void ModelOutput::Write(const CModel& model, std::ostream &stream, ModelFormat format)
{
stream.exceptions(std::ios_base::failbit | std::ios_base::badbit);
try
{
switch (format)
{
case ModelFormat::Text:
WriteTextModel(model, stream);
break;
case ModelFormat::Binary:
WriteBinaryModel(model, stream);
break;
case ModelFormat::Old:
WriteOldModel(model, stream);
break;
}
}
catch (const CModelIOException& e)
{
throw;
}
catch (const std::exception& e)
{
throw CModelIOException(std::string("Error saving model data: ") + e.what());
}
}
// Save & change and restore stream properties
void
saver_tests_2
(
std::istream & input,
std::ostream & output,
std::ostream & err
)
{
using std::locale;
using std::ios_base;
boost::io::ios_tie_saver const its( input, &err );
boost::io::ios_rdbuf_saver const irs( output, err.rdbuf() );
boost::io::ios_iword_saver const iis( output, my_index, 69L );
boost::io::ios_pword_saver const ipws( output, my_index, &err );
output << "The data is (a third time; adding the numbers):\n";
boost::io::ios_flags_saver const ifls( output, (output.flags()
& ~ios_base::adjustfield) | ios_base::showpos | ios_base::boolalpha
| (ios_base::internal & ios_base::adjustfield) );
boost::io::ios_precision_saver const iprs( output, 9 );
boost::io::ios_fill_saver const ifis( output, '@' );
output << '\t' << test_string << '\n';
boost::io::ios_width_saver const iws( output, 12 );
output.put( '\t' );
output << test_num1 + test_num2;
output.put( '\n' );
locale loc( locale::classic(),
new backward_bool_names );
boost::io::ios_locale_saver const ils( output, loc );
output << '\t' << test_bool << '\n';
BOOST_CHECK( &err == output.pword(my_index) );
BOOST_CHECK( 69L == output.iword(my_index) );
try
{
boost::io::ios_exception_saver const ies( output, ios_base::eofbit );
boost::io::ios_iostate_saver const iis( output, output.rdstate()
| ios_base::eofbit );
BOOST_ERROR( "previous line should have thrown" );
}
catch ( ios_base::failure &f )
{
err << "Got the expected I/O failure: \"" << f.what() << "\".\n";
BOOST_CHECK( output.exceptions() == ios_base::goodbit );
}
catch ( ... )
{
err << "Got an unknown error when doing exception test!\n";
throw;
}
}
inline std::ostream& alert_stream()
{
// Double parentheses: don't parse comma as a macro parameter separator.
BOOST_STATIC_ASSERT((boost::is_base_and_derived<alert_buf,T>::value));
static T buffer_;
static std::ostream stream_(&buffer_);
stream_.clear();
stream_.exceptions(std::ios_base::failbit | std::ios_base::badbit);
return stream_;
}
/*
* Writes the given SBML document to the output stream.
*
* @return true on success and false if one of the underlying parser
* components fail (rare).
*/
bool
SBMLWriter::writeSBML (const SBMLDocument* d, std::ostream& stream)
{
bool result = false;
try
{
stream.exceptions(ios_base::badbit | ios_base::failbit | ios_base::eofbit);
XMLOutputStream xos(stream, "UTF-8", true, mProgramName,
mProgramVersion);
d->write(xos);
stream << endl;
result = true;
}
catch (ios_base::failure&)
{
SBMLErrorLog *log = (const_cast<SBMLDocument *>(d))->getErrorLog();
log->logError(XMLFileOperationError);
}
return result;
}
bool renderPresentation(
const std::map<std::string,std::string>& vars,
const std::vector<boost::iostreams::regex_filter>& filters,
std::ostream& os,
std::string* pErrMsg)
{
std::string presentationTemplate =
resourceFiles().get("presentation/slides.html");
std::istringstream templateStream(presentationTemplate);
try
{
os.exceptions(std::istream::failbit | std::istream::badbit);
boost::iostreams::filtering_ostream filteredStream ;
// template filter
text::TemplateFilter templateFilter(vars);
filteredStream.push(templateFilter);
// custom filters
for (std::size_t i=0; i<filters.size(); i++)
filteredStream.push(filters[i]);
// target stream
filteredStream.push(os);
boost::iostreams::copy(templateStream, filteredStream, 128);
}
catch(const std::exception& e)
{
*pErrMsg = e.what();
return false;
}
return true;
}
// Save, change, and restore stream properties
void
saver_tests_1
(
std::istream & input,
std::ostream & output,
std::ostream & err
)
{
using std::locale;
using std::ios_base;
using std::setw;
boost::io::ios_flags_saver const ifls( output );
boost::io::ios_precision_saver const iprs( output );
boost::io::ios_width_saver const iws( output );
boost::io::ios_tie_saver const its( input );
boost::io::ios_rdbuf_saver const irs( output );
boost::io::ios_fill_saver const ifis( output );
boost::io::ios_locale_saver const ils( output );
boost::io::ios_iword_saver const iis( output, my_index );
boost::io::ios_pword_saver const ipws( output, my_index );
locale loc( locale::classic(), new backward_bool_names );
input.tie( &err );
output.rdbuf( err.rdbuf() );
output.iword( my_index ) = 69L;
output.pword( my_index ) = &err;
output << "The data is (again):\n";
output.setf( ios_base::showpos | ios_base::boolalpha );
output.setf( ios_base::internal, ios_base::adjustfield );
output.fill( '@' );
output.precision( 9 );
output << '\t' << test_string << '\n';
output << '\t' << setw( 10 ) << test_num1 << '\n';
output << '\t' << setw( 15 ) << test_num2 << '\n';
output.imbue( loc );
output << '\t' << test_bool << '\n';
BOOST_CHECK( &err == output.pword(my_index) );
BOOST_CHECK( 69L == output.iword(my_index) );
try
{
boost::io::ios_exception_saver const ies( output );
boost::io::ios_iostate_saver const iis( output );
output.exceptions( ios_base::eofbit );
output.setstate( ios_base::eofbit );
BOOST_ERROR( "previous line should have thrown" );
}
catch ( ios_base::failure &f )
{
err << "Got the expected I/O failure: \"" << f.what() << "\".\n";
BOOST_CHECK( output.exceptions() == ios_base::goodbit );
}
catch ( ... )
{
err << "Got an unknown error when doing exception test!\n";
throw;
}
}
//Rebuild PE image and write it to "out" ostream
//If strip_dos_header is true, DOS headers partially will be used for PE headers
//If change_size_of_headers == true, SizeOfHeaders will be recalculated automatically
//If save_bound_import == true, existing bound import directory will be saved correctly (because some compilers and bind.exe put it to PE headers)
void rebuild_pe(pe_base& pe, std::ostream& out, bool strip_dos_header, bool change_size_of_headers, bool save_bound_import)
{
if(out.bad())
throw pe_exception("Stream is bad", pe_exception::stream_is_bad);
if(save_bound_import && pe.has_bound_import())
{
if(pe.section_data_length_from_rva(pe.get_directory_rva(image_directory_entry_bound_import), pe.get_directory_rva(image_directory_entry_bound_import), section_data_raw, true)
< pe.get_directory_size(image_directory_entry_bound_import))
throw pe_exception("Incorrect bound import directory", pe_exception::incorrect_bound_import_directory);
}
//Change ostream state
out.exceptions(std::ios::goodbit);
out.clear();
uint32_t original_bound_import_rva = pe.has_bound_import() ? pe.get_directory_rva(image_directory_entry_bound_import) : 0;
if(original_bound_import_rva && original_bound_import_rva > pe.get_size_of_headers())
{
//No need to do anything with bound import directory
//if it is placed inside of any section, not headers
original_bound_import_rva = 0;
save_bound_import = false;
}
{
image_dos_header dos_header;
//Rebuild PE image headers
rebuild_pe(pe, dos_header, strip_dos_header, change_size_of_headers, save_bound_import);
//Write DOS header
out.write(reinterpret_cast<const char*>(&dos_header), strip_dos_header ? 8 * sizeof(uint16_t) : sizeof(image_dos_header));
}
//If we have stub overlay, write it too
{
const std::string& stub = pe.get_stub_overlay();
if(stub.size())
{
out.write(stub.data(), stub.size());
size_t aligned_size = pe_utils::align_up(stub.size(), sizeof(uint32_t));
//Align PE header, which is right after rich overlay
while(aligned_size > stub.size())
{
out.put('\0');
--aligned_size;
}
}
}
//Write NT headers
out.write(static_cast<const pe_base&>(pe).get_nt_headers_ptr(), pe.get_sizeof_nt_header()
- sizeof(image_data_directory) * (image_numberof_directory_entries - pe.get_number_of_rvas_and_sizes()));
//Write section headers
const section_list& sections = pe.get_image_sections();
for(section_list::const_iterator it = sections.begin(); it != sections.end(); ++it)
{
out.write(reinterpret_cast<const char*>(&(*it).get_raw_header()), sizeof(image_section_header));
}
//Write bound import data if requested
if(save_bound_import && pe.has_bound_import())
{
out.write(pe.section_data_from_rva(original_bound_import_rva, section_data_raw, true),
pe.get_directory_size(image_directory_entry_bound_import));
}
//Write section data finally
for(section_list::const_iterator it = sections.begin(); it != sections.end(); ++it)
{
const section& s = *it;
std::streamoff wpos = out.tellp();
//Fill unused overlay data between sections with null bytes
for(unsigned int i = 0; i < s.get_pointer_to_raw_data() - wpos; i++)
out.put(0);
//Write raw section data
out.write(s.get_raw_data().data(), s.get_size_of_raw_data());
}
}