adios_datablock * adios_transform_alacrity_pg_reqgroup_completed(adios_transform_read_request *reqgroup,
adios_transform_pg_read_request *completed_pg_reqgroup)
{
//uint64_t raw_size = (uint64_t)completed_pg_reqgroup->raw_var_length;
void* raw_buff = completed_pg_reqgroup->subreqs->data;
uint64_t orig_size = adios_get_type_size(reqgroup->transinfo->orig_type, "");
int d = 0;
for(d = 0; d < reqgroup->transinfo->orig_ndim; d++)
orig_size *= (uint64_t)(completed_pg_reqgroup->orig_varblock->count[d]);
void* orig_buff = malloc(orig_size);
ALPartitionData output_partition;
uint64_t numElements = 0;
// Decompress into output_partition from compressed_buf
memstream_t ms = memstreamInitReturn (raw_buff);
// Deserialize the ALPartitionData from memstream
ALDeserializePartitionData (&output_partition, &ms);
// Decode ALPartitionData into decompresed buffer
int rtn = ALDecode (&output_partition, orig_buff, &numElements);
if (ALErrorNone != rtn)
return NULL;
ALPartitionDataDestroy(&output_partition);
return adios_datablock_new(reqgroup->transinfo->orig_type,
completed_pg_reqgroup->timestep,
completed_pg_reqgroup->pg_bounds_sel,
orig_buff);
}
// Encodes the data from infile into the ALFileStore outfile, closing both afterward
int decodeCommandDecode(ALStore *infile, FILE *outfile) {
ALPartitionData partdata; // Output buffer
void *outbuf;
uint64_t outbufCount;
uint64_t totalElemsWritten = 0;
ALError err;
size_t writelen;
while (!ALStoreEOF(infile)) {
err = ALStoreReadPartition(infile, &partdata);
if (err != ALErrorNone) {
fprintf(stderr, "Error reading the next partition from the input files\n");
return 1;
}
outbuf = malloc(ALGetDecodeLength(&partdata));
if (!outbuf) {
fprintf(stderr, "Error allocating %llu btyes of temporary memory for decoding\n", ALGetDecodeLength(&partdata));
return 1;
}
err = ALDecode(&partdata, outbuf, &outbufCount);
if (err != ALErrorNone) {
fprintf(stderr, "Error decoding partition from input files\n");
return 1;
}
writelen = fwrite(outbuf, partdata.metadata.elementSize, outbufCount, outfile);
if (writelen != outbufCount) {
fprintf(stderr, "Error writing decoded elements to file (wrote %llu, expected to write %llu)\n",
(uint64_t)writelen, (uint64_t)partdata.metadata.elementSize);
return 1;
}
totalElemsWritten += outbufCount;
free(outbuf);
ALPartitionDataDestroy(&partdata);
}
// Cleanup
fclose(outfile);
printf("Decoding complete, wrote out %llu elements\n", totalElemsWritten);
dbprintf("Closing ALACRITY input files...\n");
if (ALStoreClose(infile) != ALErrorNone) {
fprintf(stderr, "Error closing ALACRITY input file, aborting (output should still be correct)\n");
return 1;
}
return 0;
}
