void setUp(void)
{
// Load Image Data
m_Image = dynamic_cast<mitk::Image*>(mitk::IOUtil::Load(GetTestDataFilePath("Pic3D.nrrd"))[0].GetPointer());
mitk::CastToItkImage(m_Image,m_ItkImage);
// Create a single mask with only one pixel within the regions
mitk::Image::Pointer mask1 = dynamic_cast<mitk::Image*>(mitk::IOUtil::Load(GetTestDataFilePath("Pic3D.nrrd"))[0].GetPointer());
mitk::CastToItkImage(mask1,m_ItkMask);
m_ItkMask->FillBuffer(0);
MaskType::IndexType index;
index[0]=88;index[1]=81;index[2]=13;
m_ItkMask->SetPixel(index, 1);
MITK_INFO << "Pixel Value: "<<m_ItkImage->GetPixel(index);
mitk::CastToMitkImage(m_ItkMask, m_Mask);
// Create a mask with a covered region
mitk::Image::Pointer lmask1 = dynamic_cast<mitk::Image*>(mitk::IOUtil::Load(GetTestDataFilePath("Pic3D.nrrd"))[0].GetPointer());
mitk::CastToItkImage(lmask1,m_ItkMask1);
m_ItkMask1->FillBuffer(0);
int range=2;
for (int x = 88-range;x < 88+range+1;++x)
{
for (int y=81-range;y<81+range+1;++y)
{
for (int z=13-range;z<13+range+1;++z)
{
index[0] = x;
index[1] = y;
index[2] = z;
//MITK_INFO << "Pixel: " <<m_ItkImage->GetPixel(index);
m_ItkMask1->SetPixel(index, 1);
}
}
}
mitk::CastToMitkImage(m_ItkMask1, m_Mask1);
m_GradientImage=GenerateGradientWithDimXImage<unsigned char>(5,5,5);
m_GradientMask = GenerateMaskImage<unsigned char>(5,5,5);
}
