2; vector<CVMappingRule> rules; rules.push_back(r1); rules.push_back(r2); cvm.setMappingRules(rules); TEST_EQUAL(CVMappings(cvm).getMappingRules() == rules, true) CVReference ref1, ref2; ref1.setIdentifier("Ref1"); ref2.setIdentifier("Ref2");
/////////////////////////// START_TEST(SvmTheoreticalSpectrumGenerator, "$Id$") ///////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////// using namespace OpenMS; using namespace std; SvmTheoreticalSpectrumGenerator* ptr = 0; SvmTheoreticalSpectrumGenerator* nullPointer = 0; START_SECTION(SvmTheoreticalSpectrumGenerator()) ptr = new SvmTheoreticalSpectrumGenerator(); TEST_NOT_EQUAL(ptr, nullPointer) END_SECTION START_SECTION(SvmTheoreticalSpectrumGenerator(const SvmTheoreticalSpectrumGenerator& source)) SvmTheoreticalSpectrumGenerator copy(*ptr); TEST_EQUAL(copy.getParameters(), ptr->getParameters()) END_SECTION START_SECTION(~SvmTheoreticalSpectrumGenerator()) delete ptr; END_SECTION ptr = new SvmTheoreticalSpectrumGenerator(); AASequence peptide = AASequence::fromString("IFSQVGK");
BinnedSharedPeakCount* ptr = 0; BinnedSharedPeakCount* nullPointer = 0; START_SECTION(BinnedSharedPeakCount()) { ptr = new BinnedSharedPeakCount(); TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(~BinnedSharedPeakCount()) { delete ptr; } END_SECTION ptr = new BinnedSharedPeakCount(); START_SECTION((BinnedSharedPeakCount(const BinnedSharedPeakCount &source))) { BinnedSharedPeakCount copy(*ptr); TEST_EQUAL(copy.getName(), ptr->getName()); TEST_EQUAL(copy.getParameters(), ptr->getParameters()); } END_SECTION START_SECTION((BinnedSharedPeakCount& operator=(const BinnedSharedPeakCount &source))) { BinnedSharedPeakCount copy; copy = *ptr; TEST_EQUAL(copy.getName(), ptr->getName()); TEST_EQUAL(copy.getParameters(), ptr->getParameters());
#include <map> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(NeutralLossMarker, "$Id$") ///////////////////////////////////////////////////////////// NeutralLossMarker* e_ptr = 0; NeutralLossMarker* e_nullPointer = 0; START_SECTION((NeutralLossMarker())) e_ptr = new NeutralLossMarker; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~NeutralLossMarker())) delete e_ptr; END_SECTION e_ptr = new NeutralLossMarker(); START_SECTION((NeutralLossMarker(const NeutralLossMarker& source))) NeutralLossMarker copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
/////////////////////////// #include <OpenMS/DATASTRUCTURES/ListUtils.h> using namespace OpenMS; using namespace std; START_TEST(PrecursorIonSelectionPreprocessing, "$Id$") ///////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////// PrecursorIonSelectionPreprocessing* ptr = nullptr; PrecursorIonSelectionPreprocessing* nullPointer = nullptr; START_SECTION(PrecursorIonSelectionPreprocessing()) ptr = new PrecursorIonSelectionPreprocessing(); TEST_NOT_EQUAL(ptr, nullPointer) END_SECTION START_SECTION(~PrecursorIonSelectionPreprocessing()) delete ptr; END_SECTION ptr = new PrecursorIonSelectionPreprocessing(); START_SECTION(PrecursorIonSelectionPreprocessing(const PrecursorIonSelectionPreprocessing &source)) PrecursorIonSelectionPreprocessing copy(*ptr); TEST_EQUAL(copy.getParameters(), ptr->getParameters()) END_SECTION START_SECTION(PrecursorIonSelectionPreprocessing& operator=(const PrecursorIonSelectionPreprocessing &source))
#include <OpenMS/FORMAT/DTAFile.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(IntensityBalanceFilter, "$Id$") ///////////////////////////////////////////////////////////// IntensityBalanceFilter* e_ptr = 0; IntensityBalanceFilter* e_nullPointer = 0; START_SECTION((IntensityBalanceFilter())) e_ptr = new IntensityBalanceFilter; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~IntensityBalanceFilter())) delete e_ptr; END_SECTION e_ptr = new IntensityBalanceFilter(); START_SECTION((IntensityBalanceFilter(const IntensityBalanceFilter& source))) IntensityBalanceFilter copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
///////////////////////////////////////////////////////////// AScore* ptr = 0; AScore* nullPointer = 0; START_SECTION(AScore()) { ptr = new AScore(); TEST_NOT_EQUAL(ptr, nullPointer) } END_SECTION START_SECTION(~AScore()) { delete ptr; } END_SECTION ptr = new AScore(); START_SECTION((PeptideHit compute(PeptideHit& hit, RichPeakSpectrum& real_spectrum, DoubleReal fmt, Int number_of_phospho_sites))) { } END_SECTION START_SECTION((DoubleReal computeCumulativeScore(UInt N,UInt n, DoubleReal p))) { UInt n = 5; UInt N = 1; DoubleReal p = 0.1; DoubleReal score = ptr->computeCumulativeScore(N,n,p); TEST_REAL_SIMILAR(score,-1.0); n = 1;
#include <OpenMS/KERNEL/MSSpectrum.h> #include <OpenMS/KERNEL/MSExperiment.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(TICFilter, "$Id$") ///////////////////////////////////////////////////////////// TICFilter* e_ptr = nullptr; TICFilter* e_nullPointer = nullptr; START_SECTION((TICFilter())) e_ptr = new TICFilter; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~TICFilter())) delete e_ptr; END_SECTION e_ptr = new TICFilter(); START_SECTION((TICFilter(const TICFilter& source))) TICFilter copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()); TEST_EQUAL(copy.getName(), e_ptr->getName()); END_SECTION
#include <OpenMS/KERNEL/StandardTypes.h> #include <OpenMS/FORMAT/DTAFile.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(ThresholdMower, "$Id$") ///////////////////////////////////////////////////////////// ThresholdMower* e_ptr = 0; ThresholdMower* e_nullPointer = 0; START_SECTION((ThresholdMower())) e_ptr = new ThresholdMower; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~ThresholdMower())) delete e_ptr; END_SECTION e_ptr = new ThresholdMower(); START_SECTION((ThresholdMower(const ThresholdMower& source))) ThresholdMower copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
#include <OpenMS/KERNEL/MSExperiment.h> #include <OpenMS/FORMAT/DTAFile.h> using namespace OpenMS; using namespace std; START_TEST(ComplementFilter, "$Id$") ///////////////////////////////////////////////////////////// ComplementFilter* e_ptr = 0; ComplementFilter* e_nullPointer = 0; START_SECTION((ComplementFilter())) e_ptr = new ComplementFilter; TEST_NOT_EQUAL(e_ptr, e_nullPointer) END_SECTION START_SECTION((~ComplementFilter())) delete e_ptr; END_SECTION e_ptr = new ComplementFilter(); START_SECTION((ComplementFilter(const ComplementFilter& source))) ComplementFilter copy(*e_ptr); TEST_EQUAL(copy.getParameters(), e_ptr->getParameters()) TEST_EQUAL(copy.getName(), e_ptr->getName()) END_SECTION
#include <OpenMS/CHEMISTRY/Residue.h> using namespace OpenMS; using namespace std; /////////////////////////// START_TEST(Residue, "$Id$") ///////////////////////////////////////////////////////////// // Modification tests ResidueModification* ptr = 0; ResidueModification* nullPointer = 0; START_SECTION(ResidueModification()) ptr = new ResidueModification(); TEST_NOT_EQUAL(ptr, nullPointer) END_SECTION START_SECTION(~ResidueModification()) delete ptr; END_SECTION ptr = new ResidueModification(); START_SECTION(ResidueModification(const ResidueModification& modification)) ResidueModification m(*ptr); TEST_EQUAL(m == *ptr, true) END_SECTION START_SECTION(ResidueModification& operator = (const ResidueModification& modification))
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/SUPERHIRN/BackgroundControl.h> /////////////////////////// START_TEST(BackgroundControl, "$Id$") ///////////////////////////////////////////////////////////// ///////////////////////////////////////////////////////////// using namespace OpenMS; using namespace std; BackgroundControl* ptr = 0; BackgroundControl* nullPtr = 0; START_SECTION((BackgroundControl())) ptr = new BackgroundControl(); TEST_NOT_EQUAL(ptr,nullPtr) END_SECTION START_SECTION((~BackgroundControl())) delete ptr; END_SECTION ptr = new BackgroundControl(); /* START_SECTION((init())) ms_peak *p = new ms_peak(); std::vector<ms_peak> * peakvec = new std::vector<ms_peak>(); peakvec->push_back(p); ptr->addPeakMSScan(1.0, peakvec);