void serialize(IArchive& ar, IndividualHumanMalaria::gametocytes_strain_map_t& mapping)
{
size_t count = ar.IsWriter() ? mapping.size() : -1;
ar.startArray(count);
if (ar.IsWriter())
{
for (auto& entry : mapping)
{
StrainIdentity* strain = const_cast<StrainIdentity*>(&entry.first);
ar.startObject();
ar.labelElement("key"); serialize(ar, strain);
ar.labelElement("value") & entry.second;
ar.endObject();
}
}
else
{
for (size_t i = 0; i < count; i++)
{
StrainIdentity* strain;
int64_t value;
ar.startObject();
ar.labelElement("key"); serialize(ar, strain);
ar.labelElement("value") & value;
ar.endObject();
mapping[*strain] = value;
}
}
ar.endArray();
}
void ISerializable::serialize(IArchive& ar, ISerializable*& obj)
{
static std::string nullptr_string( "nullptr" );
if ( ar.IsWriter() && ( obj == nullptr ) )
{
ar.startClass( nullptr_string );
ar.endClass();
return;
}
std::string class_name = ar.IsWriter() ? obj->GetClassName() : "__UNK__";
ar.startClass(class_name);
if ( ar.IsReader() && (class_name == nullptr_string) )
{
ar.endClass();
obj = nullptr;
return;
}
auto serialize_function = SerializationRegistrar::_get_serializer(class_name);
if (!ar.IsWriter())
{
auto constructor_function = SerializationRegistrar::_get_constructor(class_name);
if( constructor_function == nullptr )
{
std::stringstream msg;
msg << "Could not find constructor for class_name='" << class_name << "'";
throw SerializationException( __FILE__, __LINE__, __FUNCTION__, msg.str().c_str() );
}
obj = constructor_function();
}
serialize_function(ar, obj);
ar.endClass();
}
void VectorProbabilities::serialize(IArchive& ar, VectorProbabilities*& probabilities)
{
probabilities = ar.IsWriter() ? probabilities : new VectorProbabilities();
ar.startObject();
ar.labelElement("effective_host_population") & probabilities->effective_host_population;
ar.labelElement("outdoorareakilling") & probabilities->outdoorareakilling;
ar.labelElement("outdoorareakilling_male") & probabilities->outdoorareakilling_male;
ar.labelElement("diebeforeattempttohumanfeed") & probabilities->diebeforeattempttohumanfeed;
ar.labelElement("diewithoutattemptingfeed") & probabilities->diewithoutattemptingfeed;
ar.labelElement("survivewithoutsuccessfulfeed") & probabilities->survivewithoutsuccessfulfeed;
ar.labelElement("successfulfeed_animal") & probabilities->successfulfeed_animal;
ar.labelElement("successfulfeed_AD") & probabilities->successfulfeed_AD;
ar.labelElement("indoorattempttohumanfeed") & probabilities->indoorattempttohumanfeed;
ar.labelElement("outdoorattempttohumanfeed") & probabilities->outdoorattempttohumanfeed;
ar.labelElement("ADbiocontrol_additional_mortality") & probabilities->ADbiocontrol_additional_mortality;
ar.labelElement("outdoor_returningmortality") & probabilities->outdoor_returningmortality;
ar.labelElement("indoor_diebeforefeeding") & probabilities->indoor_diebeforefeeding;
ar.labelElement("indoor_hostnotavailable") & probabilities->indoor_hostnotavailable;
ar.labelElement("indoor_dieduringfeeding") & probabilities->indoor_dieduringfeeding;
ar.labelElement("indoor_diepostfeeding") & probabilities->indoor_diepostfeeding;
ar.labelElement("indoor_successfulfeed_human") & probabilities->indoor_successfulfeed_human;
ar.labelElement("indoor_successfulfeed_AD") & probabilities->indoor_successfulfeed_AD;
ar.labelElement("outdoor_diebeforefeeding") & probabilities->outdoor_diebeforefeeding;
ar.labelElement("outdoor_hostnotavailable") & probabilities->outdoor_hostnotavailable;
ar.labelElement("outdoor_dieduringfeeding") & probabilities->outdoor_dieduringfeeding;
ar.labelElement("outdoor_diepostfeeding") & probabilities->outdoor_diepostfeeding;
ar.labelElement("outdoor_successfulfeed_human") & probabilities->outdoor_successfulfeed_human;
ar.labelElement("sugarTrapKilling") & probabilities->sugarTrapKilling;
ar.labelElement("individualRepellentBlock") & probabilities->individualRepellentBlock;
ar.labelElement("attraction_ADOV") & probabilities->attraction_ADOV;
ar.labelElement("attraction_ADIV") & probabilities->attraction_ADIV;
ar.labelElement("kill_livestockfeed") & probabilities->kill_livestockfeed;
ar.labelElement("kill_PFV") & probabilities->kill_PFV;
ar.labelElement("spatial_repellent") & probabilities->spatial_repellent;
ar.labelElement("nooutdoorhumanfound") & probabilities->nooutdoorhumanfound;
ar.labelElement("outdoorRestKilling") & probabilities->outdoorRestKilling;
ar.endObject();
}
void PropertyValueChanger::serialize(IArchive& ar, PropertyValueChanger* obj)
{
BaseIntervention::serialize( ar, obj );
PropertyValueChanger& changer = *obj;
ar.labelElement("target_property_key" ) & changer.target_property_key;
ar.labelElement("target_property_value") & changer.target_property_value;
ar.labelElement("probability" ) & changer.probability;
ar.labelElement("revert" ) & changer.revert;
ar.labelElement("max_duration" ) & changer.max_duration;
ar.labelElement("action_timer" ) & changer.action_timer;
ar.labelElement("reversion_timer" ) & changer.reversion_timer;
if( !ar.IsWriter() )
{
changer.target_property_key.constraints = "<demographics>::Defaults.Individual_Properties.*.Property.<keys>";
changer.target_property_value.constraints = "<demographics>::Defaults.Individual_Properties.*.Value.<keys>";
//TODO - Need to actual use the constrained string
}
}
void PropertyValueChanger::serialize(IArchive& ar, PropertyValueChanger* obj)
{
BaseIntervention::serialize( ar, obj );
PropertyValueChanger& changer = *obj;
ar.labelElement("target_property_key" ) & changer.target_property_key;
ar.labelElement("target_property_value") & changer.target_property_value;
ar.labelElement("probability" ) & changer.probability;
ar.labelElement("revert" ) & changer.revert;
ar.labelElement("max_duration" ) & changer.max_duration;
ar.labelElement("action_timer" ) & changer.action_timer;
ar.labelElement("reversion_timer" ) & changer.reversion_timer;
if( !ar.IsWriter() )
{
changer.target_property_key.constraints = IPKey::GetConstrainedStringConstraintKey();
changer.target_property_value.constraints = IPKey::GetConstrainedStringConstraintValue();
//TODO - Need to actual use the constrained string
}
}