Beispiel #1
0
 Network *duplicate()
     {
         Network *network = new Network(mVertices.size());
         int i;
         Edge *edge;
         for (i=0;i<mEdges.size();i++)
         {
             edge = mEdges[i];
             cout << edge->start()->index() << " " << edge->end()->index() << endl;
             network->addEdge(edge->start()->index(),edge->end()->index());
         }
         return network;
     }
// Only for named networks
void flatten(MultipleNetwork& mnet, MNET_FLATTENING_ALGORITHM algorithm,
		Network& net) {

	std::set<global_vertex_id> vertexes;
	mnet.getVertexes(vertexes);
	std::set<global_vertex_id>::const_iterator v_it;
	for (v_it = vertexes.begin(); v_it != vertexes.end(); ++v_it) {
		net.addVertex(mnet.getVertexName(*v_it));
	}

	std::set<global_edge_id> edges;
	mnet.getEdges(edges);
	std::set<global_edge_id>::const_iterator e_it;
	for (e_it = edges.begin(); e_it != edges.end(); ++e_it) {
		if (! net.containsEdge(mnet.getVertexName((*e_it).v1),mnet.getVertexName((*e_it).v2)))
			net.addEdge(mnet.getVertexName((*e_it).v1),mnet.getVertexName((*e_it).v2));
	}
}
Beispiel #3
0
void route_edges(Layouter &state,plugin& pg, double scale, int iter, double temp, int debug){
   int n=state.nw.nodes.size();
   int i,j,k;
   vector<NodeLinePair> gs;
   Rect bb=state.nw.getBB();
   bb.extend(state.avgsize/10);
   Network nv;
   vector<VI> nodemap(n);
   vector<vector<VI> > edge_crossings(n+4,vector<VI>(n+4)); // this stores for each voronoi line between node i and j the crosspoints; includes 4 virtual nodes
   printf("finding Voronoi separator lines\n");
   for (i=0;i<n;i++){
      gs.clear();
      double x=state.nw.nodes[i].x;
      double y=state.nw.nodes[i].y;
      double w=state.nw.nodes[i].width;
      double h=state.nw.nodes[i].height;
      Rect ri=state.nw.nodes[i].rect();
      //if (i==iter) debugrect(ri,0,0,255);
      gs.push_back(NodeLinePair(n,ParamEdge(Point(x,bb.ymin),bb.TL()))); // boundary lines (should point to left); adds virtual nodes n ... n+3
      gs.push_back(NodeLinePair(n+1,ParamEdge(Point(bb.xmin,y),bb.BL())));
      gs.push_back(NodeLinePair(n+2,ParamEdge(Point(x,bb.ymax),bb.BR())));
      gs.push_back(NodeLinePair(n+3,ParamEdge(Point(bb.xmax,y),bb.TR())));
      double dclosest=DBL_MAX;
      int iclosest;
      for (j=0;j<n;j++){
         if (i==j) continue;
         double x2=state.nw.nodes[j].x;
         double y2=state.nw.nodes[j].y;
         double w2=state.nw.nodes[j].width;
         double h2=state.nw.nodes[j].height;
         double dx=x2-x;
         double dy=y2-y;
         double mx=(dx>0 ? (x+w/2+x2-w2/2)/2  : (x-w/2+x2+w2/2)/2); // point thru which separation line should go (in the middle between the two nodes)
         double my=(dy>0 ? (y+h/2+y2-h2/2)/2  : (y-h/2+y2+h2/2)/2);
         if (my<min(y,y2)) my=min(y,y2); // if nodes "overlap" in one direction, these limits need to be applied
         if (mx<min(x,x2)) mx=min(x,x2);
         if (my>max(y,y2)) my=max(y,y2);
         if (mx>max(x,x2)) mx=max(x,x2);
         Point m(mx,my);
         double gx=dy; // line sould point perpendicular to distance vector; points to left
         double gy=-dx;
         //if (i==iter) debugline(m.x,m.y,m.x+gx,m.y+gy,200,100,100,true);
//         if (i==iter) debugline(x,y,x2,y2,100,100,200,true);
         
         double ord_angles[4]; 
         double &alpha=ord_angles[0];
         alpha=angle(Point(gx,gy));
         // find suitable 0, 45 and 90° lines and sort them by proximity to (gx,gy) line
         double &nearest=ord_angles[1]; // just references to iterate through candidates later on
         double &second=ord_angles[2];
         double &third=ord_angles[3];
         nearest=PI/4*round(4*alpha/PI);
         double left=PI/2*floor(2*alpha/PI);
         double right=PI/2*ceil(2*alpha/PI);

         // find second nearest
         second=PI/4*floor(4*alpha/PI);
         if (second==nearest) second=PI/4*ceil(4*alpha/PI);
         
         // find third nearest
         if (nearest==left){
            third=right;
         } else if (nearest==right){
            third=left;
         } else if (second==left){
            third=right;
         } else {
            third=left;
         }
         
/*         for (k=0;k<3;k++){
            if (i==1) debugline(m.x,m.y,m.x+100*Point(ord_angles[k]).x,m.y+100*Point(ord_angles[k]).y,100,100,200,true);
         }*/
         // check candidates in the defined order whether they collide with one of the two nodes (i or j)
         Rect rj=state.nw.nodes[j].rect();
         Point g(0,0);
         bool found=false;
         for (k=0;k<4;k++){
            g=Point(ord_angles[k]);
            if (prod(g,rj.TL()-m)>0 && prod(g,rj.TR()-m)>0 && prod(g,rj.BR()-m)>0 && prod(g,rj.BL()-m)>0 &&
               prod(g,ri.TL()-m)<0 && prod(g,ri.TR()-m)<0 && prod(g,ri.BR()-m)<0 && prod(g,ri.BL()-m)<0) { // node j completely right of g && i completely left
                found=true;
                break;
            }
         }
         if (!found) g=Point(ord_angles[0]); // ups? do nodes overlap?
            
         // generate the line and save it 
         ParamEdge ge(m,m+g); // the voronoi line separating node i from node j
         Point pclosest=ge.dist_vec(state.nw.nodes[i]); // closest point on line to node i
         ge.re_ref(state.nw.nodes[i]+pclosest); // reference point of line needs to be the closest point to node i
         gs.push_back(NodeLinePair(j,ge));
         if (norm(pclosest)<dclosest){ // find closest line to node i on the fly
            dclosest=norm(pclosest);
            iclosest=gs.size()-1;
         }
         //if (i==iter) debugline(ge.from(),ge.p(state.avgsize*4),100,100,100,true);
      }
      
      //find  set of voronoi lines which minimally surround node i
      int curidx=iclosest;
      int minidx;
      int lastidx=-1;
      bool first=true;
      int gl=gs.size();
      VI used(gl,0);
      while (first || curidx!=iclosest){
         ParamEdge &cur=gs[curidx].line;
         double minc=DBL_MAX;
         for (j=0;j<gl;j++){ // find the nearest crosspoint of one of all voronoi lines; searching to the left from last cross point
            if (j==curidx) continue;
            if (used[j]) continue;
            if (j==lastidx) continue; // finds the last voronoi line again; should not happen as this line should be in used[] already; except for iclosest
            double c=cur.cross_param(gs[j].line);
            if (c==0) { // special case, check whether new line points inwards
               Point ctr90=to_left(Point(x,y)-cur.p(c),PI);
               Point cln90=to_left(cur.unit(),PI);
               Point dirj=gs[j].line.unit();
               if (!((scalar(ctr90,dirj)<0) && (scalar(cln90,dirj)>0))){ // new line not between center line and current line
                  continue;
               }
            }
            if (c>=0 && c<minc){
               minc=c;
               minidx=j;
               //if (i==iter) debugpoint(cur.p(c),state.avgsize/10,0,0,255);
            }
         }
         used[minidx]=1;
         Point cp=cur.cross_point(gs[minidx].line);
         //if (i==iter) debugpoint(cp,state.avgsize/10,0,255,0);
         gs[minidx].line.re_ref(cp); // setting ref point of next line to the current cross point
         //if (i==iter) debugline(gs[minidx].line.from(),gs[minidx].line.p(state.avgsize),255,0,255);
         int newnode=nv.nodes.size(); 
         nv.addNode(newnode,other,"",1,1,cp.x,cp.y,0);
         edge_crossings[min(i,gs[curidx].node)][max(i,gs[curidx].node)].push_back(newnode); // add the new node to the two veronoi lines it belongs to
         edge_crossings[min(i,gs[minidx].node)][max(i,gs[minidx].node)].push_back(newnode);
         //nodemap[i].push_back(newnode);
         lastidx=curidx;
         curidx=minidx;
         first=false;
         //if (i==iter) debugline(cur.from(),cp,0,0,0);
      }
   }
   printf("finding relevant cross points on seperator lines and building network\n");
   
   // go through all voronoi lines and connect all registered cross points
   CmpCrossPoints ccp(nv);
   for (i=0;i<n+4;i++){ // includes 4 virtual nodes
      for (j=i+1;j<n+4;j++){
         if (edge_crossings[i][j].size() ==0 ) continue;
         sort(edge_crossings[i][j].begin(),edge_crossings[i][j].end(),ccp); // sort cross points on line
         for (k=0;k<(int)edge_crossings[i][j].size();k++){
            int n1=edge_crossings[i][j][k];
            if (i<n) nodemap[i].push_back(n1); // register voronoi node to be adjacent to original node i (if not virtual node)
            if (j<n) nodemap[j].push_back(n1);
            if (k==((int)edge_crossings[i][j].size())-1) break; // for the last crosspoint we do not create an edge
            int n2=edge_crossings[i][j][k+1];
            nv.addEdge(n1,n2,undirected);
            if (iter<=1) debugline(nv.nodes[n1].x,nv.nodes[n1].y,nv.nodes[n2].x,nv.nodes[n2].y,0,0,0,true);
         }
      }
   }
   printf("finding shortest path through network for each original edge\n");
   if (iter>=1){ // this is just for showing 1 step show only veronoi lines, 2nd show splines
      nv.calcEdgeLengths();
      int m=state.nw.edges.size();
      for (i=0;i<m;i++){
         printf(".");fflush(stdout);
         Edge &e=state.nw.edges[i];
         int n1=e.from;
         int n2=e.to;
         BFS bfs(nv,nodemap[n1]);
         int nn=bfs.next();
         while (nn>=0 && find(nodemap[n2].begin(),nodemap[n2].end(),nn)==nodemap[n2].end()){
            nn=bfs.next();
         }
         if (nn<0) printf("Ups, no route for edge\n");
         VI path=bfs.path();
         smooth_path(nv,path,state.avgsize/4);
         e.splinepoints.clear();
         e.splinehandles.clear();
         double beta;
         Point vec;
         double dd1=(path.size()>1 ? 
            (norm(nv.nodes[path[0]]-state.nw.nodes[n1])-max(state.nw.nodes[n1].width,state.nw.nodes[n1].height)/2)/2 :
            (norm(state.nw.nodes[n2]-state.nw.nodes[n1])-max(state.nw.nodes[n1].width,state.nw.nodes[n1].height)/2-max(state.nw.nodes[n2].width,state.nw.nodes[n2].height)/2)/2);
         dd1=min(dd1,state.avgsize/2);
         double d1=max(state.nw.nodes[n1].width,state.nw.nodes[n1].height)/2+dd1;
         double dd2=(path.size()>1 ? 
         (norm(nv.nodes[path.back()]-state.nw.nodes[n2])-max(state.nw.nodes[n2].width,state.nw.nodes[n2].height)/2)/2 :
         (norm(state.nw.nodes[n2]-state.nw.nodes[n1])-max(state.nw.nodes[n1].width,state.nw.nodes[n1].height)/2-max(state.nw.nodes[n2].width,state.nw.nodes[n2].height)/2)/2);
         dd2=min(dd2,state.avgsize/2);
         double d2=max(state.nw.nodes[n2].width,state.nw.nodes[n2].height)/2+state.avgsize/2;
         Point sp1,sp2;
         switch(e.type){
            case substrate:
               reverse(path.begin(),path.end());
               swap(n1,n2);
               swap(d1,d2);
               sp1=(path.size()>1 ? nv.nodes[path[0]] : state.nw.nodes[n2]);
               e.splinehandles.push_back(unit(sp1-state.nw.nodes[n1])*d1);
               e.splinehandles.push_back(Point(state.nw.nodes[n2].dir+PI/2)*d2);
               break;
            case product:
               e.splinehandles.push_back(Point(state.nw.nodes[n1].dir-PI/2)*d1);
               sp2=(path.size()>1 ? nv.nodes[path.back()] : state.nw.nodes[n1]);
               e.splinehandles.push_back(unit(sp2-state.nw.nodes[n2])*d2);
               break;
            case activator:
            case inhibitor:
            case catalyst:
               reverse(path.begin(),path.end());
               swap(n1,n2);
               swap(d1,d2);
               vec=state.nw.nodes[n1]-state.nw.nodes[n2]; // vector pointing from n2 (reaction) to n1 (catalyst,etc)
               beta=0;
               if (scalar(vec,Point(state.nw.nodes[n2].dir+PI))>scalar(vec,Point(state.nw.nodes[n2].dir))) beta=PI;
               sp1=(path.size()>1 ? nv.nodes[path[0]] : state.nw.nodes[n2]);
               e.splinehandles.push_back(unit(sp1-state.nw.nodes[n1])*d1);
               e.splinehandles.push_back(Point(state.nw.nodes[n2].dir+beta)*d2);
               break;
            default:
               sp1=(path.size()>1 ? nv.nodes[path[0]] : state.nw.nodes[n2]);
               e.splinehandles.push_back(unit(sp1-state.nw.nodes[n1])*d1);
               sp2=(path.size()>1 ? nv.nodes[path.back()] : state.nw.nodes[n1]);
               e.splinehandles.push_back(unit(sp2-state.nw.nodes[n2])*d2);
         }
         if (path.size()>1){
            //debugline(state.nw.nodes[n1].x,state.nw.nodes[n1].y,nv.nodes[path.front()].x,nv.nodes[path.front()].y,255,100,100);
            for (j=0;j<(int)path.size();j++){
               Point before=(j==0 ? state.nw.nodes[n1] : nv.nodes[path[j-1]]);
               Point &after=(j==((int)path.size())-1 ? state.nw.nodes[n2] : nv.nodes[path[j+1]]);
               Point &cur=nv.nodes[path[j]];
               if (after==cur) continue;
               if (before==cur) {
                  if (j-1<0) continue;
                  before=(j-1==0 ? state.nw.nodes[n1] : nv.nodes[path[j-2]]);
               }
               Point d=unit(before-cur)+unit(after-cur);
               if (d.is_null()) continue;
               d=unit(d)*min(min(norm(before-cur),norm(after-cur))/2,state.avgsize/2);
               e.splinehandles.insert(--e.splinehandles.end(),to_left(d,PI/2)*sign(scalar(to_left(d,PI/2),before-cur)));
               e.splinepoints.push_back(cur+d);
               //debugline(cur+d,cur+d+to_left(d,PI/2)*sign(scalar(to_left(d,PI/2),before-cur)),0,0,255,true);
               //if (j<path.size()-1) debugline(nv.nodes[path[j]].x,nv.nodes[path[j]].y,nv.nodes[path[j+1]].x,nv.nodes[path[j+1]].y,255,100,100);
            }
            //debugline(nv.nodes[path.back()].x,nv.nodes[path.back()].y,state.nw.nodes[n2].x,state.nw.nodes[n2].y,255,100,100);
            
         }
      }
   }
   /*   NetDisplay nd(nv);
   nd.waitKeyPress=true;
   nd.show();*/
}