{
IndexedMzMLFile file(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"));
TEST_EQUAL(file.getNrChromatograms(), 1)
}
END_SECTION
START_SECTION(( OpenMS::Interfaces::SpectrumPtr getSpectrumById(int id) ))
{
IndexedMzMLFile file(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"));
MSExperiment<> exp;
MzMLFile().load(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"),exp);
TEST_EQUAL(file.getNrSpectra(), exp.getSpectra().size())
OpenMS::Interfaces::SpectrumPtr spec = file.getSpectrumById(0);
TEST_EQUAL(spec->getMZArray()->data.size(), exp.getSpectra()[0].size() )
TEST_EQUAL(spec->getIntensityArray()->data.size(), exp.getSpectra()[0].size() )
// Test Exceptions
TEST_EXCEPTION(Exception::IllegalArgument,file.getSpectrumById(-1));
TEST_EXCEPTION(Exception::IllegalArgument,file.getSpectrumById( file.getNrSpectra()+1));
{
IndexedMzMLFile file(OPENMS_GET_TEST_DATA_PATH("fileDoesNotExist"));
TEST_EQUAL(file.getParsingSuccess(), false)
TEST_EXCEPTION(Exception::ParseError,file.getSpectrumById( 0 ));
}
}
END_SECTION
{
IndexedMzMLFile file(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"));
TEST_EQUAL(file.getNrChromatograms(), 1)
}
END_SECTION
START_SECTION(( OpenMS::Interfaces::SpectrumPtr getSpectrumById(int id) ))
{
IndexedMzMLFile file(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"));
MSExperiment<> exp;
MzMLFile().load(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"),exp);
TEST_EQUAL(file.getNrSpectra(), exp.getSpectra().size())
OpenMS::Interfaces::SpectrumPtr spec = file.getSpectrumById(0);
TEST_EQUAL(spec->getMZArray()->data.size(), exp.getSpectra()[0].size() )
TEST_EQUAL(spec->getIntensityArray()->data.size(), exp.getSpectra()[0].size() )
}
END_SECTION
START_SECTION(( OpenMS::Interfaces::ChromatogramPtr getChromatogramById(int id) ))
{
IndexedMzMLFile file(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"));
MSExperiment<> exp;
MzMLFile().load(OPENMS_GET_TEST_DATA_PATH("IndexedmzMLFile_1.mzML"),exp);
TEST_EQUAL(file.getNrChromatograms(), exp.getChromatograms().size())
OpenMS::Interfaces::ChromatogramPtr chrom = file.getChromatogramById(0);