/// Set up initial conditions
void SWIBC::initializeBdry(LevelData<FArrayBox>& a_B)
{
const Real tmpVal = 0.0;
const Real tmpVal2 = 100;
for (DataIterator dit = a_B.dataIterator(); dit.ok(); ++dit)
{
// Storage for current grid
FArrayBox& B = a_B[dit()];
// Box of current grid
Box bBox = B.box();
bBox &= m_domain;
// Set up initial condition in this grid
FORT_LINELASTSETFAB(CHF_FRA1(B,4),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,5),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,6),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal2));
}
}
void
EBPoissonOp::
applyOpRegularAllDirs(Box * a_loBox,
Box * a_hiBox,
int * a_hasLo,
int * a_hasHi,
Box & a_curDblBox,
Box & a_curPhiBox,
int a_nComps,
BaseFab<Real> & a_curOpPhiFAB,
const BaseFab<Real> & a_curPhiFAB,
bool a_homogeneousPhysBC,
const DataIndex& a_dit,
const Real& a_beta)
{
CH_TIME("EBPoissonOp::applyOpRegularAllDirs");
CH_assert(m_domainBC != NULL);
//need to monkey with the ghost cells to account for boundary conditions
BaseFab<Real>& phiFAB = (BaseFab<Real>&) a_curPhiFAB;
applyDomainFlux(a_loBox, a_hiBox, a_hasLo, a_hasHi,
a_curDblBox, a_nComps, phiFAB,
a_homogeneousPhysBC, a_dit,m_beta);
for (int comp = 0; comp<a_nComps; comp++)
{
FORT_REGGET1DLAPLACIAN_INPLACE(CHF_FRA1(a_curOpPhiFAB,comp),
CHF_CONST_FRA1(a_curPhiFAB,comp),
CHF_CONST_REAL(a_beta),
CHF_CONST_REALVECT(m_dx),
CHF_BOX(a_curDblBox));
}
}
void CellToEdge(const FArrayBox& a_cellData,
FluxBox& a_edgeData)
{
// loop over components -- assumption is that in cell-centered
// data, direction changes faster than component
int cellcomp;
for (int comp = 0; comp < a_edgeData.nComp(); comp++)
{
// loop over directions
for (int dir = 0; dir < SpaceDim; dir++)
{
// define faces over which we can do averaging
Box edgeBox = surroundingNodes(a_cellData.box(), dir);
edgeBox.grow(dir,-1);
edgeBox &= a_edgeData[dir].box();
if (a_cellData.nComp() == a_edgeData.nComp())
{
// straightforward cell->edge averaging
cellcomp = comp;
}
else
{
// each cell comp represents a different spatial direction
cellcomp = SpaceDim*comp + dir;
}
FORT_CELLTOEDGE(CHF_CONST_FRA1(a_cellData, cellcomp),
CHF_FRA1(a_edgeData[dir], comp),
CHF_BOX(edgeBox),
CHF_CONST_INT(dir));
}
}
}
// ------------------------------------------------------------
void CellToEdge(const FArrayBox& a_cellData, FArrayBox& a_edgeData,
const int a_dir)
{
Box edgeBox = surroundingNodes(a_cellData.box(), a_dir);
edgeBox.grow(a_dir,-1);
edgeBox &= a_edgeData.box();
int cellComp;
for (int comp = 0; comp < a_edgeData.nComp(); comp++)
{
if (a_cellData.nComp() == a_edgeData.nComp())
{
// straightforward cell->edge averaging
cellComp = comp;
}
else
{
// each cell comp represents a different spatial direction
cellComp = SpaceDim*comp + a_dir;
}
FORT_CELLTOEDGE(CHF_CONST_FRA1(a_cellData, cellComp),
CHF_FRA1(a_edgeData, comp),
CHF_BOX(edgeBox),
CHF_CONST_INT(a_dir));
}
}
void
EBMGAverage::averageFAB(EBCellFAB& a_coar,
const Box& a_boxCoar,
const EBCellFAB& a_refCoar,
const DataIndex& a_datInd,
const Interval& a_variables) const
{
CH_TIMERS("EBMGAverage::average");
CH_TIMER("regular_average", t1);
CH_TIMER("irregular_average", t2);
CH_assert(isDefined());
const Box& coarBox = a_boxCoar;
//do all cells as if they were regular
Box refBox(IntVect::Zero, IntVect::Zero);
refBox.refine(m_refRat);
int numFinePerCoar = refBox.numPts();
BaseFab<Real>& coarRegFAB = a_coar.getSingleValuedFAB();
const BaseFab<Real>& refCoarRegFAB = a_refCoar.getSingleValuedFAB();
//set to zero because the fortran is a bit simpleminded
//and does stuff additively
a_coar.setVal(0.);
CH_START(t1);
for (int comp = a_variables.begin(); comp <= a_variables.end(); comp++)
{
FORT_REGAVERAGE(CHF_FRA1(coarRegFAB,comp),
CHF_CONST_FRA1(refCoarRegFAB,comp),
CHF_BOX(coarBox),
CHF_BOX(refBox),
CHF_CONST_INT(numFinePerCoar),
CHF_CONST_INT(m_refRat));
}
CH_STOP(t1);
//this is really volume-weighted averaging even though it does
//not look that way.
//so (in the traditional sense) we want to preserve
//rhoc * volc = sum(rhof * volf)
//this translates to
//volfrac_C * rhoC = (1/numFinePerCoar)(sum(volFrac_F * rhoF))
//but the data input to this routine is all kappa weigthed so
//the volumefractions have already been multiplied
//which means
// rhoC = (1/numFinePerCoar)(sum(rhoF))
//which is what this does
CH_START(t2);
for (int comp = a_variables.begin(); comp <= a_variables.end(); comp++)
{
m_averageEBStencil[a_datInd]->apply(a_coar, a_refCoar, false, comp);
}
CH_STOP(t2);
}
void EdgeToCell(const FluxBox& a_edgeData, const int a_edgeComp,
FArrayBox& a_cellData, const int a_cellComp,
const Box& a_cellBox, const int a_dir)
{
FORT_EDGETOCELL(CHF_CONST_FRA1(a_edgeData[a_dir],a_edgeComp),
CHF_FRA1(a_cellData, a_cellComp),
CHF_BOX(a_cellBox),
CHF_CONST_INT(a_dir));
}
void EdgeToCellMax(const FluxBox& a_edgeData, const int a_edgeComp,
FArrayBox& a_cellData, const int a_cellComp,
const int a_dir)
{
const Box& cellBox = a_cellData.box();
FORT_EDGETOCELLMAX(CHF_CONST_FRA1(a_edgeData[a_dir],a_edgeComp),
CHF_FRA1(a_cellData, a_cellComp),
CHF_BOX(cellBox),
CHF_CONST_INT(a_dir));
}
void EBPoissonOp::
GSColorAllRegular(LevelData<EBCellFAB>& a_phi,
const LevelData<EBCellFAB>& a_rhs,
const IntVect& a_color,
const Real& a_weight,
const bool& a_homogeneousPhysBC)
{
CH_TIME("EBPoissonOp::GSColorAllRegular");
CH_assert(a_rhs.ghostVect() == m_ghostCellsRHS);
CH_assert(a_phi.ghostVect() == m_ghostCellsPhi);
int nComps = a_phi.nComp();
for (DataIterator dit = a_phi.dataIterator(); dit.ok(); ++dit)
{
Box dblBox(m_eblg.getDBL().get(dit()));
BaseFab<Real>& phiFAB = (a_phi[dit()] ).getSingleValuedFAB();
const BaseFab<Real>& rhsFAB = (a_rhs[dit()] ).getSingleValuedFAB();
Box loBox[SpaceDim],hiBox[SpaceDim];
int hasLo[SpaceDim],hasHi[SpaceDim];
applyDomainFlux(loBox, hiBox, hasLo, hasHi,
dblBox, nComps, phiFAB,
a_homogeneousPhysBC, dit(),m_beta);
IntVect loIV = dblBox.smallEnd();
IntVect hiIV = dblBox.bigEnd();
for (int idir = 0; idir < SpaceDim; idir++)
{
if (loIV[idir] % 2 != a_color[idir])
{
loIV[idir]++;
}
}
if (loIV <= hiIV)
{
Box coloredBox(loIV, hiIV);
for (int comp=0; comp<a_phi.nComp(); comp++)
{
FORT_DOALLREGULARMULTICOLOR(CHF_FRA1(phiFAB,comp),
CHF_CONST_FRA1(rhsFAB,comp),
CHF_CONST_REAL(a_weight),
CHF_CONST_REAL(m_alpha),
CHF_CONST_REAL(m_beta),
CHF_CONST_REALVECT(m_dx),
CHF_BOX(coloredBox));
}
}
}
}
// Set up initial conditions
void AdvectTestIBC::initialize(LevelData<FArrayBox>& a_U)
{
DisjointBoxLayout grids = a_U.disjointBoxLayout();
for (DataIterator dit = grids.dataIterator(); dit.ok(); ++dit)
{
const Box& grid = grids.get(dit());
FORT_ADVECTINITF(CHF_FRA1(a_U[dit()],0),
CHF_CONST_REALVECT(m_center),
CHF_CONST_REAL(m_size),
CHF_CONST_REAL(m_dx),
CHF_BOX(grid));
}
}
// ---------------------------------------------------------
void
AMRNavierStokes::computeKineticEnergy(LevelData<FArrayBox>& a_energy) const
{
// this is simple since no BC's need to be set.
const LevelData<FArrayBox>& levelVel = *m_vel_new_ptr;
const DisjointBoxLayout& levelGrids = levelVel.getBoxes();
DataIterator dit = a_energy.dataIterator();
for (dit.begin(); dit.ok(); ++dit)
{
FORT_KINETICENERGY(CHF_FRA1(a_energy[dit],0),
CHF_CONST_FRA(levelVel[dit]),
CHF_BOX(levelGrids[dit]));
}
}
// ------------------------------------------------------------
void CellToEdge(const FArrayBox& a_cellData, const int a_cellComp,
FArrayBox& a_edgeData, const int a_edgeComp,
const int a_dir)
{
Box edgeBox = surroundingNodes(a_cellData.box(),a_dir);
edgeBox.grow(a_dir, -1);
edgeBox &= a_edgeData.box();
FORT_CELLTOEDGE(CHF_CONST_FRA1(a_cellData,a_cellComp),
CHF_FRA1(a_edgeData,a_edgeComp),
CHF_BOX(edgeBox),
CHF_CONST_INT(a_dir));
}
void
EBMGInterp::pwcInterpFAB(EBCellFAB& a_refCoar,
const Box& a_coarBox,
const EBCellFAB& a_coar,
const DataIndex& a_datInd,
const Interval& a_variables) const
{
CH_TIMERS("EBMGInterp::interp");
CH_TIMER("regular_interp", t1);
CH_TIMER("irregular_interp", t2);
CH_assert(isDefined());
const Box& coarBox = a_coarBox;
for (int ivar = a_variables.begin(); ivar <= a_variables.end(); ivar++)
{
m_interpEBStencil[a_datInd]->cache(a_refCoar, ivar);
//do all cells as if they were regular
Box refBox(IntVect::Zero, IntVect::Zero);
refBox.refine(m_refRat);
const BaseFab<Real>& coarRegFAB = a_coar.getSingleValuedFAB();
BaseFab<Real>& refCoarRegFAB = a_refCoar.getSingleValuedFAB();
CH_START(t1);
FORT_REGPROLONG(CHF_FRA1(refCoarRegFAB,ivar),
CHF_CONST_FRA1(coarRegFAB,ivar),
CHF_BOX(coarBox),
CHF_BOX(refBox),
CHF_CONST_INT(m_refRat));
CH_STOP(t1);
m_interpEBStencil[a_datInd]->uncache(a_refCoar, ivar);
CH_START(t2);
m_interpEBStencil[a_datInd]->apply(a_refCoar, a_coar, true, ivar);
CH_STOP(t2);
}
}
// ----------------------------------------------------------------
void EdgeToCell(const FluxBox& a_edgeData,
FArrayBox& a_cellData)
{
// loop over components -- assumption is that in cell-centered
// data, direction changes faster than component.
for (int comp = 0; comp<a_edgeData.nComp(); comp++)
{
// loop over directions
for (int dir = 0; dir < SpaceDim; dir++)
{
Box cellBox = a_cellData.box();
cellBox &= a_edgeData.box();
int cellcomp = SpaceDim*comp + dir;
FORT_EDGETOCELL(CHF_CONST_FRA1(a_edgeData[dir],comp),
CHF_FRA1(a_cellData, cellcomp),
CHF_BOX(cellBox),
CHF_CONST_INT(dir));
} // end loop over directions
} // end loop over components
}
void NewPoissonOp::
levelRelaxColor(FArrayBox& a_phi,
const FArrayBox& a_rhs,
const IntVect& a_color,
const Real& a_weight,
const bool& a_homogeneousPhysBC)
{
CH_assert(a_phi.nComp() == 1);
Box dblBox = a_rhs.box();
//apply domain boundary condtions
m_bc(a_phi, m_domain.domainBox(), m_domain, m_dx[0], a_homogeneousPhysBC);
//find box over which we are iterating
IntVect loIV = dblBox.smallEnd();
IntVect hiIV = dblBox.bigEnd();
for (int idir = 0; idir < SpaceDim; idir++)
{
if (loIV[idir] % 2 != a_color[idir])
{
loIV[idir]++;
}
}
if (loIV <= hiIV)
{
Box coloredBox(loIV, hiIV);
int comp = 0;
Real alpha = 0;
Real beta = 1.;
FORT_AMRPMULTICOLOR(CHF_FRA1(a_phi,comp),
CHF_CONST_FRA1(a_rhs,comp),
CHF_CONST_REAL(a_weight),
CHF_CONST_REAL(alpha),
CHF_CONST_REAL(beta),
CHF_CONST_REALVECT(m_dx),
CHF_BOX(coloredBox));
}
}
void TraceState(/// state at time t+dt/2 on edges in direction dir
FArrayBox& a_stateHalf,
/// cell-centered state at time t
const FArrayBox& a_state,
/// cell-centered velocity at time t
const FArrayBox& a_cellVel,
/// edge-centered advection velocity at time t+dt/2
const FluxBox& a_advectionVel,
/// cell-centered source
const FArrayBox& a_source,
/// Physical domain
const ProblemDomain& a_dProblem,
/// interior of grid patch
const Box& a_gridBox,
/// timeStep
const Real a_dt,
/// cell-spacing
const Real a_dx,
/// direction in which to perform tracing
const int a_dir,
/// which components to trace
const Interval& a_srcComps,
/// where to put traced components in a_stateHalf,
const Interval& a_destComps)
{
int ncomp = a_srcComps.size();
CH_assert (ncomp == a_destComps.size());
int offset = a_destComps.begin() - a_srcComps.begin();
Box edgeBox = a_gridBox;
edgeBox.surroundingNodes(a_dir);
#ifdef SIMPLEUPWIND
// simple cell-to-edge averaging may be causing us problems --
// instead do simple upwinding
for (int comp=a_srcComps.begin(); comp <= a_srcComps.end(); comp++)
{
int destcomp = comp+offset;
FORT_UPWINDCELLTOEDGE(CHF_FRA1(a_stateHalf, destComp),
CHF_CONST_FRA1(a_state,comp),
CHF_CONST_FRA(a_advectionVel[a_dir]),
CHF_BOX(edgeBox),
CHF_CONST_INT(a_dir));
}
#else
// first compute slopes
Box slopesBox = grow(a_gridBox,1);
// these are debugging changes to sync with old code
#ifdef MATCH_OLDCODE
FluxBox tempEdgeVel(slopesBox,1);
tempEdgeVel.setVal(0.0);
FArrayBox tempCellVel(slopesBox,SpaceDim);
tempCellVel.setVal(0.0);
CellToEdge(a_cellVel, tempEdgeVel);
EdgeToCell(tempEdgeVel, tempCellVel);
tempEdgeVel.clear(); // done with this, so reclaim memory
EdgeToCell(a_advectionVel, tempCellVel);
#endif
FArrayBox delS(slopesBox,1);
FArrayBox sHat(slopesBox,1);
FArrayBox sTilde(a_state.box(),1);
for (int comp=a_srcComps.begin(); comp<=a_srcComps.end(); comp++)
{
int destComp = comp+offset;
#ifdef SET_BOGUS_VALUES
delS.setVal(BOGUS_VALUE);
sHat.setVal(BOGUS_VALUE);
sTilde.setVal(BOGUS_VALUE);
#endif
// compute van leer limited slopes in the normal direction
// for now, always limit slopes, although might want to make
// this a parameter
int limitSlopes = 1;
FORT_SLOPES(CHF_FRA1(delS,0),
CHF_CONST_FRA1(a_state,comp),
CHF_BOX(slopesBox),
CHF_CONST_INT(a_dir),
CHF_CONST_INT(limitSlopes));
// this is a way to incorporate the minion correction --
// stateTilde = state + (dt/2)*source
sTilde.copy(a_source,comp,0,1);
Real sourceFactor = a_dt/2.0;
sTilde *= sourceFactor;
sTilde.plus(a_state, comp,0,1);
sHat.copy(sTilde,slopesBox);
// now loop over directions, adding transverse components
for (int localDir=0; localDir < SpaceDim; localDir++)
{
if (localDir != a_dir)
{
// add simple transverse components
FORT_TRANSVERSE(CHF_FRA1(sHat,0),
CHF_CONST_FRA1(sTilde,0),
#ifdef MATCH_OLDCODE
CHF_CONST_FRA1(tempCellVel, localDir),
#else
CHF_CONST_FRA1(a_cellVel,localDir),
#endif
CHF_BOX(slopesBox),
CHF_CONST_REAL(a_dt),
CHF_CONST_REAL(a_dx),
CHF_CONST_INT(localDir));
//CHF_FRA1(temp,0)); // not used in function
}
else if (SpaceDim == 3)
{
// only add cross derivative transverse piece if we're in 3D
// note that we need both components of velocity for this one
FORT_TRANSVERSECROSS(CHF_FRA1(sHat,0),
CHF_CONST_FRA1(sTilde,0),
CHF_CONST_FRA(a_cellVel),
CHF_BOX(slopesBox),
CHF_CONST_REAL(a_dt),
CHF_CONST_REAL(a_dx),
CHF_CONST_INT(localDir));
}
} // end loop over directions
// now compute left and right states and resolve the Reimann
// problem to get single set of edge-centered values
FORT_PREDICT(CHF_FRA1(a_stateHalf,destComp),
CHF_CONST_FRA1(sHat,0),
CHF_CONST_FRA1(delS,0),
CHF_CONST_FRA1(a_cellVel,a_dir),
CHF_CONST_FRA1(a_advectionVel[a_dir],0),
CHF_BOX(edgeBox),
CHF_CONST_REAL(a_dt),
CHF_CONST_REAL(a_dx),
CHF_CONST_INT(a_dir));
} // end loop over components
#endif
}
void
EBCompositeMACProjector::
correctTangentialVelocity(EBFaceFAB& a_velocity,
const EBFaceFAB& a_gradient,
const Box& a_grid,
const EBISBox& a_ebisBox,
const IntVectSet& a_cfivs)
{
CH_TIME("EBCompositeMACProjector::correctTangentialVelocity");
int velDir = a_velocity.direction();
int gradDir = a_gradient.direction();
//veldir is the face on which the velocity lives
//graddir is the direction of the component
//and the face on which the mac gradient lives
CH_assert(velDir != gradDir);
CH_assert(a_velocity.nComp() == 1);
CH_assert(a_gradient.nComp() == 1);
//updating in place in fortran so we have to save a acopy
EBFaceFAB velSave(a_ebisBox, a_velocity.getCellRegion(), velDir, 1);
velSave.copy(a_velocity);
//interior box is the box where all of the stencil can be reached
//without going out of the domain
ProblemDomain domainBox = a_ebisBox.getDomain();
Box interiorBox = a_grid;
interiorBox.grow(1);
interiorBox &= domainBox;
interiorBox.grow(-1);
Box interiorFaceBox = surroundingNodes(interiorBox, velDir);
if (!interiorBox.isEmpty())
{
BaseFab<Real>& regVel = a_velocity.getSingleValuedFAB();
const BaseFab<Real>& regGrad = a_gradient.getSingleValuedFAB();
FORT_REGCORRECTTANVEL(CHF_FRA1(regVel,0),
CHF_CONST_FRA1(regGrad,0),
CHF_BOX(interiorFaceBox),
CHF_INT(velDir),
CHF_INT(gradDir));
}
//do only irregular and boundary cells pointwise
IntVectSet ivsIrreg = a_ebisBox.getIrregIVS(a_grid);
IntVectSet ivsGrid(a_grid);
ivsGrid -= interiorBox;
ivsGrid |= ivsIrreg;
FaceIterator faceit(ivsGrid, a_ebisBox.getEBGraph(), velDir, FaceStop::SurroundingWithBoundary);
for (faceit.reset(); faceit.ok(); ++faceit)
{
//average neighboring grads in grad dir direction
int numGrads = 0;
Real gradAve = 0.0;
const FaceIndex& velFace = faceit();
for (SideIterator sitVel; sitVel.ok(); ++sitVel)
{
const VolIndex& vofSide = velFace.getVoF(sitVel());
const IntVect& ivSide = vofSide.gridIndex();
//do not include stuff over coarse-fine interface and inside the domain
//cfivs includes cells just outside domain
if (!a_cfivs.contains(ivSide) && domainBox.contains(ivSide))
{
for (SideIterator sitGrad; sitGrad.ok(); ++sitGrad)
{
Vector<FaceIndex> gradFaces = a_ebisBox.getFaces(vofSide, gradDir, sitGrad());
for (int iface = 0; iface < gradFaces.size(); iface++)
{
if (!gradFaces[iface].isBoundary())
{
numGrads++;
gradAve += a_gradient(gradFaces[iface], 0);
}
}
}//end loop over gradient sides
}//end cfivs check
else
{
// inside coarse/fine interface or at domain boundary. extrapolate from neighboring vofs to get the gradient
const Side::LoHiSide inSide = flip(sitVel());
const VolIndex& inSideVof = velFace.getVoF(inSide);
const IntVect& inSideIV = inSideVof.gridIndex();
IntVect inSideFarIV = inSideIV;
inSideFarIV[velDir] += sign(inSide);
if (domainBox.contains(inSideIV) && domainBox.contains(inSideFarIV))
{
Vector<VolIndex> farVofs = a_ebisBox.getVoFs(inSideFarIV);
if (farVofs.size() == 1)
{
const VolIndex& inSideFarVof = farVofs[0];
for (SideIterator sitGrad; sitGrad.ok(); ++sitGrad)
{
//get the grad for the face adjoining inSideVof on the sitGrad side, in the gradDir direction
Vector<FaceIndex> gradFaces = a_ebisBox.getFaces(inSideVof , gradDir, sitGrad());
Vector<FaceIndex> gradFarFaces = a_ebisBox.getFaces(inSideFarVof, gradDir, sitGrad());
if ( (gradFaces.size() == 1) && (gradFarFaces.size() == 1) )
{
// if ( (!gradFaces[0].isBoundary()) && (!gradFarFaces[0].isBoundary()) )
// {
const Real& inSideGrad = a_gradient(gradFaces[0], 0);
const Real& inSideFarGrad = a_gradient(gradFarFaces[0], 0);
Real extrapGrad = 2.0*inSideGrad - inSideFarGrad;
gradAve += extrapGrad;
numGrads++;
// }
}
}
}
}
}//end cfivs check
}//end loop over sides of velocity face
if (numGrads > 1)
{
gradAve /= Real(numGrads);
}
//remember that the fortran updated the velocity in place so
//we have to use the saved velocity
a_velocity(velFace, 0) = velSave(velFace, 0) - gradAve;
}
}
void
EBCoarseAverage::averageFAB(EBCellFAB& a_coar,
const EBCellFAB& a_fine,
const DataIndex& a_datInd,
const Interval& a_variables) const
{
CH_TIME("EBCoarseAverage::averageFAB(EBCellFAB)");
CH_assert(isDefined());
//do all cells as if they were regular
BaseFab<Real>& coarRegFAB = a_coar.getSingleValuedFAB();
const BaseFab<Real>& fineRegFAB = a_fine.getSingleValuedFAB();
Box refbox(IntVect::Zero, (m_refRat-1)*IntVect::Unit);
const Box& coarBox = m_eblgCoFi.getDBL().get(a_datInd);
#ifndef NDEBUG
Box fineBox = refine(coarBox, m_refRat);
CH_assert(coarRegFAB.box().contains(coarBox));
CH_assert(fineRegFAB.box().contains(fineBox));
#endif
for (int ivar = a_variables.begin();
ivar <= a_variables.end(); ivar++)
{
FORT_EBAVERAGE(CHF_FRA1(coarRegFAB,ivar),
CHF_CONST_FRA1(fineRegFAB,ivar),
CHF_BOX(coarBox),
CHF_CONST_INT(m_refRat),
CHF_BOX(refbox));
}
//overwrite irregular cells
//recall that datInd is from the fine layout.
const EBISBox& ebisBoxCoar = m_eblgCoFi.getEBISL()[a_datInd];
const EBISBox& ebisBoxFine = m_eblgFine.getEBISL()[a_datInd];
IntVectSet coarIrregIVS = ebisBoxCoar.getIrregIVS(coarBox);
//fine cell volume is normalized to one.
//compute coarse volume
Real dxCoar = Real(m_refRat);
Real cellVolCoar = 1.0;
for (int idir = 0; idir < SpaceDim; idir++)
cellVolCoar *= dxCoar;
for (VoFIterator vofitCoar(coarIrregIVS, ebisBoxCoar.getEBGraph());
vofitCoar.ok(); ++vofitCoar)
{
const VolIndex& coarVoF = vofitCoar();
Vector<VolIndex> fineVoFs =
m_eblgCoFi.getEBISL().refine(coarVoF, m_refRat, a_datInd);
Real volCoar = cellVolCoar*ebisBoxCoar.volFrac(coarVoF);
for (int ivar = a_variables.begin();
ivar <= a_variables.end(); ivar++)
{
Real dataVal = 0.0;
if (volCoar > 0.)
{
for (int ifine = 0; ifine < fineVoFs.size(); ifine++)
{
const VolIndex& fineVoF = fineVoFs[ifine];
//fine cell volume is normalized to one...
Real volFine = ebisBoxFine.volFrac(fineVoF);
Real fineVal = a_fine(fineVoF, ivar);
if (volFine > 0.)
{
dataVal += fineVal*volFine;
}
}
dataVal /= volCoar;
}
else
{
//if there is no real volume, just take the ave
//of fine values
for (int ifine = 0; ifine < fineVoFs.size(); ifine++)
{
const VolIndex& fineVoF = fineVoFs[ifine];
Real fineVal = a_fine(fineVoF, ivar);
dataVal += fineVal;
}
if (fineVoFs.size() > 0)
{
dataVal /= Real(fineVoFs.size());
}
}
a_coar(coarVoF, ivar) = dataVal;
}
}
}
void
EBGradDivFilter::
cellGradient(EBCellFAB& a_gradDiv,
const EBCellFAB& a_gradVel,
const EBCellFAB& a_vel,
const EBFluxFAB& a_fluxVel,
const EBFluxFAB& a_div,
const Box& a_grid,
const EBISBox& a_ebisBox,
const DataIndex& a_dataIndex,
bool a_multiplyByLambda,
bool a_noExtrapToCovered)
{
CH_TIME("EBGradDivFilter::cellGradient");
int icomp = 0;
EBCellFAB& lambdaFAB = m_lambda[a_dataIndex];
IntVectSet irregIVS = a_ebisBox.getIrregIVS(a_grid);
for (int faceDir = 0; faceDir < SpaceDim; faceDir++)
{
const EBFaceFAB& faceDiv = a_div[faceDir];
const BaseFab<Real>& regFaceDiv = faceDiv.getSingleValuedFAB();
const BaseFab<Real>& regLambda = lambdaFAB.getSingleValuedFAB();
BaseFab<Real>& regGradDiv = a_gradDiv.getSingleValuedFAB();
int imultByLambda = 0;
if (a_multiplyByLambda)
{
imultByLambda = 1;
}
FORT_EBGDFCELLGRAD(CHF_FRA1(regGradDiv, faceDir),
CHF_CONST_FRA1(regFaceDiv, icomp),
CHF_CONST_FRA1(regLambda, icomp),
CHF_BOX(a_grid),
CHF_CONST_REAL(m_dxFine[faceDir]),
CHF_CONST_INT(faceDir),
CHF_CONST_INT(imultByLambda));
//nonconservative gradient
for (VoFIterator vofit(irregIVS, a_ebisBox.getEBGraph()); vofit.ok(); ++vofit)
{
const VolIndex& vof = vofit();
Real gradVal = 0.0;
Vector<FaceIndex> facesHi = a_ebisBox.getFaces(vof, faceDir, Side::Hi);
Vector<FaceIndex> facesLo = a_ebisBox.getFaces(vof, faceDir, Side::Lo);
bool zeroGrad = a_noExtrapToCovered && ((facesHi.size() == 0) || (facesLo.size() == 0));
if (zeroGrad)
{
gradVal = 0;
}
else
{
Real valHi= 0;
if (facesHi.size() > 0)
{
for (int iface = 0; iface < facesHi.size(); iface++)
{
valHi += faceDiv(facesHi[iface], icomp);
}
valHi /= facesHi.size();
}
else
{
valHi = ccpGetCoveredExtrapValue(vof, faceDir, Side::Hi,
faceDiv, a_ebisBox, a_grid,
m_domainFine, m_dxFine, icomp);
}
Real valLo= 0;
if (facesLo.size() > 0)
{
for (int iface = 0; iface < facesLo.size(); iface++)
{
valLo += faceDiv(facesLo[iface], 0);
}
valLo /= facesLo.size();
}
else
{
valLo = ccpGetCoveredExtrapValue(vof, faceDir, Side::Lo ,
faceDiv, a_ebisBox, a_grid,
m_domainFine, m_dxFine, icomp);
}
gradVal = (valHi-valLo)/(m_dxFine[faceDir]);
//multiply the lambda in since we have the area fractions lying about
if (a_multiplyByLambda)
{
Real lambda = lambdaFAB(vof, 0);
gradVal *= lambda;
}
}
a_gradDiv(vof, faceDir) = gradVal;
}
}
}
// ---------------------------------------------------------------
// tag cells for regridding
void
AMRNavierStokes::tagCells(IntVectSet & a_tags)
{
if (s_verbosity >= 3)
{
pout () << "AMRNavierStokes::tagCells " << m_level << endl;
}
IntVectSet local_tags;
// create tags based on something or other
// for now, don't do anything
const DisjointBoxLayout& level_domain = newVel().getBoxes();
if (s_tag_vorticity)
{
LevelData<FArrayBox> vorticity;
LevelData<FArrayBox> mag_vorticity;
if (SpaceDim == 2)
{
vorticity.define(level_domain,1);
}
else if (SpaceDim == 3)
{
vorticity.define(level_domain,SpaceDim);
mag_vorticity.define(level_domain,1);
}
computeVorticity(vorticity);
Interval vortInterval(0,0);
if (SpaceDim == 3)
{
vortInterval = Interval(0,SpaceDim-1);
}
Real tagLevel = norm(vorticity, vortInterval, 0);
// Real tagLevel = 1.0;
//tagLevel *= s_vort_factor/m_dx;
// actually tag where vort*dx > s_vort_factor*max(vort)
tagLevel = s_vort_factor/m_dx;
if (tagLevel > 0)
{
// now tag where vorticity magnitude is greater than or equal
// to tagLevel
DataIterator dit = vorticity.dataIterator();
for (dit.reset(); dit.ok(); ++dit)
{
FArrayBox& vortFab = vorticity[dit];
// this only needs to be done in 3d...
if (SpaceDim==3)
{
FArrayBox& magVortFab = mag_vorticity[dit];
FORT_MAGVECT(CHF_FRA1(magVortFab,0),
CHF_CONST_FRA(vortFab),
CHF_BOX(level_domain[dit]));
}
BoxIterator bit(vortFab.box());
for (bit.begin(); bit.ok(); ++bit)
{
const IntVect& iv = bit();
if (SpaceDim == 2)
{
if (abs(vortFab(iv)) >= tagLevel)
{
local_tags |= iv;
}
}
else if (SpaceDim == 3)
{
FArrayBox& magVortFab = mag_vorticity[dit];
if (abs(magVortFab(iv)) >= tagLevel)
{
local_tags |= iv;
}
} // end if DIM=3
} // end loop over interior of box
} // loop over grids
} // if taglevel > 0
} // if tagging on vorticity
a_tags = local_tags;
}
void
EBCoarseAverage::averageFAB(EBFaceFAB& a_coar,
const EBFaceFAB& a_fine,
const DataIndex& a_datInd,
const Interval& a_variables,
const int& a_dir) const
{
CH_TIME("EBCoarseAverage::averageFAB(EBFaceFAB)");
CH_assert(isDefined());
//do all cells as if they were regular
BaseFab<Real>& coarRegFAB = a_coar.getSingleValuedFAB();
const BaseFab<Real>& fineRegFAB = a_fine.getSingleValuedFAB();
Box refbox(IntVect::Zero,
(m_refRat-1)*IntVect::Unit);
refbox.surroundingNodes(a_dir);
const Box& coarDBLBox = m_eblgCoFi.getDBL().get(a_datInd);
Box coarFaceBox = coarDBLBox;
coarFaceBox.surroundingNodes(a_dir);
#ifndef NDEBUG
Box fineBox = refine(coarFaceBox, m_refRat);
CH_assert(coarRegFAB.box().contains(coarFaceBox));
CH_assert(fineRegFAB.box().contains(fineBox));
#endif
for (int ivar = a_variables.begin();
ivar <= a_variables.end(); ivar++)
{
FORT_EBAVERAGEFACE(CHF_FRA1(coarRegFAB,ivar),
CHF_CONST_FRA1(fineRegFAB,ivar),
CHF_BOX(coarFaceBox),
CHF_CONST_INT(m_refRat),
CHF_BOX(refbox),
CHF_CONST_INT(a_dir));
}
//overwrite irregular cells
//recall that datInd is from the fine layout.
const EBISBox& ebisBoxCoar = m_eblgCoFi.getEBISL()[a_datInd];
const EBISBox& ebisBoxFine = m_eblgFine.getEBISL()[a_datInd];
IntVectSet coarIrregIVS = ebisBoxCoar.getIrregIVS(coarDBLBox);
//fine face area is normalized to one.
//compute coarse volume
Real dxCoar = Real(m_refRat);
Real faceAreaCoar = 1.0;
for (int idir = 0; idir < (SpaceDim - 1); idir++)
faceAreaCoar *= dxCoar;
for (FaceIterator faceitCoar(coarIrregIVS, ebisBoxCoar.getEBGraph(),a_dir,
FaceStop::SurroundingWithBoundary);
faceitCoar.ok(); ++faceitCoar)
{
const FaceIndex& coarFace = faceitCoar();
Vector<FaceIndex> fineFaces = m_eblgCoFi.getEBISL().refine(coarFace,m_refRat,a_datInd);
Real areaCoar = faceAreaCoar*ebisBoxCoar.areaFrac(coarFace);
for (int ivar = a_variables.begin();
ivar <= a_variables.end(); ivar++)
{
Real dataVal = 0.0;
if (areaCoar > 0.)
{
for (int ifine = 0; ifine < fineFaces.size(); ifine++)
{
const FaceIndex& fineFace = fineFaces[ifine];
//fine face area is normalized to one...
Real areaFine = ebisBoxFine.areaFrac(fineFace);
Real fineVal = a_fine(fineFace, ivar);
if (areaFine > 0.)
{
dataVal += fineVal*areaFine;
}
}
dataVal /= areaCoar;
}
else
{
//if there is no real area, just take the ave
//of fine values
for (int ifine = 0; ifine < fineFaces.size(); ifine++)
{
const FaceIndex& fineFace = fineFaces[ifine];
Real fineVal = a_fine(fineFace, ivar);
dataVal += fineVal;
}
if (fineFaces.size() > 0)
{
dataVal /= Real(fineFaces.size());
}
}
a_coar(coarFace, ivar) = dataVal;
}
}
}
void
EBCoarsen::coarsenFAB(EBCellFAB& a_coar,
const EBCellFAB& a_fine,
const DataIndex& a_datInd,
const Interval& a_variables)
{
CH_assert(isDefined());
//do all cells as if they were regular
BaseFab<Real>& coarRegFAB = a_coar.getSingleValuedFAB();
const BaseFab<Real>& fineRegFAB = a_fine.getSingleValuedFAB();
//this is how much we need to grow a coarse box to get a fine box that
// only has the fine iv's that are neighbors of the coarse iv
const int fac = 1 - m_refRat/2;//NOTE: fac = 0 for refRat==2...
Box refbox(IntVect::Zero,
(m_refRat-1)*IntVect::Unit);
refbox.grow(fac);
Box coarBox = m_coarsenedFineGrids.get(a_datInd);
Box fineBox = refine(coarBox, m_refRat);
CH_assert(coarRegFAB.box().contains(coarBox));
CH_assert(fineRegFAB.box().contains(fineBox));
for (int ivar = a_variables.begin();
ivar <= a_variables.end(); ivar++)
{
BaseFab<Real> laplFine(fineBox, 1);
laplFine.setVal(0.);
for (int idir = 0; idir < SpaceDim; idir++)
{
Box loBox, hiBox, centerBox;
int hasLo, hasHi;
EBArith::loHiCenter(loBox, hasLo,
hiBox, hasHi,
centerBox, m_domainFine,
fineBox, idir, &((*m_cfivsPtr)[a_datInd]));
FORT_H2LAPL1DADDITIVE(CHF_FRA1(laplFine, 0),
CHF_FRA1(fineRegFAB, ivar),
CHF_CONST_INT(idir),
CHF_BOX(loBox),
CHF_CONST_INT(hasLo),
CHF_BOX(hiBox),
CHF_CONST_INT(hasHi),
CHF_BOX(centerBox));
}
FORT_EBCOARSEN(CHF_FRA1(coarRegFAB,ivar),
CHF_CONST_FRA1(fineRegFAB,ivar),
CHF_CONST_FRA1(laplFine, 0),
CHF_BOX(coarBox),
CHF_CONST_INT(m_refRat),
CHF_BOX(refbox));
}
//overwrite irregular vofs and coarse vofs next to the cfivs if refRat<4,
// for these vofs we coarsen based on
// taylor expansions from fine vofs to the coarse cell center
coarsenIrreg(a_coar,a_fine,a_datInd,a_variables);
}
void
EBMGInterp::pwlInterpFAB(EBCellFAB& a_refCoar,
const Box& a_coarBox,
const EBCellFAB& a_coar,
const DataIndex& a_datInd,
const Interval& a_variables) const
{
CH_TIMERS("EBMGInterp::pwlinterpfab");
CH_TIMER("regular_interp", t1);
CH_TIMER("irregular_interp", t2);
CH_assert(isDefined());
//first interpolate piecewise constant.
pwcInterpFAB(a_refCoar,
a_coarBox,
a_coar,
a_datInd,
a_variables);
//then add in slope*distance.
const Box& coarBox = a_coarBox;
for (int ivar = a_variables.begin(); ivar <= a_variables.end(); ivar++)
{
//save stuff at irreg cells because fortran result will be garbage
//and this is an incremental process
m_linearEBStencil[a_datInd]->cache(a_refCoar, ivar);
//do all cells as if they were regular
Box refBox(IntVect::Zero, IntVect::Zero);
refBox.refine(m_refRat);
const BaseFab<Real>& coarRegFAB = a_coar.getSingleValuedFAB();
BaseFab<Real>& refCoarRegFAB = a_refCoar.getSingleValuedFAB();
CH_START(t1);
Real dxf = 1.0/m_coarDomain.size(0);
Real dxc = 2.0*dxf;
//do every cell as regular
for (int idir = 0; idir < SpaceDim; idir++)
{
FORT_PROLONGADDSLOPE(CHF_FRA1(refCoarRegFAB,ivar),
CHF_CONST_FRA1(coarRegFAB,ivar),
CHF_BOX(coarBox),
CHF_BOX(refBox),
CHF_INT(idir),
CHF_REAL(dxf),
CHF_REAL(dxc),
CHF_CONST_INT(m_refRat));
}
CH_STOP(t1);
//replace garbage fortran put in with original values (at irregular cells)
m_linearEBStencil[a_datInd]->uncache(a_refCoar, ivar);
CH_START(t2);
//do what fortran should have done at irregular cells.
m_linearEBStencil[a_datInd]->apply(a_refCoar, a_coar, true, ivar);
CH_STOP(t2);
}
}
// ---------------------------------------------------------
void
AMRNavierStokes::computeVorticity(LevelData<FArrayBox>& a_vorticity) const
{
// this breaks the "const"-ness of the function,
// but is necessary to ensure that boundary
// conditions are properly set.
LevelData<FArrayBox>& vel =
*(const_cast<LevelData<FArrayBox>*>(m_vel_new_ptr));
const DisjointBoxLayout& grids = vel.getBoxes();
if (m_level > 0)
{
// do quadratic C/F BC's
// for now, assume that BC's are with new velocity
// (may need to be changed for fine-level regridding)
LevelData<FArrayBox>& crseVel = crseNSPtr()->newVel();
const DisjointBoxLayout& crseGrids = crseVel.getBoxes();
int nRefCrse = crseNSPtr()->refRatio();
QuadCFInterp interpolator(grids, &crseGrids, m_dx, nRefCrse,
SpaceDim, m_problem_domain);
interpolator.coarseFineInterp(vel, crseVel);
}
Interval velComps(0,SpaceDim-1);
vel.exchange(velComps);
DataIterator dit = vel.dataIterator();
// at the moment, do extrap at physical boundaries
// (same effect as one-sided differencing)
BCHolder vortVelBC = m_physBCPtr->extrapFuncBC(1);
for (dit.reset(); dit.ok(); ++dit)
{
// apply physical BC's
vortVelBC(vel[dit], grids[dit],
m_problem_domain, m_dx,
true); // homogeneous
if (SpaceDim == 3)
{
for (int dir=0; dir<SpaceDim; dir++)
{
// and then compute vorticity
FORT_COMPUTEVORT(CHF_FRA1(a_vorticity[dit],dir),
CHF_CONST_FRA(vel[dit]),
CHF_BOX(grids[dit]),
CHF_CONST_REAL(m_dx),
CHF_CONST_INT(dir));
}
}
else if (SpaceDim == 2)
{
int dir = 2;
FORT_COMPUTEVORT(CHF_FRA1(a_vorticity[dit],0),
CHF_CONST_FRA(vel[dit]),
CHF_BOX(grids[dit]),
CHF_CONST_REAL(m_dx),
CHF_CONST_INT(dir));
} // end dimensionality choice
} // end loop over grids
}
void
EBPoissonOp::
applyDomainFlux(Box * a_loBox,
Box * a_hiBox,
int * a_hasLo,
int * a_hasHi,
Box & a_dblBox,
int a_nComps,
BaseFab<Real> & a_phiFAB,
bool a_homogeneousPhysBC,
const DataIndex& a_dit,
const Real& a_beta)
{
CH_TIME("EBPoissonOp::applyDomainFlux");
CH_assert(m_domainBC != NULL);
for (int idir=0; idir<SpaceDim; idir++)
{
EBArith::loHi(a_loBox[idir], a_hasLo[idir],
a_hiBox[idir], a_hasHi[idir],
m_eblg.getDomain(), a_dblBox, idir);
for (int comp = 0; comp<a_nComps; comp++)
{
if (a_hasLo[idir] == 1)
{
Box lbox=a_loBox[idir];
lbox.shift(idir,-1);
BaseFab<Real> loFaceFlux(a_loBox[idir],a_nComps);
int side = -1;
m_domainBC->getFaceFlux(loFaceFlux,a_phiFAB,m_origin,m_dx,idir,Side::Lo,a_dit,m_time,a_homogeneousPhysBC);
FORT_REGAPPLYDOMAINFLUX_INPLACE(CHF_FRA1(a_phiFAB,comp),
CHF_CONST_FRA1(loFaceFlux,comp),
CHF_CONST_REAL(m_dx[idir]),
CHF_CONST_INT(side),
CHF_CONST_INT(idir),
CHF_BOX(lbox));
}
if (a_hasHi[idir] == 1)
{
Box hbox=a_hiBox[idir];
hbox.shift(idir,1);
BaseFab<Real> hiFaceFlux(a_hiBox[idir],a_nComps);
int side = 1;
m_domainBC->getFaceFlux(hiFaceFlux,a_phiFAB,m_origin,m_dx,idir,Side::Hi,a_dit,m_time,a_homogeneousPhysBC);
FORT_REGAPPLYDOMAINFLUX_INPLACE(CHF_FRA1(a_phiFAB,comp),
CHF_CONST_FRA1(hiFaceFlux,comp),
CHF_CONST_REAL(m_dx[idir]),
CHF_CONST_INT(side),
CHF_CONST_INT(idir),
CHF_BOX(hbox));
}
}
}
}
void
EBGradDivFilter::
gradVel(EBCellFAB& a_gradVel,
const EBCellFAB& a_vel,
const Box& a_grid,
const EBISBox& a_ebisBox,
bool a_lowOrderOneSide)
{
CH_TIME("EBGradDivFilter::gradVel");
CH_assert(a_gradVel.nComp() == SpaceDim*SpaceDim);
CH_assert(a_vel.nComp() == SpaceDim);
int iLowOrderOneSide = 0;
if (a_lowOrderOneSide)
{
iLowOrderOneSide = 1;
}
for (int derivDir = 0; derivDir < SpaceDim; derivDir++)
{
Box loBox, hiBox, centerBox;
int hasLo, hasHi;
EBArith::loHiCenter(loBox, hasLo, hiBox, hasHi, centerBox, m_domainFine, a_grid, derivDir);
for (int velDir = 0; velDir < SpaceDim; velDir++)
{
BaseFab<Real>& regGradVel = a_gradVel.getSingleValuedFAB();
const BaseFab<Real>& regVel = a_vel.getSingleValuedFAB();
int gradcomp = getGradComp(velDir, derivDir);
FORT_EBGDFGRADVEL(CHF_FRA1(regGradVel, gradcomp),
CHF_CONST_FRA1(regVel, velDir),
CHF_BOX(loBox),
CHF_INT(hasLo),
CHF_BOX(hiBox),
CHF_INT(hasHi),
CHF_BOX(centerBox),
CHF_CONST_REAL(m_dxFine[derivDir]),
CHF_CONST_INT(derivDir),
CHF_CONST_INT(iLowOrderOneSide));
IntVectSet ivsIrreg = a_ebisBox.getIrregIVS(a_grid);
if (!a_lowOrderOneSide)
{
ivsIrreg.grow(1);
ivsIrreg &= a_grid;
}
for (VoFIterator vofit(ivsIrreg, a_ebisBox.getEBGraph()); vofit.ok(); ++vofit)
{
const VolIndex& vof = vofit();
bool hasHi, hasLo;
VolIndex vofHi, vofLo;
Vector<FaceIndex> facesHi = a_ebisBox.getFaces(vof, derivDir, Side::Hi);
Vector<FaceIndex> facesLo = a_ebisBox.getFaces(vof, derivDir, Side::Lo);
hasHi = (facesHi.size() == 1) && (!facesHi[0].isBoundary());
hasLo = (facesLo.size() == 1) && (!facesLo[0].isBoundary());
if (hasLo)
{
vofLo = facesLo[0].getVoF(Side::Lo);
}
if (hasHi)
{
vofHi = facesHi[0].getVoF(Side::Hi);
}
Real gradVal;
if (hasHi && hasLo)
{
gradVal = (a_vel(vofHi, velDir) - a_vel(vofLo, velDir))/(2.*m_dxFine[derivDir]);
}
else if (hasHi || hasLo)
{
//do one-sided diff
CH_assert(!(hasHi && hasLo));
Side::LoHiSide side;
VolIndex vofNear;
if (hasLo)
{
side = Side::Lo;
vofNear = vofLo;
}
else
{
side = Side::Hi;
vofNear = vofHi;
}
int isign = sign(side);
Vector<FaceIndex> facesFar = a_ebisBox.getFaces(vofNear, derivDir, side);
bool hasVoFFar = (facesFar.size()==1) && (!facesFar[0].isBoundary());
Real valStart = a_vel(vof, velDir);
Real valNear = a_vel(vofNear, velDir);
if (hasVoFFar && !a_lowOrderOneSide)
{
VolIndex vofFar = facesFar[0].getVoF(side);
Real valFar = a_vel(vofFar, velDir);
gradVal = (4*(valNear - valStart)- (valFar-valStart))/(2.*isign*m_dxFine[derivDir]);
}
else
{
//do not have another point for stencil or specified low order one-sided.
//drop order of derivative
gradVal = (valNear - valStart)/(isign*m_dxFine[derivDir]);
}
}
else
{
//only have one point, can only set gradient to zero
gradVal = 0.0;
}
a_gradVel(vof, gradcomp) = gradVal;
}
}
}
}
/// Set up initial conditions
void RSIBC::initializeBdry(LevelData<FArrayBox>& a_B)
{
const Real tmpVal = 0.0;
const Real tmpVal2 = 1e10;
for (DataIterator dit = a_B.dataIterator(); dit.ok(); ++dit)
{
// Storage for current grid
FArrayBox& B = a_B[dit()];
// Box of current grid
Box bBox = B.box();
bBox &= m_domain;
// Set up initial condition in this grid
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_VX),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_VZ),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_SXY),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_SYZ),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_V),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_DX),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_DZ),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_DT),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_RT),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal2));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_SYY),
CHF_BOX(bBox),
CHF_CONST_REAL(tmpVal));
FORT_LINELASTSETFAB(CHF_FRA1(B,RX_PSI),
CHF_BOX(bBox),
CHF_CONST_REAL(m_psi));
}
}
void
EBGradDivFilter::
faceDivergence(EBFaceFAB& a_divVel,
const EBCellFAB& a_gradVel,
const EBCellFAB& a_vel,
const EBFluxFAB& a_fluxVel,
const Box& a_grid,
const EBISBox& a_ebisBox,
const int& a_faceDir)
{
CH_TIME("EBGradDivFilter::faceDivergence");
CH_assert(a_divVel.nComp() == 1);
CH_assert(a_vel.nComp() == SpaceDim);
a_divVel.setVal(0.0);
BaseFab<Real>& regDivVel = a_divVel.getSingleValuedFAB();
const BaseFab<Real>& regVel = a_vel.getSingleValuedFAB();
const BaseFab<Real>& regGradVel= a_gradVel.getSingleValuedFAB();
Box interiorFaceBox = a_grid;
interiorFaceBox.grow(a_faceDir, 1);
interiorFaceBox &= m_domainFine;
interiorFaceBox.grow(a_faceDir, -1);
interiorFaceBox.surroundingNodes(a_faceDir);
for (int divDir = 0; divDir < SpaceDim; divDir++)
{
FORT_EBGDFFACEDIVINCR(CHF_FRA1(regDivVel, 0),
CHF_FRA(regVel),
CHF_FRA(regGradVel),
CHF_BOX(interiorFaceBox),
CHF_REAL(m_dxFine[divDir]),
CHF_INT(a_faceDir),
CHF_INT(divDir));
}
IntVectSet irregIVS = a_ebisBox.getIrregIVS(a_grid);
FaceStop::WhichFaces stopCrit;
if (m_domainFine.isPeriodic(a_faceDir))
{
stopCrit = FaceStop::SurroundingWithBoundary;
}
else
{
stopCrit = FaceStop::SurroundingNoBoundary;
}
for (FaceIterator faceit(irregIVS, a_ebisBox.getEBGraph(), a_faceDir,
stopCrit);
faceit.ok(); ++faceit)
{
Real divVal = 0.0;
for (int divDir=0; divDir<SpaceDim; divDir++)
{
if (divDir == a_faceDir)
{
divVal += (a_vel(faceit().getVoF(Side::Hi), a_faceDir) -
a_vel(faceit().getVoF(Side::Lo), a_faceDir))/m_dxFine[divDir];
}
else
{
// take average of cell-centered tangential derivatives
// and increment div
//so this is partial (vel_divdir)/partial (x_divdir)
int velcomp = divDir;
int gradcomp = getGradComp(velcomp, divDir);
divVal += 0.5*(a_gradVel(faceit().getVoF(Side::Hi), gradcomp) +
a_gradVel(faceit().getVoF(Side::Lo), gradcomp));
}
}
a_divVel(faceit(), 0) = divVal;
} // end loop over interior irregular faces
if (!m_domainFine.isPeriodic(a_faceDir))
{
//set the boundary face divergence to an extrapolation of the neighboring face divergences
for (SideIterator sit; sit.ok(); ++sit)
{
Box bndryBox = adjCellBox(a_grid, a_faceDir, sit(), 1);
int ishift = -sign(sit());
bndryBox.shift(a_faceDir, ishift);
IntVectSet bndryIVS(bndryBox);
for (FaceIterator faceit(bndryIVS, a_ebisBox.getEBGraph(), a_faceDir,
FaceStop::AllBoundaryOnly);
faceit.ok(); ++faceit)
{
Real faceDiv = getDomainDivergence(a_gradVel,
a_vel,
a_fluxVel,
a_grid,
a_ebisBox,
a_faceDir,
faceit(),
sit());
a_divVel(faceit(), 0) = faceDiv;
}
}
}
}