int main( int argc, char* argv[] )
{
#ifdef EPETRA_MPI
// Initialize MPI
MPI_Init(&argc,&argv);
Epetra_MpiComm Comm( MPI_COMM_WORLD );
#else
Epetra_SerialComm Comm;
#endif
// Create command line processor
Teuchos::CommandLineProcessor RBGen_CLP;
RBGen_CLP.recogniseAllOptions( false );
RBGen_CLP.throwExceptions( false );
// Generate list of acceptable command line options
bool verbose = false;
std::string xml_file = "";
RBGen_CLP.setOption("verbose", "quiet", &verbose, "Print messages and results.");
RBGen_CLP.setOption("xml-file", &xml_file, "XML Input File");
// Process command line.
Teuchos::CommandLineProcessor::EParseCommandLineReturn
parseReturn= RBGen_CLP.parse( argc, argv );
if( parseReturn == Teuchos::CommandLineProcessor::PARSE_HELP_PRINTED ) {
return 0;
}
if( parseReturn != Teuchos::CommandLineProcessor::PARSE_SUCCESSFUL ) {
#ifdef EPETRA_MPI
MPI_Finalize();
#endif
return -1; // Error!
}
// Check to make sure an XML input file was provided
TEUCHOS_TEST_FOR_EXCEPTION(xml_file == "", std::invalid_argument, "ERROR: An XML file was not provided; use --xml-file to provide an XML input file for this RBGen driver.");
Teuchos::Array<Teuchos::RCP<Teuchos::Time> > timersRBGen;
//
// ---------------------------------------------------------------
// CREATE THE INITIAL PARAMETER LIST FROM THE INPUT XML FILE
// ---------------------------------------------------------------
//
Teuchos::RCP<Teuchos::ParameterList> BasisParams = RBGen::createParams( xml_file );
if (verbose && Comm.MyPID() == 0)
{
std::cout<<"-------------------------------------------------------"<<std::endl;
std::cout<<"Input Parameter List: "<<std::endl;
std::cout<<"-------------------------------------------------------"<<std::endl;
BasisParams->print();
}
//
// ---------------------------------------------------------------
// CREATE THE FILE I/O HANDLER
// ---------------------------------------------------------------
//
// - First create the abstract factory for the file i/o handler.
//
RBGen::EpetraMVFileIOFactory fio_factory;
//
// - Then use the abstract factory to create the file i/o handler specified in the parameter list.
//
Teuchos::RCP<Teuchos::Time> timerFileIO = Teuchos::rcp( new Teuchos::Time("Create File I/O Handler") );
timersRBGen.push_back( timerFileIO );
//
Teuchos::RCP< RBGen::FileIOHandler<Epetra_MultiVector> > mvFileIO;
Teuchos::RCP< RBGen::FileIOHandler<Epetra_Operator> > opFileIO =
Teuchos::rcp( new RBGen::EpetraCrsMatrixFileIOHandler() );
{
Teuchos::TimeMonitor lcltimer( *timerFileIO );
mvFileIO = fio_factory.create( *BasisParams );
//
// Initialize file IO handlers
//
mvFileIO->Initialize( BasisParams );
opFileIO->Initialize( BasisParams );
}
if (verbose && Comm.MyPID() == 0)
{
std::cout<<"-------------------------------------------------------"<<std::endl;
std::cout<<"File I/O Handlers Generated"<<std::endl;
std::cout<<"-------------------------------------------------------"<<std::endl;
}
//
// ---------------------------------------------------------------
// READ IN THE DATA SET / SNAPSHOT SET & PREPROCESS
// ( this will be a separate abstract class type )
// ---------------------------------------------------------------
//
Teuchos::RCP<std::vector<std::string> > filenames = RBGen::genFileList( *BasisParams );
Teuchos::RCP<Teuchos::Time> timerSnapshotIn = Teuchos::rcp( new Teuchos::Time("Reading in Snapshot Set") );
timersRBGen.push_back( timerSnapshotIn );
//
Teuchos::RCP<Epetra_MultiVector> testMV;
{
Teuchos::TimeMonitor lcltimer( *timerSnapshotIn );
testMV = mvFileIO->Read( *filenames );
}
RBGen::EpetraMVPreprocessorFactory preprocess_factory;
Teuchos::RCP<Teuchos::Time> timerCreatePreprocessor = Teuchos::rcp( new Teuchos::Time("Create Preprocessor") );
timersRBGen.push_back( timerCreatePreprocessor );
Teuchos::RCP<RBGen::Preprocessor<Epetra_MultiVector> > prep;
{
Teuchos::TimeMonitor lcltimer( *timerCreatePreprocessor );
prep = preprocess_factory.create( *BasisParams );
//
// Initialize preprocessor.
//
prep->Initialize( BasisParams, mvFileIO );
}
Teuchos::RCP<Teuchos::Time> timerPreprocess = Teuchos::rcp( new Teuchos::Time("Preprocess Snapshot Set") );
timersRBGen.push_back( timerPreprocess );
{
Teuchos::TimeMonitor lcltimer( *timerPreprocess );
prep->Preprocess( testMV );
}
if (verbose && Comm.MyPID() == 0)
{
std::cout<<"-------------------------------------------------------"<<std::endl;
std::cout<<"Snapshot Set Imported and Preprocessed"<<std::endl;
std::cout<<"-------------------------------------------------------"<<std::endl;
}
//
// ---------------------------------------------------------------
// COMPUTE THE REDUCED BASIS
// ---------------------------------------------------------------
//
// - First create the abstract factory for the reduced basis methods.
//
RBGen::EpetraMVMethodFactory mthd_factory;
//
// - Then use the abstract factory to create the method specified in the parameter list.
//
Teuchos::RCP<Teuchos::Time> timerCreateMethod = Teuchos::rcp( new Teuchos::Time("Create Reduced Basis Method") );
timersRBGen.push_back( timerCreateMethod );
Teuchos::RCP<RBGen::Method<Epetra_MultiVector,Epetra_Operator> > method;
{
Teuchos::TimeMonitor lcltimer( *timerCreateMethod );
method = mthd_factory.create( *BasisParams );
//
// Initialize reduced basis method.
//
method->Initialize( BasisParams, testMV, opFileIO );
}
//
// - Call the computeBasis method on the reduced basis method object.
//
Teuchos::RCP<Teuchos::Time> timerComputeBasis = Teuchos::rcp( new Teuchos::Time("Reduced Basis Computation") );
timersRBGen.push_back( timerComputeBasis );
{
Teuchos::TimeMonitor lcltimer( *timerComputeBasis );
method->computeBasis();
}
//
// - Retrieve the computed basis from the method object.
//
Teuchos::RCP<const Epetra_MultiVector> basisMV = method->getBasis();
//
// Since we're using a POD method, we can dynamic cast to get the singular values.
//
Teuchos::RCP<RBGen::PODMethod<double> > pod_method = Teuchos::rcp_dynamic_cast<RBGen::PODMethod<double> >( method );
const std::vector<double> sv = pod_method->getSingularValues();
//
if (verbose && Comm.MyPID() == 0) {
std::cout<<"-------------------------------------------------------"<<std::endl;
std::cout<<"Computed Singular Values : "<<std::endl;
std::cout<<"-------------------------------------------------------"<<std::endl;
for (unsigned int i=0; i<sv.size(); ++i) { std::cout << sv[i] << std::endl; }
}
if (Comm.MyPID() == 0) {
std::cout<<"-------------------------------------------------------"<<std::endl;
std::cout<<"RBGen Computation Time Breakdown (seconds) : "<<std::endl;
std::cout<<"-------------------------------------------------------"<<std::endl;
for (unsigned int i=0; i<timersRBGen.size(); ++i)
std::cout << std::left << std::setw(40) << timersRBGen[i]->name() << " : "
<< std::setw(15) << timersRBGen[i]->totalElapsedTime() << std::endl;
std::cout<<"-------------------------------------------------------"<<std::endl;
}
//
// ---------------------------------------------------------------
// POSTPROCESS BASIS (not necessary right now)
// ---------------------------------------------------------------
//
//
// ---------------------------------------------------------------
// WRITE OUT THE REDUCED BASIS
// ---------------------------------------------------------------
//
if ( BasisParams->isSublist( "File IO" ) ) {
Teuchos::ParameterList fileio_params = BasisParams->sublist( "File IO" );
if ( fileio_params.isParameter( "Reduced Basis Output File" ) ) {
std::string outfile = Teuchos::getParameter<std::string>( fileio_params, "Reduced Basis Output File" );
mvFileIO->Write( basisMV, outfile );
}
}
//
#ifdef EPETRA_MPI
// Finalize MPI
MPI_Finalize();
#endif
return 0;
}
int main(int argc, char *argv[])
{
// Initialize MPI
#ifdef HAVE_MPI
MPI_Init(&argc,&argv);
#endif
// Create a communicator for Epetra objects
#ifdef HAVE_MPI
Epetra_MpiComm Comm( MPI_COMM_WORLD );
#else
Epetra_SerialComm Comm;
#endif
// Get the process ID and the total number of processors
int MyPID = Comm.MyPID();
int NumProc = Comm.NumProc();
// Check verbosity level
bool verbose = false;
if (argc > 1)
if (argv[1][0]=='-' && argv[1][1]=='v')
verbose = true;
// Get the number of elements from the command line
int NumGlobalElements = 0;
if ((argc > 2) && (verbose))
NumGlobalElements = atoi(argv[2]) + 1;
else if ((argc > 1) && (!verbose))
NumGlobalElements = atoi(argv[1]) + 1;
else
NumGlobalElements = 101;
// The number of unknowns must be at least equal to the
// number of processors.
if (NumGlobalElements < NumProc) {
std::cout << "numGlobalBlocks = " << NumGlobalElements
<< " cannot be < number of processors = " << NumProc << std::endl;
std::cout << "Test failed!" << std::endl;
throw "NOX Error";
}
bool success = false;
try {
// Create the interface between NOX and the application
// This object is derived from NOX::Epetra::Interface
Teuchos::RCP<Interface> interface =
Teuchos::rcp(new Interface(NumGlobalElements, Comm));
// Set the PDE factor (for nonlinear forcing term). This could be specified
// via user input.
interface->setPDEfactor(1000.0);
// Begin Nonlinear Solver ************************************
// Create the top level parameter list
Teuchos::RCP<Teuchos::ParameterList> IfpackParamsPtr =
Teuchos::rcp(new Teuchos::ParameterList);
// Set the printing parameters in the "Printing" sublist
Teuchos::ParameterList printParams;
printParams.set("MyPID", MyPID);
printParams.set("Output Precision", 3);
printParams.set("Output Processor", 0);
if (verbose)
printParams.set("Output Information",
NOX::Utils::OuterIteration +
NOX::Utils::OuterIterationStatusTest +
NOX::Utils::InnerIteration +
NOX::Utils::LinearSolverDetails +
NOX::Utils::Parameters +
NOX::Utils::Details +
NOX::Utils::Warning +
NOX::Utils::Debug +
NOX::Utils::TestDetails +
NOX::Utils::Error);
else
printParams.set("Output Information", NOX::Utils::Error +
NOX::Utils::TestDetails);
// Create a print class for controlling output below
NOX::Utils p(printParams);
// *******************************
// Setup Test Objects
// *******************************
// Create Linear Objects
// Get the vector from the Problem
if (verbose)
p.out() << "Creating Vectors and Matrices" << std::endl;
Teuchos::RCP<Epetra_Vector> solution_vec =
interface->getSolution();
Teuchos::RCP<Epetra_Vector> rhs_vec =
Teuchos::rcp(new Epetra_Vector(*solution_vec));
Teuchos::RCP<Epetra_Vector> lhs_vec =
Teuchos::rcp(new Epetra_Vector(*solution_vec));
Teuchos::RCP<Epetra_CrsMatrix> jacobian_matrix =
interface->getJacobian();
if (verbose)
p.out() << "Evaluating F and J" << std::endl;
solution_vec->PutScalar(1.0);
interface->computeF(*solution_vec, *rhs_vec);
rhs_vec->Scale(-1.0);
interface->computeJacobian(*solution_vec, *jacobian_matrix);
double norm =0.0;
rhs_vec->Norm2(&norm);
if (verbose)
p.out() << "Step 0, ||F|| = " << norm << std::endl;
if (verbose)
p.out() << "Creating Ifpack preconditioner" << std::endl;
Ifpack Factory;
Teuchos::RCP<Ifpack_Preconditioner> PreconditionerPtr;
PreconditionerPtr = Teuchos::rcp(Factory.Create("ILU",
jacobian_matrix.get(),0));
Teuchos::ParameterList teuchosParams;
PreconditionerPtr->SetParameters(teuchosParams);
PreconditionerPtr->Initialize();
PreconditionerPtr->Compute();
if (verbose)
p.out() << "Creating Aztec Solver" << std::endl;
Teuchos::RCP<AztecOO> aztecSolverPtr = Teuchos::rcp(new AztecOO());
if (verbose)
aztecSolverPtr->SetAztecOption(AZ_output, AZ_last);
else
aztecSolverPtr->SetAztecOption(AZ_output, AZ_none);
// *******************************
// Reuse Test
// *******************************
if (verbose) {
p.out() << "**********************************************" << std::endl;
p.out() << "Testing Newton solve with prec reuse" << std::endl;
p.out() << "**********************************************" << std::endl;
}
int step_number = 0;
int max_steps = 20;
bool converged = false;
int total_linear_iterations = 0;
while (norm > 1.0e-8 && step_number < max_steps) {
step_number++;
if (verbose)
p.out() << "Step " << step_number << ", ||F|| = " << norm << std::endl;
aztecSolverPtr->SetUserMatrix(jacobian_matrix.get(), false);
aztecSolverPtr->SetPrecOperator(PreconditionerPtr.get());
aztecSolverPtr->SetRHS(rhs_vec.get());
aztecSolverPtr->SetLHS(lhs_vec.get());
aztecSolverPtr->Iterate(400, 1.0e-4);
solution_vec->Update(1.0, *lhs_vec, 1.0);
interface->computeF(*solution_vec, *rhs_vec);
rhs_vec->Scale(-1.0);
interface->computeJacobian(*solution_vec, *jacobian_matrix);
rhs_vec->Norm2(&norm);
total_linear_iterations += aztecSolverPtr->NumIters();
if (norm < 1.0e-8)
converged = true;
}
if (verbose) {
p.out() << "Final Step " << step_number << ", ||F|| = " << norm << std::endl;
if (converged)
p.out() << "Converged!!" << std::endl;
else
p.out() << "Failed!!" << std::endl;
}
// Tests
int status = 0; // Converged
if (verbose)
p.out() << "Total Number of Linear Iterations = "
<< total_linear_iterations << std::endl;
if (Comm.NumProc() == 1 && total_linear_iterations != 157)
status = 1;
if (!converged)
status = 2;
success = converged && status == 0;
// Summarize test results
if (success)
p.out() << "Test passed!" << std::endl;
else
p.out() << "Test failed!" << std::endl;
if (verbose)
p.out() << "Status = " << status << std::endl;
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(verbose, std::cerr, success);
#ifdef HAVE_MPI
MPI_Finalize();
#endif
return ( success ? EXIT_SUCCESS : EXIT_FAILURE );
}
int main(int argc, char *argv[]) {
using std::cout;
using std::endl;
int i;
#ifdef EPETRA_MPI
// Initialize MPI
MPI_Init(&argc,&argv);
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
int MyPID = Comm.MyPID();
// Number of dimension of the domain
int space_dim = 2;
// Size of each of the dimensions of the domain
std::vector<double> brick_dim( space_dim );
brick_dim[0] = 1.0;
brick_dim[1] = 1.0;
// Number of elements in each of the dimensions of the domain
std::vector<int> elements( space_dim );
elements[0] = 10;
elements[1] = 10;
// Create problem
Teuchos::RCP<ModalProblem> testCase = Teuchos::rcp( new ModeLaplace2DQ2(Comm, brick_dim[0], elements[0], brick_dim[1], elements[1]) );
// Get the stiffness and mass matrices
Teuchos::RCP<Epetra_CrsMatrix> K = Teuchos::rcp( const_cast<Epetra_CrsMatrix *>(testCase->getStiffness()), false );
Teuchos::RCP<Epetra_CrsMatrix> M = Teuchos::rcp( const_cast<Epetra_CrsMatrix *>(testCase->getMass()), false );
//
// ************Construct preconditioner*************
//
Teuchos::ParameterList ifpackList;
// allocates an IFPACK factory. No data is associated
// to this object (only method Create()).
Ifpack Factory;
// create the preconditioner. For valid PrecType values,
// please check the documentation
std::string PrecType = "ICT"; // incomplete Cholesky
int OverlapLevel = 0; // must be >= 0. If Comm.NumProc() == 1,
// it is ignored.
Teuchos::RCP<Ifpack_Preconditioner> Prec = Teuchos::rcp( Factory.Create(PrecType, &*K, OverlapLevel) );
assert(Prec != Teuchos::null);
// specify parameters for ICT
ifpackList.set("fact: drop tolerance", 1e-4);
ifpackList.set("fact: ict level-of-fill", 0.);
// the combine mode is on the following:
// "Add", "Zero", "Insert", "InsertAdd", "Average", "AbsMax"
// Their meaning is as defined in file Epetra_CombineMode.h
ifpackList.set("schwarz: combine mode", "Add");
// sets the parameters
IFPACK_CHK_ERR(Prec->SetParameters(ifpackList));
// initialize the preconditioner. At this point the matrix must
// have been FillComplete()'d, but actual values are ignored.
IFPACK_CHK_ERR(Prec->Initialize());
// Builds the preconditioners, by looking for the values of
// the matrix.
IFPACK_CHK_ERR(Prec->Compute());
//
//*******************************************************/
// Set up Belos Block CG operator for inner iteration
//*******************************************************/
//
int blockSize = 3; // block size used by linear solver and eigensolver [ not required to be the same ]
int maxits = K->NumGlobalRows(); // maximum number of iterations to run
//
// Create the Belos::LinearProblem
//
Teuchos::RCP<Belos::LinearProblem<double,Epetra_MultiVector,Epetra_Operator> >
My_LP = Teuchos::rcp( new Belos::LinearProblem<double,Epetra_MultiVector,Epetra_Operator>() );
My_LP->setOperator( K );
// Create the Belos preconditioned operator from the Ifpack preconditioner.
// NOTE: This is necessary because Belos expects an operator to apply the
// preconditioner with Apply() NOT ApplyInverse().
Teuchos::RCP<Epetra_Operator> belosPrec = Teuchos::rcp( new Epetra_InvOperator( Prec.get() ) );
My_LP->setLeftPrec( belosPrec );
//
// Create the ParameterList for the Belos Operator
//
Teuchos::RCP<Teuchos::ParameterList> My_List = Teuchos::rcp( new Teuchos::ParameterList() );
My_List->set( "Solver", "BlockCG" );
My_List->set( "Maximum Iterations", maxits );
My_List->set( "Block Size", 1 );
My_List->set( "Convergence Tolerance", 1e-12 );
//
// Create the Belos::EpetraOperator
//
Teuchos::RCP<Belos::EpetraOperator> BelosOp =
Teuchos::rcp( new Belos::EpetraOperator( My_LP, My_List ));
//
// ************************************
// Start the block Arnoldi iteration
// ************************************
//
// Variables used for the Block Arnoldi Method
//
double tol = 1.0e-8;
int nev = 10;
int numBlocks = 3*nev/blockSize;
int maxRestarts = 5;
//int step = 5;
std::string which = "LM";
int verbosity = Anasazi::Errors + Anasazi::Warnings + Anasazi::FinalSummary;
//
// Create parameter list to pass into solver
//
Teuchos::ParameterList MyPL;
MyPL.set( "Verbosity", verbosity );
MyPL.set( "Which", which );
MyPL.set( "Block Size", blockSize );
MyPL.set( "Num Blocks", numBlocks );
MyPL.set( "Maximum Restarts", maxRestarts );
MyPL.set( "Convergence Tolerance", tol );
//MyPL.set( "Step Size", step );
typedef Epetra_MultiVector MV;
typedef Epetra_Operator OP;
typedef Anasazi::MultiVecTraits<double, MV> MVT;
typedef Anasazi::OperatorTraits<double, MV, OP> OPT;
// Create an Epetra_MultiVector for an initial vector to start the solver.
// Note: This needs to have the same number of columns as the blocksize.
Teuchos::RCP<Epetra_MultiVector> ivec = Teuchos::rcp( new Epetra_MultiVector(K->Map(), blockSize) );
MVT::MvRandom( *ivec );
// Call the ctor that calls the petra ctor for a matrix
Teuchos::RCP<Anasazi::EpetraGenOp> Aop = Teuchos::rcp( new Anasazi::EpetraGenOp(BelosOp, M, false) );
Teuchos::RCP<Anasazi::BasicEigenproblem<double,MV,OP> > MyProblem =
Teuchos::rcp( new Anasazi::BasicEigenproblem<double,MV,OP>(Aop, M, ivec) );
// Inform the eigenproblem that the matrix pencil (K,M) is symmetric
MyProblem->setHermitian(true);
// Set the number of eigenvalues requested
MyProblem->setNEV( nev );
// Inform the eigenproblem that you are finished passing it information
bool boolret = MyProblem->setProblem();
if (boolret != true) {
if (MyPID == 0) {
cout << "Anasazi::BasicEigenproblem::setProblem() returned with error." << endl;
}
#ifdef HAVE_MPI
MPI_Finalize() ;
#endif
return -1;
}
// Initialize the Block Arnoldi solver
Anasazi::BlockKrylovSchurSolMgr<double, MV, OP> MySolverMgr(MyProblem, MyPL);
// Solve the problem to the specified tolerances or length
Anasazi::ReturnType returnCode = MySolverMgr.solve();
if (returnCode != Anasazi::Converged && MyPID==0) {
cout << "Anasazi::EigensolverMgr::solve() returned unconverged." << endl;
}
// Get the eigenvalues and eigenvectors from the eigenproblem
Anasazi::Eigensolution<double,MV> sol = MyProblem->getSolution();
std::vector<Anasazi::Value<double> > evals = sol.Evals;
Teuchos::RCP<MV> evecs = sol.Evecs;
int numev = sol.numVecs;
if (numev > 0) {
Teuchos::SerialDenseMatrix<int,double> dmatr(numev,numev);
Epetra_MultiVector tempvec(K->Map(), MVT::GetNumberVecs( *evecs ));
OPT::Apply( *K, *evecs, tempvec );
MVT::MvTransMv( 1.0, tempvec, *evecs, dmatr );
if (MyPID==0) {
double compeval = 0.0;
cout.setf(std::ios_base::right, std::ios_base::adjustfield);
cout<<"Actual Eigenvalues (obtained by Rayleigh quotient) : "<<endl;
cout<<"------------------------------------------------------"<<endl;
cout<<std::setw(16)<<"Real Part"
<<std::setw(16)<<"Rayleigh Error"<<endl;
cout<<"------------------------------------------------------"<<endl;
for (i=0; i<numev; i++) {
compeval = dmatr(i,i);
cout<<std::setw(16)<<compeval
<<std::setw(16)<<Teuchos::ScalarTraits<double>::magnitude(compeval-1.0/evals[i].realpart)
<<endl;
}
cout<<"------------------------------------------------------"<<endl;
}
}
#ifdef EPETRA_MPI
MPI_Finalize();
#endif
return 0;
}