int main(int argc, char const ** argv)
{
ArgumentParser parser("arg_parse_demo");
setShortDescription(parser, "Just a demo of the new seqan::ArgumentParser!");
setVersion(parser, "0.1");
setDate(parser, "Mar 2012");
addUsageLine(parser, "[\\fIOPTIONS\\fP] \\fIIN\\fP \\fIOUT\\fP ");
addDescription(parser, "This is just a little demo to show what seqan::ArgumentParser is able to do.");
addDescription(parser, "\\fIIN\\fP is a multi-FASTA input.");
addDescription(parser, "\\fIOUT\\fP is a txt output.");
addArgument(parser, ArgParseArgument(ArgParseArgument::INPUTFILE, "IN"));
addArgument(parser, ArgParseArgument(ArgParseArgument::OUTPUTFILE, "OUT"));
// allow only fasta files as input
setValidValues(parser, 0, "FASTA fa");
setValidValues(parser, 1, "txt");
addSection(parser, "Important Tool Parameters");
addOption(parser, ArgParseOption("", "id", "Sequence identity between [0.0:1.0]", ArgParseArgument::DOUBLE, "ID"));
setRequired(parser, "id", true);
setMinValue(parser, "id", "0.0");
setMaxValue(parser, "id", "1.0");
addSection(parser, "Miscellaneous");
addOption(parser, ArgParseOption("v", "verbose", "Turn on verbose output."));
addOption(parser, ArgParseOption("H", "hidden", "Super mysterious flag that will not be shown in the help screen or man-page."));
hideOption(parser, "H");
addTextSection(parser, "References");
addText(parser, "http://www.seqan.de");
ArgumentParser::ParseResult res = parse(parser, argc, argv);
if (res == ArgumentParser::PARSE_OK)
{
bool verbose = false;
getOptionValue(verbose, parser, "verbose");
std::cout << "Verbose: " << (verbose ? "on" : "off") << std::endl;
double identity = -1.0;
getOptionValue(identity, parser, "id");
std::cout << "Identity: " << identity << std::endl;
CharString inputFile, outputFile;
getArgumentValue(inputFile, parser, 0);
getArgumentValue(outputFile, parser, 1);
std::cout << "Input-File: " << inputFile << std::endl;
std::cout << "Output-File: " << outputFile << std::endl;
return 0;
}
else
{
return res == ArgumentParser::PARSE_ERROR; // 1 on errors, 0 otherwise
}
}
int main(int argc, char const ** argv)
{
// Initialize ArgumentParser.
ArgumentParser parser("arg_parse_demo");
setCategory(parser, "Demo");
setShortDescription(parser, "Just a demo of the new seqan::ArgumentParser!");
setVersion(parser, "0.1");
setDate(parser, "Mar 2012");
// Add use and description lines.
addUsageLine(parser, "[\\fIOPTIONS\\fP] \\fIIN\\fP \\fIOUT\\fP ");
addDescription(
parser,
"This is just a little demo to show what seqan::ArgumentParser is "
"able to do. \\fIIN\\fP is a multi-FASTA input file. \\fIOUT\\fP is a "
"txt output file.");
// Add positional arguments and set their valid file types.
addArgument(parser, ArgParseArgument(ArgParseArgument::INPUTFILE, "IN"));
addArgument(parser, ArgParseArgument(ArgParseArgument::OUTPUTFILE, "OUT"));
setValidValues(parser, 0, "FASTA fa");
setValidValues(parser, 1, "txt");
// Add a section with some options.
addSection(parser, "Important Tool Parameters");
addOption(parser, ArgParseOption("", "id", "Sequence identity between [0.0:1.0]",
ArgParseArgument::DOUBLE, "ID"));
setRequired(parser, "id", true);
setMinValue(parser, "id", "0.0");
setMaxValue(parser, "id", "1.0");
// Adding a verbose and a hidden option.
addSection(parser, "Miscellaneous");
addOption(parser, ArgParseOption("v", "verbose", "Turn on verbose output."));
addOption(parser, ArgParseOption("H", "hidden", "Super mysterious flag that will not be shown in "
"the help screen or man page."));
hideOption(parser, "H");
// Add a Reference section.
addTextSection(parser, "References");
addText(parser, "http://www.seqan.de");
// Parse the arguments.
ArgumentParser::ParseResult res = parse(parser, argc, argv);
// Return if there was an error or a built-in command was triggered (e.g. help).
if (res != ArgumentParser::PARSE_OK)
return res == ArgumentParser::PARSE_ERROR; // 1 on errors, 0 otherwise
// Extract and print the options.
bool verbose = false;
getOptionValue(verbose, parser, "verbose");
std::cout << "Verbose: " << (verbose ? "on" : "off") << std::endl;
double identity = -1.0;
getOptionValue(identity, parser, "id");
std::cout << "Identity: " << identity << std::endl;
CharString inputFile, outputFile;
getArgumentValue(inputFile, parser, 0);
getArgumentValue(outputFile, parser, 1);
std::cout << "Input-File: " << inputFile << std::endl;
std::cout << "Output-File: " << outputFile << std::endl;
return 0;
}