RemoveAllReactionRowsCommand::RemoveAllReactionRowsCommand(CQReactionDM * pReaDM, const QModelIndex&)
{
mpReactionDM = pReaDM;
assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
assert(pDataModel != NULL);
CModel * pModel = pDataModel->getModel();
assert(pModel != NULL);
for (int i = 0; i != pReaDM->rowCount() - 1; ++i)
{
UndoReactionData *data = new UndoReactionData();
CReactionInterface* ri = new CReactionInterface((*CCopasiRootContainer::getDatamodelList())[0]->getModel());
if (pModel->getReactions()[i])
{
data->setName(pModel->getReactions()[i]->getObjectName());
ri->initFromReaction(pModel->getReactions()[i]->getKey());
data->setRi(ri);
mpReaData.append(data);
}
}
mType = REACTIONREMOVEALL;
setEntityType("Reaction");
this->setText(removeAllReactionRowsText());
}
void UndoDependentData::fillDependentObjects(CModel *pModel, QList<UndoReactionData *> *reactionData)
{
if (pModel == NULL || reactionData == NULL || reactionData->empty())
return;
QList <UndoReactionData *>::const_iterator j;
for (j = reactionData->begin(); j != reactionData->end(); ++j)
{
UndoReactionData * rData = *j;
//need to make sure reaction doesn't exist in the model already
if (pModel->getReactions().getIndex(rData->getName()) != C_INVALID_INDEX)
continue;
rData->fillObject(pModel);
}
}
void UndoDependentData::restoreDependentObjects(CModel *pModel, QList<UndoReactionData *> *reactionData)
{
if (pModel == NULL || reactionData == NULL || reactionData->empty())
return;
QList <UndoReactionData *>::const_iterator j;
for (j = reactionData->begin(); j != reactionData->end(); ++j)
{
UndoReactionData * rData = *j;
//need to make sure reaction doesn't exist in the model already
if (pModel->getReactions().getIndex(rData->getName()) != C_INVALID_INDEX)
continue;
CReaction *pRea = rData->restoreObjectIn(pModel);
rData->restoreDependentObjects(pModel);
updateGUI(ListViews::REACTION, ListViews::ADD, pRea->getKey());
}
}
void CQCompartment::addCompartment(UndoCompartmentData *pSData)
{
assert(CCopasiRootContainer::getDatamodelList()->size() > 0);
CCopasiDataModel* pDataModel = (*CCopasiRootContainer::getDatamodelList())[0];
assert(pDataModel != NULL);
CModel * pModel = pDataModel->getModel();
assert(pModel != NULL);
//reinsert all the Compartments
CCompartment *pCompartment = pModel->createCompartment(pSData->getName());
pCompartment->setInitialValue(pSData->getInitialValue());
pCompartment->setStatus(pSData->getStatus());
std::string key = pCompartment->getKey();
protectedNotify(ListViews::COMPARTMENT, ListViews::ADD, key);
//restore all the dependencies
//reinsert all the species
QList <UndoSpecieData *> *pSpecieData = pSData->getSpecieDependencyObjects();
QList <UndoSpecieData *>::const_iterator i;
for (i = pSpecieData->begin(); i != pSpecieData->end(); ++i)
{
UndoSpecieData * data = *i;
// beginInsertRows(QModelIndex(), 1, 1);
CMetab *pSpecie = pModel->createMetabolite(data->getName(), data->getCompartment(), data->getIConc(), data->getStatus());
protectedNotify(ListViews::METABOLITE, ListViews::ADD, pSpecie->getKey());
//endInsertRows();
}
//reinsert the dependency reaction
QList <UndoReactionData *> *pReactionData = pSData->getReactionDependencyObjects();
QList <UndoReactionData *>::const_iterator j;
for (j = pReactionData->begin(); j != pReactionData->end(); ++j)
{
//UndoReactionData * rData = dynamic_cast<UndoReactionData*>(*j);
UndoReactionData * rData = *j;
//TODO check if reaction already exist in the model, better idea may be implemented in the future
bool exist = false;
for (int ii = 0; ii < (int)pModel->getReactions().size(); ++ii)
{
if (pModel->getReactions()[ii]->getObjectName() == rData->getName())
{
exist = true;
ii = ii + pModel->getReactions().size() + 1; //jump out of the loop reaction exist already
}
else
{
exist = false;
}
}
if (!exist)
{
protectedNotify(ListViews::METABOLITE, ListViews::ADD, ""); //Refresh all dependency species.
CReaction *pRea = pModel->createReaction(rData->getName());
rData->getRi()->writeBackToReaction(pRea);
protectedNotify(ListViews::REACTION, ListViews::ADD, pRea->getKey());
}
}
mpListView->switchToOtherWidget(C_INVALID_INDEX, key);
}