int main ()
{
BEGIN_TESTS(0);
test_basic::test<stdcxx::json_t>();
test_iterator::test<stdcxx::json_t>();
test_reference_wrapper::test<stdcxx::json_t>();
test_parse::test<stdcxx::json_t>();
test_stringify::test<stdcxx::json_t>();
test_pretty_printer::test<stdcxx::json_t>();
test_serialize::test<stdcxx::json_t>();
test_rpc::test<stdcxx::json_t>();
// #ifdef HAVE_QT_CORE
// std::cout << "===== HAVE_QT_CORE =====" << std::endl;
// test_basic::test<qt::json>();
// test_iterator::test<qt::json>();
// test_reference_wrapper::test<qt::json>();
// test_parse::test<qt::json>();
// test_stringify::test<qt::json>();
// test_pretty_printer::test<qt::json>();
// test_serialize::test<qt::json>();
// #endif
return END_TESTS;
}
int main(int argc, char **argv)
{
BEGIN_TESTS();
struct core_buffered_reader reader;
char file[] = "/home/boisvert/dropbox/SRS213780-Ecoli/SRR306102_1.fastq.gz";
char buffer[BUFFER_SIZE];
int expected;
int actual;
expected = 17222992;
core_buffered_reader_init(&reader, file, 0);
actual = 0;
while (core_buffered_reader_read_line(&reader, buffer, BUFFER_SIZE) > 0) {
++actual;
/*
printf("Line= %s\n", buffer);
*/
}
TEST_INT_EQUALS(actual, expected);
core_buffered_reader_destroy(&reader);
END_TESTS();
return 0;
}
int main ()
{
BEGIN_TESTS(0);
test_constructor();
test_compare();
test_timezone();
return END_TESTS;
}
int main ()
{
BEGIN_TESTS(0);
test_constructors();
test_assignments();
test_access();
test_iterators();
test_capacity();
test_operations();
test_search();
return END_TESTS;
}
int main(int argc, char **argv)
{
BEGIN_TESTS();
{
struct core_memory_pool memory;
core_memory_pool_init(&memory, 16777216, -1);
test_allocator(&memory);
core_memory_pool_disable_tracking(&memory);
test_allocator(&memory);
test_allocator(NULL);
core_memory_pool_destroy(&memory);
}
END_TESTS();
return 0;
}
int main(int argc, char **argv)
{
BEGIN_TESTS();
struct core_fast_ring ring;
int capacity = 64;
int i;
int value;
int elements;
elements = 0;
#if 0
printf("Required %d\n", capacity);
#endif
core_fast_ring_init(&ring, capacity, sizeof(int));
capacity = core_fast_ring_capacity(&ring);
#if 0
printf("Provided %d\n", capacity);
#endif
TEST_BOOLEAN_EQUALS(core_fast_ring_is_empty_from_consumer(&ring), 1);
for (i = 0; i < capacity; i++) {
TEST_BOOLEAN_EQUALS(core_fast_ring_push_from_producer(&ring, &i), 1);
elements++;
TEST_INT_EQUALS(core_fast_ring_size_from_producer(&ring), elements);
TEST_INT_EQUALS(core_fast_ring_size_from_consumer(&ring), elements);
}
TEST_BOOLEAN_EQUALS(core_fast_ring_is_full_from_producer(&ring), 1);
for (i = 0; i < capacity; i++) {
TEST_BOOLEAN_EQUALS(core_fast_ring_pop_from_consumer(&ring, &value), 1);
elements--;
TEST_INT_EQUALS(value, i);
TEST_INT_EQUALS(core_fast_ring_size_from_producer(&ring), elements);
TEST_INT_EQUALS(core_fast_ring_size_from_consumer(&ring), elements);
}
core_fast_ring_destroy(&ring);
{
struct core_fast_ring ring;
int capacity = 64;
struct thorium_message message;
int action;
int count;
void *buffer;
int inserted;
int pulled;
action = 1234;
count = 0;
buffer = NULL;
thorium_message_init(&message, action, count, buffer);
core_fast_ring_init(&ring, capacity, sizeof(struct thorium_message));
core_fast_ring_use_multiple_producers(&ring);
inserted = 0;
while (core_fast_ring_push_from_producer(&ring, &message)) {
++inserted;
}
/*
* 64 + 1 = 65, 128 is the next power of 2 for the mask.
*/
/*
TEST_INT_EQUALS(inserted, capacity);
*/
pulled = 0;
while (core_fast_ring_pop_from_consumer(&ring, &message)) {
++pulled;
}
TEST_INT_EQUALS(inserted, pulled);
core_fast_ring_destroy(&ring);
thorium_message_destroy(&message);
}
END_TESTS();
return 0;
}
int main(int argc, char **argv)
{
BEGIN_TESTS();
{
/* test when inserting more than array size */
struct core_queue queue;
int i;
core_queue_init(&queue, sizeof(int));
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
i = 16;
while (i--) {
TEST_INT_EQUALS(core_queue_enqueue(&queue, &i), 1);
}
i = 16;
while (i--) {
TEST_INT_EQUALS(core_queue_enqueue(&queue, &i), 1);
}
TEST_INT_EQUALS(core_queue_full(&queue), 0);
i = 16;
while (i--) {
int item;
TEST_INT_EQUALS(core_queue_dequeue(&queue, &item), 1);
}
i = 16;
while (i--) {
int item;
TEST_INT_EQUALS(core_queue_dequeue(&queue, &item), 1);
}
core_queue_destroy(&queue);
}
{
/* push 1000 elements, and verify them after */
struct core_queue queue;
int i;
core_queue_init(&queue, sizeof(int));
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
i = 1000;
while (i--) {
TEST_INT_EQUALS(core_queue_enqueue(&queue, &i), 1);
}
TEST_INT_EQUALS(core_queue_full(&queue), 0);
i = 1000;
while (i--) {
int item;
TEST_INT_EQUALS(core_queue_dequeue(&queue, &item), 1);
TEST_INT_EQUALS(item, i);
/* printf("%i %i\n", item, i); */
}
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
core_queue_destroy(&queue);
}
{
/* use array size of 1 and 2000 elements */
struct core_queue queue;
int i;
core_queue_init(&queue, sizeof(int));
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
i = 2000;
while (i--) {
TEST_INT_EQUALS(core_queue_enqueue(&queue, &i), 1);
}
TEST_INT_EQUALS(core_queue_full(&queue), 0);
i = 2000;
while (i--) {
int item;
TEST_INT_EQUALS(core_queue_dequeue(&queue, &item), 1);
TEST_INT_EQUALS(item, i);
/* printf("%i %i\n", item, i); */
}
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
core_queue_destroy(&queue);
}
{
/* stress test the code by inserting one element,
and then removing. */
struct core_queue queue;
int i;
int expected;
core_queue_init(&queue, sizeof(int));
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
i = 3000;
while (i--) {
expected = i;
TEST_INT_EQUALS(core_queue_enqueue(&queue, &i), 1);
TEST_INT_EQUALS(core_queue_dequeue(&queue, &i), 1);
TEST_INT_EQUALS(i, expected);
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
TEST_INT_EQUALS(core_queue_enqueue(&queue, &i), 1);
TEST_INT_EQUALS(core_queue_dequeue(&queue, &i), 1);
TEST_INT_EQUALS(i, expected);
}
TEST_INT_EQUALS(core_queue_full(&queue), 0);
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
/*
* At any time, there is 0 or 1 elements in the queue.
*/
/*
core_queue_print(&queue);
*/
TEST_INT_IS_LOWER_THAN(core_queue_capacity(&queue), 100);
core_queue_destroy(&queue);
}
{
struct core_queue queue;
int i;
int value;
core_queue_init(&queue, sizeof(int));
#if 0
printf("Test 3\n");
#endif
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
i = 3000;
while (i--) {
value = i;
TEST_INT_EQUALS(core_queue_enqueue(&queue, &value), 1);
TEST_INT_EQUALS(core_queue_enqueue(&queue, &value), 1);
TEST_INT_EQUALS(core_queue_dequeue(&queue, &value), 1);
}
#if 0
printf("Test 3, size %d\n",
core_queue_size(&queue));
#endif
core_queue_destroy(&queue);
}
{
struct core_queue queue;
int i;
int value;
core_queue_init(&queue, sizeof(int));
#if 0
printf("Test 4\n");
#endif
TEST_INT_EQUALS(core_queue_empty(&queue), 1);
i = 3000000;
while (i--) {
value = i;
TEST_INT_EQUALS(core_queue_enqueue(&queue, &value), 1);
TEST_INT_EQUALS(core_queue_enqueue(&queue, &value), 1);
TEST_INT_EQUALS(core_queue_dequeue(&queue, &value), 1);
TEST_INT_EQUALS(core_queue_dequeue(&queue, &value), 1);
}
#if 0
printf("Test 4, size %d\n",
core_queue_size(&queue));
#endif
core_queue_destroy(&queue);
}
END_TESTS();
return 0;
}
int main(int argc, char **argv)
{
BEGIN_TESTS();
{
struct core_map big_map;
int kmer_length = 43;
struct biosal_dna_kmer kmer;
int count;
int run_test;
int coverage;
void *key;
int key_length;
int *bucket;
int i;
struct biosal_dna_codec codec;
struct core_memory_pool memory;
core_memory_pool_init(&memory, 1048576, -1);
biosal_dna_codec_init(&codec);
run_test = 1;
count = 100000000;
printf("STRESS TEST\n");
biosal_dna_kmer_init_mock(&kmer, kmer_length, &codec, &memory);
key_length = biosal_dna_kmer_pack_size(&kmer, kmer_length, &codec);
biosal_dna_kmer_destroy(&kmer, &memory);
core_map_init(&big_map, key_length, sizeof(coverage));
key = core_memory_allocate(key_length, -1);
i = 0;
while (i < count && run_test) {
biosal_dna_kmer_init_random(&kmer, kmer_length, &codec, &memory);
biosal_dna_kmer_pack_store_key(&kmer, key, kmer_length, &codec, &memory);
bucket = core_map_add(&big_map, key);
coverage = 99;
(*bucket) = coverage;
biosal_dna_kmer_destroy(&kmer, &memory);
if (i % 100000 == 0) {
printf("ADD %d/%d %" PRIu64 "\n", i, count,
core_map_size(&big_map));
}
i++;
}
core_map_destroy(&big_map);
core_memory_free(key, -1);
biosal_dna_codec_destroy(&codec);
core_memory_pool_destroy(&memory);
}
END_TESTS();
return 0;
}
int main(int argc, char **argv)
{
struct biosal_assembly_vertex vertex;
int i;
int has_c;
int has_g;
int has_t;
int count;
int code;
BEGIN_TESTS();
biosal_assembly_vertex_init(&vertex);
TEST_INT_EQUALS(biosal_assembly_vertex_parent_count(&vertex), 0);
TEST_INT_EQUALS(biosal_assembly_vertex_child_count(&vertex), 0);
/*
* Add some links
*/
biosal_assembly_vertex_add_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_G);
biosal_assembly_vertex_add_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_C);
biosal_assembly_vertex_add_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_T);
TEST_INT_EQUALS(biosal_assembly_vertex_parent_count(&vertex), 0);
TEST_INT_EQUALS(biosal_assembly_vertex_child_count(&vertex), 3);
has_g = 0;
has_c = 0;
has_t = 0;
count = biosal_assembly_vertex_child_count(&vertex);
for (i = 0; i < count; i++) {
code = biosal_assembly_vertex_get_child(&vertex, i);
if (code == BIOSAL_NUCLEOTIDE_CODE_G) {
has_g = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_C) {
has_c = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_T) {
has_t = 1;
}
}
TEST_INT_EQUALS(has_t, 1);
TEST_INT_EQUALS(has_g, 1);
TEST_INT_EQUALS(has_c, 1);
biosal_assembly_vertex_delete_child(&vertex, BIOSAL_NUCLEOTIDE_CODE_C);
has_g = 0;
has_c = 0;
has_t = 0;
count = biosal_assembly_vertex_child_count(&vertex);
for (i = 0; i < count; i++) {
code = biosal_assembly_vertex_get_child(&vertex, i);
if (code == BIOSAL_NUCLEOTIDE_CODE_G) {
has_g = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_C) {
has_c = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_T) {
has_t = 1;
}
}
TEST_INT_EQUALS(has_t, 1);
TEST_INT_EQUALS(has_g, 1);
TEST_INT_EQUALS(has_c, 0);
code = biosal_assembly_vertex_get_parent(&vertex, 0);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_A);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_C);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_G);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_T);
code = biosal_assembly_vertex_get_child(&vertex, 99);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_A);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_C);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_G);
TEST_INT_NOT_EQUALS(code, BIOSAL_NUCLEOTIDE_CODE_T);
biosal_assembly_vertex_add_parent(&vertex, BIOSAL_NUCLEOTIDE_CODE_G);
TEST_INT_EQUALS(biosal_assembly_vertex_parent_count(&vertex), 1);
has_g = 0;
has_c = 0;
has_t = 0;
count = biosal_assembly_vertex_parent_count(&vertex);
for (i = 0; i < count; i++) {
code = biosal_assembly_vertex_get_parent(&vertex, i);
if (code == BIOSAL_NUCLEOTIDE_CODE_G) {
has_g = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_C) {
has_c = 1;
}
if (code == BIOSAL_NUCLEOTIDE_CODE_T) {
has_t = 1;
}
}
TEST_INT_EQUALS(has_t, 0);
TEST_INT_EQUALS(has_g, 1);
TEST_INT_EQUALS(has_c, 0);
biosal_assembly_vertex_destroy(&vertex);
END_TESTS();
return 0;
}
int main(int argc, char **argv)
{
BEGIN_TESTS();
{
struct core_dynamic_hash_table table;
uint64_t i;
uint64_t elements;
elements = 900;
core_dynamic_hash_table_init(&table, 1140, sizeof(int), 0);
for (i = 0; i < elements; i++) {
/*
printf("insert %d\n", i);
printf("before actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i);
core_dynamic_hash_table_add(&table, &i);
/*
printf("after1 actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i + 1);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
/*
printf("after2 actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i + 1);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
/*
printf("after3 actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i + 1);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
/*
printf("after4 actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i + 1);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
/*
printf("after5 actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i + 1);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
/*
printf("after6 actual %d expected %d\n", (int)core_dynamic_hash_table_size(&table), i + 1);
*/
}
core_dynamic_hash_table_destroy(&table);
}
{
struct core_dynamic_hash_table table;
struct core_dynamic_hash_table_iterator iterator;
int key_size;
int value_size;
uint64_t buckets;
uint64_t i;
int j;
uint64_t inserted;
int key;
int *key_bucket;
int *value_bucket;
int found;
key_size = sizeof(int);
value_size = sizeof(int);
buckets = 4;
inserted = 0;
core_dynamic_hash_table_init(&table, buckets, key_size, value_size);
for (i = 0; i < buckets; i++) {
key = inserted;
value_bucket = core_dynamic_hash_table_add(&table, &key);
inserted++;
TEST_POINTER_NOT_EQUALS(value_bucket, NULL);
*value_bucket = i;
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), inserted);
value_bucket = core_dynamic_hash_table_get(&table, &key);
TEST_POINTER_NOT_EQUALS(value_bucket, NULL);
}
key = inserted;
value_bucket = core_dynamic_hash_table_add(&table, &key);
inserted++;
for (j = 0; j < 1000; j++) {
for (i = 0; i < buckets; i++) {
key = inserted;
value_bucket = core_dynamic_hash_table_add(&table, &key);
inserted++;
TEST_POINTER_NOT_EQUALS(value_bucket, NULL);
*value_bucket = i;
/*
printf("DEBUG actual %d expected %d\n",
(int)core_dynamic_hash_table_size(&table), inserted);
*/
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), inserted);
value_bucket = core_dynamic_hash_table_get(&table, &key);
TEST_POINTER_NOT_EQUALS(value_bucket, NULL);
}
}
key = 9999;
value_bucket = core_dynamic_hash_table_add(&table, &key);
*value_bucket = 8888;
core_dynamic_hash_table_iterator_init(&iterator, &table);
i = 0;
found = 0;
while (core_dynamic_hash_table_iterator_has_next(&iterator)) {
core_dynamic_hash_table_iterator_next(&iterator, (void **)&key_bucket,
(void **)&value_bucket);
if (*key_bucket == 9999 && *value_bucket == 8888) {
found = 1;
}
i++;
}
TEST_UINT64_T_EQUALS(i, core_dynamic_hash_table_size(&table));
TEST_INT_EQUALS(found, 1);
core_dynamic_hash_table_iterator_destroy(&iterator);
core_dynamic_hash_table_destroy(&table);
}
{
struct core_dynamic_hash_table table;
int key;
int *value;
/*
printf("-------------------\n");
printf("DEBUG TEST-alpha-89\n");
*/
core_dynamic_hash_table_init(&table, 8, sizeof(int), sizeof(int));
for (key = 0; key < 1000000; key++) {
/*
printf("DEBUG key %d\n", key);
*/
core_dynamic_hash_table_add(&table, &key);
value = (int *)core_dynamic_hash_table_get(&table, &key);
TEST_POINTER_NOT_EQUALS(value, NULL);
*value = key;
}
core_dynamic_hash_table_destroy(&table);
}
{
struct core_dynamic_hash_table table;
uint64_t i;
core_dynamic_hash_table_init(&table, 2, sizeof(int), sizeof(int));
for (i = 0; i < 999; i++) {
core_dynamic_hash_table_add(&table, &i);
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
}
core_dynamic_hash_table_destroy(&table);
}
{
struct core_dynamic_hash_table table;
uint64_t i;
void *bucket;
core_dynamic_hash_table_init(&table, 2, sizeof(int), 128);
for (i = 0; i < 999; i++) {
core_dynamic_hash_table_add(&table, &i);
TEST_UINT64_T_EQUALS(core_dynamic_hash_table_size(&table), i + 1);
}
for (i = 0; i < 999; i++) {
bucket = core_dynamic_hash_table_get(&table, &i);
TEST_POINTER_NOT_EQUALS(bucket, NULL);
}
core_dynamic_hash_table_destroy(&table);
}
END_TESTS();
return 0;
}
