ImageLayerComposite::~ImageLayerComposite()
{
MOZ_COUNT_DTOR(ImageLayerComposite);
MOZ_ASSERT(mDestroyed);
CleanupResources();
}
void
PaintedLayerComposite::Destroy()
{
if (!mDestroyed) {
CleanupResources();
mDestroyed = true;
}
}
void
ThebesLayerComposite::Destroy()
{
if (!mDestroyed) {
CleanupResources();
mDestroyed = true;
}
}
void
LayerComposite::Destroy()
{
if (!mDestroyed) {
mDestroyed = true;
CleanupResources();
}
}
void
CompositorOGL::Destroy()
{
if (gl()) {
gl()->MakeCurrent();
if (mTextures.Length() > 0) {
gl()->fDeleteTextures(mTextures.Length(), &mTextures[0]);
}
mVBOs.Flush(gl());
if (mFPS) {
if (mFPS->mTexture > 0)
gl()->fDeleteTextures(1, &mFPS->mTexture);
mFPS->mVBOs.Flush(gl());
}
}
mTextures.SetLength(0);
if (!mDestroyed) {
mDestroyed = true;
CleanupResources();
}
}
PaintedLayerComposite::~PaintedLayerComposite()
{
MOZ_COUNT_DTOR(PaintedLayerComposite);
CleanupResources();
}
ThebesLayerComposite::~ThebesLayerComposite()
{
MOZ_COUNT_DTOR(ThebesLayerComposite);
CleanupResources();
}
ImageLayerMLGPU::~ImageLayerMLGPU()
{
CleanupResources();
}
void
ImageLayerMLGPU::ClearCachedResources()
{
CleanupResources();
}
void
ImageLayerMLGPU::Disconnect()
{
CleanupResources();
}
int
Process(etProcMode ProcMode, // processing mode
int MinLength, // only process ref/rel elements of at least this length
int MaxLength, // only process ref/rel elements which are no longer than this length
int RefExtend, // extend ref left+right flanks by this many bases
int RelExtend, // extend rel left+right flanks by this many bases
int JoinDistance, // if > 0 then join elements which only differ by at most this distance beween end of element i and start of element i+1
int MinMergeLength, // only output merged elements of at least this length
int MaxMergeLength, // only output merged elements which are no longer than this length
char *pszRefFile, // CSV file containing ref elements
char *pszRelFile, // CSV file containing rel elements
char *pszOutLociFile, // write element loci into this CSV file
char *pszRefSpecies, // replacement ref species in output loci file
char *pszRelSpecies, // replacement rel species in output loci file
char *pszElType) // replacement element type in output loci file
{
int Rslt;
CChromMaps *pChromMaps;
tsProcParams ProcParams;
memset(&ProcParams,0,sizeof(ProcParams));
ProcParams.MinLength = MinLength;
ProcParams.MaxLength = MaxLength;
ProcParams.MinMergeLength = MinMergeLength;
ProcParams.MaxMergeLength = MaxMergeLength;
ProcParams.pszOutLociFile = pszOutLociFile;
ProcParams.pszRefFile=pszRefFile;
ProcParams.pszRelFile=pszRelFile;
ProcParams.pszRefSpecies=pszRefSpecies;
ProcParams.pszRelSpecies=pszRelSpecies;
ProcParams.pszElType=pszElType;
ProcParams.RefExtend = RefExtend;
ProcParams.RelExtend = RelExtend;
ProcParams.JoinDistance = JoinDistance;
pChromMaps = new CChromMaps;
if((Rslt = pChromMaps->Load(false,MinLength,MaxLength,RefExtend,pszRefFile,RelExtend,pszRelFile))<0)
{
gDiagnostics.DiagOut(eDLFatal,gszProcName,"Unable to load files");
return(Rslt);
}
#ifdef _WIN32
if((ProcParams.hRsltsLociFile = open(pszOutLociFile, _O_RDWR | _O_BINARY | _O_SEQUENTIAL | _O_CREAT | _O_TRUNC, _S_IREAD | _S_IWRITE ))==-1)
#else
if((ProcParams.hRsltsLociFile = open(pszOutLociFile, O_RDWR | O_CREAT | O_TRUNC, S_IREAD | S_IWRITE ))==-1)
#endif
{
gDiagnostics.DiagOut(eDLFatal,gszProcName,"Unable to create loci file: %s - %s",pszOutLociFile,strerror(errno));
CleanupResources(&ProcParams);
return(eBSFerrCreateFile);
}
gDiagnostics.DiagOut(eDLInfo,gszProcName,"Loci CSV file created/truncated: '%s'",pszOutLociFile);
switch(ProcMode) {
case ePMElIntersect:
Rslt = pChromMaps->Process(eElIntersect,OutputLoci,&ProcParams);
break;
case ePMElRefExclusive:
Rslt = pChromMaps->Process(eElRefExclusive,OutputLoci,&ProcParams);
break;
case ePMElRelExclusive:
Rslt = pChromMaps->Process(eElRelExclusive,OutputLoci,&ProcParams);
break;
case ePMElRefRelUnion:
Rslt = pChromMaps->Process(eElRefRelUnion,OutputLoci,&ProcParams);
break;
case ePMElRefNotRefRel:
Rslt = pChromMaps->Process(eElRefNotRefRel,OutputLoci,&ProcParams);
break;
}
if(Rslt >= 0 && ProcParams.hRsltsLociFile != -1 && ProcParams.JoinDistance > 0 && ProcParams.szCurChrom[0] != '\0')
Rslt = WriteLoci(ProcParams.szCurChrom,ProcParams.CurStartLoci,ProcParams.CurEndLoci,&ProcParams);
if(Rslt >= 0 && ProcParams.hRsltsLociFile != -1 && ProcParams.RsltLineBuffOfs)
{
CUtility::SafeWrite(ProcParams.hRsltsLociFile,ProcParams.szRsltLineBuff,ProcParams.RsltLineBuffOfs);
ProcParams.RsltLineBuffOfs = 0;
}
if(Rslt >= 0 && ProcParams.hRsltsLociFile != -1)
{
gDiagnostics.DiagOut(eDLInfo,gszProcName,"Els Output: %d PreMerge: %d PostMerge: %d FilterUnderLen: %d FilterOverLen: %d",
ProcParams.NumMergedAccepted,ProcParams.NumUnmergedEls,ProcParams.NumMergedEls,ProcParams.NumMergedFiltUnderLen,ProcParams.NumMergedFiltOverLen);
}
CleanupResources(&ProcParams);
return(Rslt > 0 ? 0 : Rslt);
}