/*
int RapidXMLInterface::rapidReadFile(const std::string &fileName)
{
GEOLIB::GEOObjects* geoObjects = _project->getGEOObjects();
std::ifstream in(fileName.c_str());
if (in.fail())
{
std::cout << "XmlStnInterface::rapidReadFile() - Can't open xml-file." << std::endl;
return 0;
}
// buffer file
in.seekg(0, std::ios::end);
size_t length = in.tellg();
in.seekg(0, std::ios::beg);
char* buffer = new char[length+1];
in.read(buffer, length);
buffer[in.gcount()] = '\0';
in.close();
// build DOM tree
rapidxml::xml_document<> doc;
doc.parse<0>(buffer);
// parse content
if (std::string(doc.first_node()->name()).compare("OpenGeoSysSTN"))
{
std::cout << "XmlStnInterface::readFile() - Unexpected XML root." << std::endl;
return 0;
}
// iterate over all station lists
for (rapidxml::xml_node<>* station_list = doc.first_node()->first_node(); station_list; station_list = station_list->next_sibling())
{
std::vector<GEOLIB::Point*>* stations = new std::vector<GEOLIB::Point*>;
std::string stnName("[NN]");
stnName = station_list->first_node("name")->value();
for (rapidxml::xml_node<>* list_item = station_list->first_node(); list_item; list_item = list_item->next_sibling())
{
std::string b(list_item->name());
if (std::string(list_item->name()).compare("stations") == 0)
XmlStnInterface::rapidReadStations(list_item, stations, fileName);
if (std::string(list_item->name()).compare("boreholes") == 0)
XmlStnInterface::rapidReadStations(list_item, stations, fileName);
}
if (!stations->empty())
geoObjects->addStationVec(stations, stnName);
else
delete stations;
}
doc.clear();
delete [] buffer;
return 1;
}
*/
void RapidXMLInterface::readStations(const rapidxml::xml_node<>* station_root, std::vector<GeoLib::Point*> *stations, const std::string &file_name)
{
for (rapidxml::xml_node<>* station_node = station_root->first_node(); station_node; station_node = station_node->next_sibling())
{
if (station_node->first_attribute("id") && station_node->first_attribute("x") && station_node->first_attribute("y"))
{
double zVal(0.0);
if (station_node->first_attribute("z"))
zVal = strtod(station_node->first_attribute("z")->value(), 0);
std::string station_name(""), sensor_data_file_name(""), bdate_str("0000-00-00");
double station_value(0.0), borehole_depth(0.0);
if (station_node->first_node("name"))
station_name = station_node->first_node("name")->value();
if (station_node->first_node("sensordata"))
sensor_data_file_name = station_node->first_node("sensordata")->value();
if (station_node->first_node("value"))
station_value = strtod(station_node->first_node("value")->value(), 0);
/* add other station features here */
if (std::string(station_node->name()).compare("station") == 0)
{
GeoLib::Station* s = new GeoLib::Station(
strtod(station_node->first_attribute("x")->value(), 0),
strtod(station_node->first_attribute("y")->value(), 0),
zVal,
station_name);
s->setStationValue(station_value);
if (!sensor_data_file_name.empty())
s->addSensorDataFromCSV(BaseLib::copyPathToFileName(sensor_data_file_name, file_name));
stations->push_back(s);
}
else if (std::string(station_node->name()).compare("borehole") == 0)
{
if (station_node->first_node("bdepth"))
borehole_depth = strtod(station_node->first_node("bdepth")->value(), 0);
if (station_node->first_node("bdate"))
bdate_str = station_node->first_node("bdate")->value();
/* add other borehole features here */
GeoLib::StationBorehole* s = GeoLib::StationBorehole::createStation(
station_name,
strtod(station_node->first_attribute("x")->value(), 0),
strtod(station_node->first_attribute("y")->value(), 0),
zVal,
borehole_depth,
bdate_str);
s->setStationValue(station_value);
if (station_node->first_node("strat"))
RapidXMLInterface::readStratigraphy(station_node->first_node("strat"), s);
stations->push_back(s);
}
}
else
std::cout << "XmlStnInterface::rapidReadStations() - Attribute missing in <station> tag ..." << std::endl;
}
}
void GeoMapper::mapData()
{
const std::vector<GeoLib::Point*> *points (this->_geo_objects.getPointVec(this->_geo_name));
GeoLib::Station* stn_test = dynamic_cast<GeoLib::Station*>((*points)[0]);
bool is_borehole(false);
if (stn_test != nullptr && static_cast<GeoLib::StationBorehole*>((*points)[0])->type() == GeoLib::Station::StationType::BOREHOLE)
is_borehole = true;
double min_val(0), max_val(0);
if (_mesh)
{
GeoLib::AABB<GeoLib::Point> bounding_box (_mesh->getNodes().begin(), _mesh->getNodes().end());
min_val = bounding_box.getMinPoint()[2];
max_val = bounding_box.getMaxPoint()[2];
}
size_t nPoints (points->size());
if (!is_borehole)
{
for (unsigned j=0; j<nPoints; ++j)
{
GeoLib::Point* pnt ((*points)[j]);
(*pnt)[2] = (_grid) ? this->getMeshElevation((*pnt)[0],(*pnt)[1], min_val, max_val)
: this->getDemElevation((*pnt)[0],(*pnt)[1]);
}
}
else
{
for (unsigned j=0; j<nPoints; ++j)
{
GeoLib::Point* pnt ((*points)[j]);
double offset = (_grid) ? (this->getMeshElevation((*pnt)[0],(*pnt)[1], min_val, max_val) - (*pnt)[2])
: (this->getDemElevation((*pnt)[0],(*pnt)[1]) - (*pnt)[2]);
GeoLib::StationBorehole* borehole = static_cast<GeoLib::StationBorehole*>(pnt);
const std::vector<GeoLib::Point*> layers = borehole->getProfile();
size_t nLayers = layers.size();
for (unsigned k=0; k<nLayers; ++k)
{
GeoLib::Point* layer_pnt = layers[k];
(*layer_pnt)[2] = (*layer_pnt)[2] + offset;
}
}
}
}
/*
// all boreholes to GMS which each borehole in a single file
void StationIO::writeBoreholesToGMS(const std::vector<GeoLib::Point*> *stations)
{
//std::vector<std::string> soilID(1);
std::vector<std::string> soilID = readSoilIDfromFile("d:/BodeTimeline.txt");
for (std::size_t i=0; i<stations->size(); i++)
StationIO::writeBoreholeToGMS(static_cast<GeoLib::StationBorehole*>((*stations)[i]), std::string("Borehole-" + static_cast<GeoLib::StationBorehole*>((*stations)[i])->getName() + ".txt"), soilID);
StationIO::writeSoilIDTable(soilID, "SoilIDReference.txt");
}
*/
void GMSInterface::writeBoreholesToGMS(const std::vector<GeoLib::Point*>* stations,
const std::string &filename)
{
std::ofstream out( filename.c_str(), std::ios::out );
//std::vector<std::string> soilID = readSoilIDfromFile("d:/BodeTimeline.txt");
// write header
out << "name" << "\t" << std::fixed << "X" << "\t" << "Y" << "\t" << "Z" << "\t" <<
"soilID" << "\n";
for (std::size_t j = 0; j < stations->size(); j++)
{
GeoLib::StationBorehole* station =
static_cast<GeoLib::StationBorehole*>((*stations)[j]);
std::vector<GeoLib::Point*> profile = station->getProfile();
std::vector<std::string> soilNames = station->getSoilNames();
//std::size_t idx = 0;
std::string current_soil_name("");
std::size_t nLayers = profile.size();
for (std::size_t i = 1; i < nLayers; i++)
{
if ( (i > 1) && (soilNames[i].compare(soilNames[i - 1]) == 0) )
continue;
//idx = getSoilID(soilID, soilNames[i]);
current_soil_name = soilNames[i];
out << station->getName() << "\t" << std::fixed
<< (*(profile[i - 1]))[0] << "\t"
<< (*(profile[i - 1]))[1] << "\t"
<< (*(profile[i - 1]))[2] << "\t"
<< current_soil_name/*idx*/ << "\n";
}
out << station->getName() << "\t" << std::fixed <<
(*(profile[nLayers - 1]))[0] << "\t"
<< (*(profile[nLayers - 1]))[1] << "\t"
<< (*(profile[nLayers - 1]))[2] << "\t"
<< current_soil_name << "\n"; // this line marks the end of the borehole
}
out.close();
//GMSInterface::writeSoilIDTable(soilID, "d:/SoilIDReference.txt");
}
void GeoMapper::mapData(MeshLib::Mesh const*const mesh)
{
const std::vector<GeoLib::Point*> *points (this->_geo_objects.getPointVec(this->_geo_name));
GeoLib::Station* stn_test = dynamic_cast<GeoLib::Station*>((*points)[0]);
bool is_borehole(false);
if (stn_test != NULL && static_cast<GeoLib::StationBorehole*>((*points)[0])->type() == GeoLib::Station::BOREHOLE)
is_borehole = true;
size_t nPoints (points->size());
if (!is_borehole)
{
for (unsigned j=0; j<nPoints; ++j)
{
GeoLib::Point* pnt ((*points)[j]);
(*pnt)[2] = (_grid) ? this->getMeshElevation((*pnt)[0],(*pnt)[1], mesh)
: this->getDemElevation((*pnt)[0],(*pnt)[1]);
}
}
else
{
for (unsigned j=0; j<nPoints; ++j)
{
GeoLib::Point* pnt ((*points)[j]);
double offset = (_grid) ? (this->getMeshElevation((*pnt)[0],(*pnt)[1], mesh) - (*pnt)[2])
: (this->getDemElevation((*pnt)[0],(*pnt)[1]) - (*pnt)[2]);
GeoLib::StationBorehole* borehole = static_cast<GeoLib::StationBorehole*>(pnt);
const std::vector<GeoLib::Point*> layers = borehole->getProfile();
size_t nLayers = layers.size();
for (unsigned k=0; k<nLayers; ++k)
{
GeoLib::Point* layer_pnt = layers[k];
(*layer_pnt)[2] = (*layer_pnt)[2] + offset;
}
}
}
}
void XmlStnInterface::readStations( const QDomNode &stationsRoot,
std::vector<GEOLIB::Point*>* stations,
const std::string &file_name )
{
QDomElement station = stationsRoot.firstChildElement();
while (!station.isNull())
{
if (station.hasAttribute("id") && station.hasAttribute("x") &&
station.hasAttribute("y"))
{
std::string stationName("[NN]");
std::string sensor_data_file_name("");
std::string boreholeDate("0000-00-00");
double boreholeDepth(0.0), stationValue(0.0);
QDomNodeList stationFeatures = station.childNodes();
for(int i = 0; i < stationFeatures.count(); i++)
{
// check for general station features
const QDomNode feature_node (stationFeatures.at(i));
const QString feature_name (feature_node.nodeName());
const std::string element_text (feature_node.toElement().text().toStdString());
if (feature_name.compare("name") == 0)
stationName = feature_node.toElement().text().toStdString();
if (feature_name.compare("sensordata") == 0)
sensor_data_file_name = feature_node.toElement().text().toStdString();
/* add other station features here */
// check for general borehole features
else if (feature_name.compare("value") == 0)
stationValue = strtod(element_text.c_str(), 0);
else if (feature_name.compare("bdepth") == 0)
boreholeDepth = strtod(element_text.c_str(), 0);
else if (feature_name.compare("bdate") == 0)
boreholeDate = element_text;
/* add other borehole features here */
}
double zVal = (station.hasAttribute("z")) ? strtod((station.attribute("z")).toStdString().c_str(), 0) : 0.0;
if (station.nodeName().compare("station") == 0)
{
GEOLIB::Station* s =
new GEOLIB::Station(
strtod((station.attribute("x")).toStdString().c_str(), 0),
strtod((station.attribute("y")).toStdString().c_str(), 0),
zVal,
stationName);
s->setStationValue(stationValue);
if (!sensor_data_file_name.empty())
s->addSensorDataFromCSV(BaseLib::copyPathToFileName(sensor_data_file_name, file_name));
stations->push_back(s);
}
else if (station.nodeName().compare("borehole") == 0)
{
GEOLIB::StationBorehole* s = GEOLIB::StationBorehole::createStation(
stationName,
strtod((station.attribute("x")).toStdString().c_str(), 0),
strtod((station.attribute("y")).toStdString().c_str(), 0),
zVal,
boreholeDepth,
boreholeDate);
s->setStationValue(stationValue);
/* add stratigraphy to the borehole */
for(int j = 0; j < stationFeatures.count(); j++)
if (stationFeatures.at(j).nodeName().compare("strat") == 0)
this->readStratigraphy(stationFeatures.at(j), s);
stations->push_back(s);
}
}
else
std::cout <<
"XmlStnInterface::readStations() - Attribute missing in <station> tag ..." <<
"\n";
station = station.nextSiblingElement();
}
}
int GMSInterface::readBoreholesFromGMS(std::vector<GEOLIB::Point*>* boreholes,
const std::string &filename)
{
double depth(-9999.0);
std::string line(""), cName(""), sName("");
std::list<std::string>::const_iterator it;
GEOLIB::Point* pnt = new GEOLIB::Point();
GEOLIB::StationBorehole* newBorehole = NULL;
std::ifstream in( filename.c_str() );
if (!in.is_open())
{
std::cout << "GMSInterface::readBoreholeFromGMS() - Could not open file...\n";
return 0;
}
/* skipping first line because it contains field names */
getline(in, line);
/* read all stations */
while ( getline(in, line) )
{
std::list<std::string> fields = splitString(line, '\t');
if (fields.size() >= 5)
{
if (fields.begin()->compare(cName) == 0) // add new layer
{
it = fields.begin();
(*pnt)[0] = strtod((++it)->c_str(), 0);
(*pnt)[1] = strtod((++it)->c_str(), 0);
(*pnt)[2] = strtod((++it)->c_str(), 0);
// check if current layer has a thickness of 0.0.
// if so skip it since it will mess with the vtk-visualisation later on!
if ((*pnt)[2] != depth)
{
newBorehole->addSoilLayer((*pnt)[0], (*pnt)[1], (*pnt)[2], sName);
sName = (*(++it));
depth = (*pnt)[2];
}
else
std::cout << "Warning: Skipped layer \"" << sName << "\" in borehole \""
<< cName << "\" because of thickness 0.0." << "\n";
}
else // add new borehole
{
if (newBorehole != NULL)
{
newBorehole->setDepth((*newBorehole)[2] - depth);
boreholes->push_back(newBorehole);
}
cName = *fields.begin();
it = fields.begin();
(*pnt)[0] = strtod((++it)->c_str(), 0);
(*pnt)[1] = strtod((++it)->c_str(), 0);
(*pnt)[2] = strtod((++it)->c_str(), 0);
sName = (*(++it));
newBorehole = GEOLIB::StationBorehole::createStation(cName, (*pnt)[0], (*pnt)[1], (*pnt)[2], 0);
depth = (*pnt)[2];
}
}
else
std::cout <<
"GMSInterface::readBoreholeFromGMS() - Error reading format..." <<
"\n";
}
// write the last borehole from the file
if (newBorehole != NULL)
{
newBorehole->setDepth((*newBorehole)[2] - depth);
boreholes->push_back(newBorehole);
}
in.close();
if (boreholes->empty())
return 0;
return 1;
}
