Beispiel #1
0
int MaskPeaksWorkspace::findPixelID(std::string bankName, int col, int row) {
  Geometry::Instrument_const_sptr Iptr = m_inputW->getInstrument();
  boost::shared_ptr<const IComponent> parent =
      Iptr->getComponentByName(bankName);
  if (parent->type().compare("RectangularDetector") == 0) {
    boost::shared_ptr<const RectangularDetector> RDet =
        boost::dynamic_pointer_cast<const RectangularDetector>(parent);

    boost::shared_ptr<Detector> pixel = RDet->getAtXY(col, row);
    return pixel->getID();
  } else {
    std::string bankName0 = bankName;
    // Only works for WISH
    bankName0.erase(0, 4);
    std::ostringstream pixelString;
    pixelString << Iptr->getName() << "/" << bankName0 << "/" << bankName
                << "/tube" << std::setw(3) << std::setfill('0') << col
                << "/pixel" << std::setw(4) << std::setfill('0') << row;
    boost::shared_ptr<const Geometry::IComponent> component =
        Iptr->getComponentByName(pixelString.str());
    boost::shared_ptr<const Detector> pixel =
        boost::dynamic_pointer_cast<const Detector>(component);
    return pixel->getID();
  }
}
Beispiel #2
0
/**
 * Get position in space of a componentName
 */
V3D LoadILLSANS::getComponentPosition(const std::string &componentName) {
  Geometry::Instrument_const_sptr instrument =
      m_localWorkspace->getInstrument();
  Geometry::IComponent_const_sptr component =
      instrument->getComponentByName(componentName);
  return component->getPos();
}
Beispiel #3
0
bool CentroidPeaks::edgePixel(std::string bankName, int col, int row,
                              int Edge) {
    if (bankName.compare("None") == 0)
        return false;
    Geometry::Instrument_const_sptr Iptr = inWS->getInstrument();
    boost::shared_ptr<const IComponent> parent =
        Iptr->getComponentByName(bankName);
    if (parent->type().compare("RectangularDetector") == 0) {
        boost::shared_ptr<const RectangularDetector> RDet =
            boost::dynamic_pointer_cast<const RectangularDetector>(parent);

        return col < Edge || col >= (RDet->xpixels() - Edge) || row < Edge ||
               row >= (RDet->ypixels() - Edge);
    } else {
        std::vector<Geometry::IComponent_const_sptr> children;
        boost::shared_ptr<const Geometry::ICompAssembly> asmb =
            boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(parent);
        asmb->getChildren(children, false);
        boost::shared_ptr<const Geometry::ICompAssembly> asmb2 =
            boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(children[0]);
        std::vector<Geometry::IComponent_const_sptr> grandchildren;
        asmb2->getChildren(grandchildren, false);
        int NROWS = static_cast<int>(grandchildren.size());
        int NCOLS = static_cast<int>(children.size());
        // Wish pixels and tubes start at 1 not 0
        return col - 1 < Edge || col - 1 >= (NCOLS - Edge) || row - 1 < Edge ||
               row - 1 >= (NROWS - Edge);
    }
    return false;
}
Beispiel #4
0
void LoadILLIndirect::moveComponent(const std::string &componentName,
                                    double twoTheta, double offSet) {

  try {

    Geometry::Instrument_const_sptr instrument =
        m_localWorkspace->getInstrument();
    Geometry::IComponent_const_sptr component =
        instrument->getComponentByName(componentName);

    double r, theta, phi, newTheta, newR;
    V3D oldPos = component->getPos();
    oldPos.getSpherical(r, theta, phi);

    newTheta = twoTheta;
    newR = offSet;

    V3D newPos;
    newPos.spherical(newR, newTheta, phi);

    // g_log.debug() << tube->getName() << " : t = " << theta << " ==> t = " <<
    // newTheta << "\n";
    Geometry::ParameterMap &pmap = m_localWorkspace->instrumentParameters();
    Geometry::ComponentHelper::moveComponent(
        *component, pmap, newPos, Geometry::ComponentHelper::Absolute);

  } catch (Mantid::Kernel::Exception::NotFoundError &) {
    throw std::runtime_error("Error when trying to move the " + componentName +
                             " : NotFoundError");
  } catch (std::runtime_error &) {
    throw std::runtime_error("Error when trying to move the " + componentName +
                             " : runtime_error");
  }
}
Beispiel #5
0
 V3D LoadHelper::getComponentPosition(API::MatrixWorkspace_sptr ws, const std::string &componentName)
 {
   try
   {
     Geometry::Instrument_const_sptr instrument = ws->getInstrument();
     Geometry::IComponent_const_sptr component = instrument->getComponentByName(componentName);
     V3D pos = component->getPos();
     return pos;
   } catch (Mantid::Kernel::Exception::NotFoundError&)
   {
     throw std::runtime_error("Error when trying to move the " + componentName + " : NotFoundError");
   }
 }
Beispiel #6
0
/** Extract a component's detectors and return it within detectors array
 *  It is a generalized version of bankToDetectors()
 *
 * @param componentnames -- vector of component names to process
 * @param detectors      -- vector of detector ids, which belongs to components
 *provided as input.
 */
void LoadMask::componentToDetectors(
    const std::vector<std::string> &componentnames,
    std::vector<detid_t> &detectors) {
  Geometry::Instrument_const_sptr minstrument = m_maskWS->getInstrument();

  for (auto &componentname : componentnames) {
    g_log.debug() << "Component name = " << componentname << '\n';

    // a) get component
    Geometry::IComponent_const_sptr component =
        minstrument->getComponentByName(componentname);
    if (component)
      g_log.debug() << "Component ID = " << component->getComponentID() << '\n';
    else {
      // A non-exiting component.  Ignore
      g_log.warning() << "Component " << componentname << " does not exist!\n";
      continue;
    }

    // b) component -> component assembly --> children (more than detectors)
    boost::shared_ptr<const Geometry::ICompAssembly> asmb =
        boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(component);
    std::vector<Geometry::IComponent_const_sptr> children;
    asmb->getChildren(children, true);

    g_log.debug() << "Number of Children = " << children.size() << '\n';

    size_t numdets(0);
    detid_t id_min(std::numeric_limits<Mantid::detid_t>::max());
    detid_t id_max(0);

    for (const auto &child : children) {
      // c) convert component to detector
      Geometry::IDetector_const_sptr det =
          boost::dynamic_pointer_cast<const Geometry::IDetector>(child);

      if (det) {
        detid_t detid = det->getID();
        detectors.push_back(detid);
        numdets++;
        if (detid < id_min)
          id_min = detid;
        if (detid > id_max)
          id_max = detid;
      }
    }

    g_log.debug() << "Number of Detectors in Children = " << numdets
                  << "  Range = " << id_min << ", " << id_max << '\n';
  } // for component
}
Beispiel #7
0
void PoldiBasicChopper::loadConfiguration(
    Geometry::Instrument_const_sptr poldiInstrument) {
  Geometry::ICompAssembly_const_sptr chopperGroup =
      boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(
          poldiInstrument->getComponentByName(std::string("chopper")));

  size_t numberOfSlits = chopperGroup->nelements();

  std::vector<double> slitPositions(numberOfSlits);
  for (size_t i = 0; i < numberOfSlits; ++i) {
    slitPositions[i] =
        chopperGroup->getChild(static_cast<const int>(i))->getPos().X();
  }

  double distance = chopperGroup->getPos().norm() * 1000.0;
  double t0 = chopperGroup->getNumberParameter("t0").front();
  double t0const = chopperGroup->getNumberParameter("t0_const").front();

  initializeFixedParameters(slitPositions, distance, t0, t0const);
}
/**
  @param  ws           Name of workspace containing peaks
  @param  bankName     Name of bank containing peak
  @param  col          Column number containing peak
  @param  row          Row number containing peak
  @param  Edge         Number of edge points for each bank
  @return True if peak is on edge
*/
bool OptimizeLatticeForCellType::edgePixel(PeaksWorkspace_sptr ws,
                                           std::string bankName, int col,
                                           int row, int Edge) {
  if (bankName.compare("None") == 0)
    return false;
  Geometry::Instrument_const_sptr Iptr = ws->getInstrument();
  boost::shared_ptr<const IComponent> parent =
      Iptr->getComponentByName(bankName);
  if (parent->type().compare("RectangularDetector") == 0) {
    boost::shared_ptr<const RectangularDetector> RDet =
        boost::dynamic_pointer_cast<const RectangularDetector>(parent);

    return col < Edge || col >= (RDet->xpixels() - Edge) || row < Edge ||
           row >= (RDet->ypixels() - Edge);
  } else {
    std::vector<Geometry::IComponent_const_sptr> children;
    boost::shared_ptr<const Geometry::ICompAssembly> asmb =
        boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(parent);
    asmb->getChildren(children, false);
    int startI = 1;
    if (children[0]->getName() == "sixteenpack") {
      startI = 0;
      parent = children[0];
      children.clear();
      boost::shared_ptr<const Geometry::ICompAssembly> asmb =
          boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(parent);
      asmb->getChildren(children, false);
    }
    boost::shared_ptr<const Geometry::ICompAssembly> asmb2 =
        boost::dynamic_pointer_cast<const Geometry::ICompAssembly>(children[0]);
    std::vector<Geometry::IComponent_const_sptr> grandchildren;
    asmb2->getChildren(grandchildren, false);
    int NROWS = static_cast<int>(grandchildren.size());
    int NCOLS = static_cast<int>(children.size());
    // Wish pixels and tubes start at 1 not 0
    return col - startI < Edge || col - startI >= (NCOLS - Edge) ||
           row - startI < Edge || row - startI >= (NROWS - Edge);
  }
  return false;
}
Beispiel #9
0
    void LoadHelper::rotateComponent(API::MatrixWorkspace_sptr ws, const std::string &componentName,
        const Kernel::Quat & rot)
    {

      try
      {

        Geometry::Instrument_const_sptr instrument = ws->getInstrument();
        Geometry::IComponent_const_sptr component = instrument->getComponentByName(componentName);

        //g_log.debug() << tube->getName() << " : t = " << theta << " ==> t = " << newTheta << "\n";
        Geometry::ParameterMap& pmap = ws->instrumentParameters();
        Geometry::ComponentHelper::rotateComponent(*component, pmap, rot,
            Geometry::ComponentHelper::Absolute);

      } catch (Mantid::Kernel::Exception::NotFoundError&)
      {
        throw std::runtime_error("Error when trying to move the " + componentName + " : NotFoundError");
      } catch (std::runtime_error &)
      {
        throw std::runtime_error("Error when trying to move the " + componentName + " : runtime_error");
      }

    }
/**
 * Cache frequently accessed values
 * @param instrument : The instrument for this run
 * @param detID : The det ID for this observation
 */
void CachedExperimentInfo::initCaches(
    const Geometry::Instrument_const_sptr &instrument, const detid_t detID) {
  // Throws if detector does not exist
  // Takes into account possible detector mapping
  IDetector_const_sptr det = m_exptInfo.getDetectorByID(detID);

  // Instrument distances
  boost::shared_ptr<const ReferenceFrame> refFrame =
      instrument->getReferenceFrame();
  m_beam = refFrame->pointingAlongBeam();
  m_up = refFrame->pointingUp();
  m_horiz = refFrame->pointingHorizontal();

  IComponent_const_sptr source = instrument->getSource();
  IComponent_const_sptr sample = instrument->getSample();
  IComponent_const_sptr aperture =
      instrument->getComponentByName("aperture", 1);
  if (!aperture) {
    throw std::invalid_argument(
        "No component named \"aperture\" found in instrument.");
  }
  IObjComponent_const_sptr firstChopper = instrument->getChopperPoint(0);
  const Kernel::V3D samplePos = sample->getPos();
  const Kernel::V3D beamDir = samplePos - source->getPos();

  // Cache
  m_twoTheta = det->getTwoTheta(samplePos, beamDir);
  m_phi = det->getPhi();
  m_modToChop = firstChopper->getDistance(*source);
  m_apertureToChop = firstChopper->getDistance(*aperture);
  m_chopToSample = sample->getDistance(*firstChopper);
  m_sampleToDet = det->getDistance(*sample);

  // Aperture
  Geometry::BoundingBox apertureBox;
  aperture->getBoundingBox(apertureBox);
  if (apertureBox.isNull()) {
    throw std::invalid_argument("CachedExperimentInfo::initCaches - Aperture "
                                "has no bounding box, cannot sample from it");
  }
  m_apertureSize.first = apertureBox.maxPoint()[0] - apertureBox.minPoint()[0];
  m_apertureSize.second = apertureBox.maxPoint()[1] - apertureBox.minPoint()[1];

  // Sample volume
  const API::Sample &sampleDescription = m_exptInfo.sample();
  const Geometry::Object &shape = sampleDescription.getShape();
  m_sampleWidths = shape.getBoundingBox().width();

  // Detector volume
  // Make sure it encompasses all possible detectors
  det->getBoundingBox(m_detBox);
  if (m_detBox.isNull()) {
    throw std::invalid_argument("CachedExperimentInfo::initCaches - Detector "
                                "has no bounding box, cannot sample from it. "
                                "ID:" +
                                boost::lexical_cast<std::string>(det->getID()));
  }

  const double rad2deg = 180. / M_PI;
  const double thetaInDegs = twoTheta() * rad2deg;
  const double phiInDegs = phi() * rad2deg;

  m_gonimeter = new Goniometer;
  m_gonimeter->makeUniversalGoniometer();
  m_gonimeter->setRotationAngle("phi", thetaInDegs);
  m_gonimeter->setRotationAngle("chi", phiInDegs);
  m_sampleToDetMatrix =
      m_exptInfo.sample().getOrientedLattice().getU() * m_gonimeter->getR();

  // EFixed
  m_efixed = m_exptInfo.getEFixed(det);
}
Beispiel #11
0
  std::string  LoadIsawPeaks::ApplyCalibInfo(std::ifstream & in, std::string startChar,Geometry::Instrument_const_sptr instr_old, Geometry::Instrument_const_sptr instr,
      double &T0)
  {
    ParameterMap_sptr parMap1= instr_old->getParameterMap();

    ParameterMap_sptr parMap= instr->getParameterMap();


    while( in.good() && (startChar.size() <1 || startChar !="7") )
       {
         readToEndOfLine( in, true);
         startChar = getWord(in, false);
       }
     if( !(in.good()))
     {
       //g_log.error()<<"Peaks file has no time shift and L0 info"<<std::endl;
       throw std::invalid_argument("Peaks file has no time shift and L0 info");
     }
     std::string L1s= getWord(in,false);
     std::string T0s =getWord(in, false);
     if( L1s.length() < 1 || T0s.length() < 1)
     {
       g_log.error()<<"Missing L1 or Time offset"<<std::endl;
       throw std::invalid_argument("Missing L1 or Time offset");
     }
     double L1;
     try
     {
       std::istringstream iss( L1s+" "+T0s, std::istringstream::in);
       iss>>L1;
       iss>>T0;
       V3D sampPos=instr->getSample()->getPos();
       SCDCalibratePanels::FixUpSourceParameterMap(instr, L1/100, sampPos,parMap1);

     }catch(...)
     {
       g_log.error()<<"Invalid L1 or Time offset"<<std::endl;
       throw std::invalid_argument("Invalid L1 or Time offset");

     }

     readToEndOfLine( in, true);
     startChar = getWord(in , false);
     while( in.good() && (startChar.size() <1 || startChar !="5") )
            {
              readToEndOfLine( in, true);
              startChar = getWord(in, false);
            }

    if( !(in.good()))
    {
      g_log.error()<<"Peaks file has no detector panel info"<<std::endl;
      throw std::invalid_argument("Peaks file has no detector panel info");
    }


    while( startChar =="5")
    {

      std::string line;
      for( int i=0; i<16;i++)
      {
        std::string s= getWord(in, false);
        if( s.size() < 1)
        {
          g_log.error()<<"Not enough info to describe panel "<<std::endl;
          throw std::length_error("Not enough info to describe panel ");
        }
       line +=" "+s;;
      }

      readToEndOfLine(in, true);
      startChar = getWord( in, false);// blank lines ?? and # lines ignore

      std::istringstream iss( line, std::istringstream::in);
      int  bankNum,nrows,ncols;
      double width,height,depth,detD,Centx,Centy,Centz,Basex,Basey,Basez,
             Upx,Upy,Upz;
      try
      {
         iss>>bankNum>>nrows>>ncols>>width>>height>>depth>>detD
            >>Centx>>Centy>>Centz>>Basex>>Basey>>Basez
            >>Upx>>Upy>>Upz;
      }catch(...)
      {

        g_log.error()<<"incorrect type of data for panel "<<std::endl;
        throw std::length_error("incorrect type of data for panel ");
      }

      std::string SbankNum = boost::lexical_cast<std::string>(bankNum);

      std::string bankName = "bank"+SbankNum;
      boost::shared_ptr<const Geometry::IComponent> bank =instr_old->getComponentByName( bankName );

      if( !bank)
      {
        g_log.error()<<"There is no bank "<< bankName<<" in the instrument"<<std::endl;
        throw std::length_error("There is no bank "+ bankName+" in the instrument");
      }

      V3D dPos= V3D(Centx,Centy,Centz)/100.0- bank->getPos();
      V3D Base(Basex,Basey,Basez), Up(Upx,Upy,Upz);
      V3D ToSamp =Base.cross_prod(Up);
      Base.normalize();
      Up.normalize();
      ToSamp.normalize();
      Quat thisRot(Base,Up,ToSamp);
      Quat bankRot(bank->getRotation());
      bankRot.inverse();
      Quat dRot = thisRot*bankRot;

      boost::shared_ptr< const Geometry::RectangularDetector>bankR= boost::dynamic_pointer_cast
                         <const Geometry::RectangularDetector>( bank);

      double DetWScale = 1, DetHtScale = 1;
      if( bank)
      {
        DetWScale = width/bankR->xsize()/100;
        DetHtScale = height/bankR->ysize()/100;

      }
      std::vector<std::string> bankNames;
      bankNames.push_back(bankName);

      SCDCalibratePanels::FixUpBankParameterMap(bankNames,instr, dPos,
          dRot,DetWScale,DetHtScale , parMap1, false);

    }
    return startChar;
  }