void updatePMLEFieldUtilEz(int xStart, int xEnd, int yStart, int yEnd, int zStart, int zEnd, int xBound, int yBound, int zBound, pmlConstStruct cx[], pmlConstStruct cy[], pmlConstStruct cz[], int n){
int i, j, k; // These are the indexes
int x,y,z;// There are indexes for the pmlConstStruct indexs
long p;
int m;
double dzStore;
double eps;
for (i=xStart;i<xEnd+1;i++){
x = abs(xBound - i)%PML_LAYERS;
for (j=yStart;j<yEnd+1;j++){
y = abs(yBound - j)%PML_LAYERS;
for (k=zStart;k<zEnd+1;k++){
z = abs(zBound - k)%PML_LAYERS;
p = PMLINDEX(i,j,k);
dzStore = DZ(p);
m = MATERIALINDEX(i,j,k);
eps = EPSR(m)*EPSNOT;
DZ(p) = cx[x].c1*DZ(p) + cx[x].c2*(HY(i,j,k) - HY(i-1,j,k) - HX(i,j,k) + HX(i,j-1,k) - JSZ(m));
EZ(i,j,k) = cy[y].c3*EZ(i,j,k) + cy[y].c4*(cz[z].c5*DZ(p)-cz[z].c6*dzStore)/eps;
}}} // end for
}// end updatePMLEFieldUtilEz
void updatePMLHFieldUtilAll(int xStart, int xEnd, int yStart, int yEnd, int zStart, int zEnd, int xBound, int yBound, int zBound, pmlConstStruct cx[], pmlConstStruct cy[], pmlConstStruct cz[], int n){
int i, j, k; // These are the indexes
int x,y,z;// There are indexes for the pmlConstStruct indexs
long p;
int m;
double bxStore, byStore, bzStore;
double mu;
// Either this, or make cOnes a bigger array with number of elements which are the max of xLen, yLen, zLen
for (i=xStart;i<xEnd+1;i++){
x = abs(xBound - i)%PML_LAYERS;
for (j=yStart;j<yEnd+1;j++){
y = abs(yBound - j)%PML_LAYERS;
for (k=zStart;k<zEnd+1;k++){
z = abs(zBound - k)%PML_LAYERS;
p = PMLINDEX(i,j,k);
bxStore = BX(p);
byStore = BY(p);
bzStore = BZ(p);
mu = MUR(m)*MUNOT;
BX(p) = cy[y].c1*BX(p) + cy[y].c2*(EY(i,j,k+1) - EY(i,j,k) + EZ(i,j,k) - EZ(i,j+1,k) - MSX(m));
HX(i,j,k) = cz[z].c3*HX(i,j,k) + cz[z].c4*(cx[x].c5*BX(p)-cx[x].c6*bxStore)/mu;
BY(p) = cz[z].c1*BY(p) + cz[z].c2*(EZ(i+1,j,k) - EZ(i,j,k) + EX(i,j,k) - EX(i,j,k+1) - MSY(m));
HY(i,j,k) = cx[x].c3*HY(i,j,k) + cx[x].c4*(cy[y].c5*BY(p)-cy[y].c6*byStore)/mu;
BZ(p) = cx[x].c1*BZ(p) + cx[x].c2*(EX(i,j+1,k) - EX(i,j,k) + EY(i,j,k) - EY(i+1,j,k) - MSZ(m));
HZ(i,j,k) = cy[y].c3*HZ(i,j,k) + cy[y].c4*(cz[z].c5*BZ(p)-cz[z].c6*bzStore)/mu;
}}} // end for
}// end updatePMLHFieldUtilAll
static void ATATimingManager_Quantize(ATATiming* pATATimingS, ATATiming* pATATimingR, unsigned uiTiming, unsigned uiUDMATiming)
{
pATATimingR->usSetup = EZ(pATATimingS->usSetup * 1000, uiTiming) ;
pATATimingR->usAct8b = EZ(pATATimingS->usAct8b * 1000, uiTiming) ;
pATATimingR->usRec8b = EZ(pATATimingS->usRec8b * 1000, uiTiming) ;
pATATimingR->usCyc8b = EZ(pATATimingS->usCyc8b * 1000, uiTiming) ;
pATATimingR->usAct = EZ(pATATimingS->usAct * 1000, uiTiming) ;
pATATimingR->usRec = EZ(pATATimingS->usRec * 1000, uiTiming) ;
pATATimingR->usCyc = EZ(pATATimingS->usCyc * 1000, uiTiming) ;
pATATimingR->usUDMA = EZ(pATATimingS->usUDMA * 1000, uiUDMATiming) ;
}
static void ide_timing_quantize(struct ide_timing *t, struct ide_timing *q,
int T, int UT)
{
q->setup = EZ(t->setup * 1000, T);
q->act8b = EZ(t->act8b * 1000, T);
q->rec8b = EZ(t->rec8b * 1000, T);
q->cyc8b = EZ(t->cyc8b * 1000, T);
q->active = EZ(t->active * 1000, T);
q->recover = EZ(t->recover * 1000, T);
q->cycle = EZ(t->cycle * 1000, T);
q->udma = EZ(t->udma * 1000, UT);
}
//calculate M and B
static inline void calcMB()
{
//todo code of EZ(i, j+1) and EZ(i,j) may be reverse ?
for(int i=1; i<N_PX-1; i++){
for(int j=1; j<N_PY-1; j++){
double complex nowMx = MX(i,j);
Mx[ind(i,j)] = CMX(i,j)*MX(i,j) - CMXEZ(i,j)*(EZ(i,j+1) - EZ(i,j));
Bx[ind(i,j)] = CBX(i,j)*BX(i,j) + CBXMX1(i,j)*MX(i,j) - CBXMX0(i,j)*nowMx;
}
}
//todo code of EZ(i+1, j) and EZ(i,j)
for(int i=1; i<N_PX-1; i++){
for(int j=1; j<N_PY-1; j++){
double complex nowMy = MY(i,j);
My[ind(i,j)] = CMY(i,j)*MY(i,j) - CMYEZ(i,j)*(-EZ(i+1,j) + EZ(i,j));
By[ind(i,j)] = CBY(i,j)*BY(i,j) + CBYMY1(i,j)*MY(i,j) - CBYMY0(i,j)*nowMy;
}
}
}
void updatePMLEFieldUtilAll(int xStart, int xEnd, int yStart, int yEnd, int zStart, int zEnd, int xBound, int yBound, int zBound, pmlConstStruct cx[], pmlConstStruct cy[], pmlConstStruct cz[], int n){
int i, j, k; // These are the indexes
int x,y,z;// There are indexes for the pmlConstStruct indexs
long p;
int m;
double dxStore, dyStore, dzStore;
double eps;
// Either this, or make cOnes a bigger array with number of elements which are the max of xLen, yLen, zLen
for (i=xStart;i<xEnd+1;i++){
x = abs(xBound - i)%PML_LAYERS;
for (j=yStart;j<yEnd+1;j++){
y = abs(yBound - j)%PML_LAYERS;
for (k=zStart;k<zEnd+1;k++){
z = abs(zBound - k)%PML_LAYERS;
//printf("(i,j,k) (%d, %d, %d), (x,y,z) (%d,%d,%d)\n", i,j,k,x,y,z);
p = PMLINDEX(i,j,k);
dxStore = DX(p);
dyStore = DY(p);
dzStore = DZ(p);
m = MATERIALINDEX(i,j,k);
eps = EPSR(m)*EPSNOT;
DX(p) = cy[y].c1*DX(p) + cy[y].c2*(HZ(i,j,k) - HZ(i,j-1,k) - HY(i,j,k) + HY(i,j,k-1) - JSX(m));
EX(i,j,k) = cz[z].c3*EX(i,j,k) + cz[z].c4*(cx[x].c5*DX(p)-cx[x].c6*dxStore)/eps;
DY(p) = cz[z].c1*DY(p) + cz[z].c2*(HX(i,j,k) - HX(i,j,k-1) + HZ(i-1,j,k) - HZ(i,j,k) - JSY(m));
EY(i,j,k) = cx[x].c3*EY(i,j,k) + cx[x].c4*(cy[y].c5*DY(p)-cy[y].c6*dyStore)/eps;
DZ(p) = cx[x].c1*DZ(p) + cx[x].c2*(HY(i,j,k) - HY(i-1,j,k) - HX(i,j,k) + HX(i,j-1,k) - JSZ(m));
EZ(i,j,k) = cy[y].c3*EZ(i,j,k) + cy[y].c4*(cz[z].c5*DZ(p)-cz[z].c6*dzStore)/eps;
}}} // end for
}// end updatePMLEFieldUtilAll
double mapping(TString SimData, TString ExpData, TString background = "nobackground"){
/////////////////////// OPEN INPUT AND OUTPUT FILES ///////////////////////
// open the data file
ifstream input_exp;
TString fullpathtofile = Form("%s",ExpData.Data() ) ;
if(gVerbose>0) cout<<"opening file : |"<<ExpData<< "| ... ";
input_exp.open( ExpData.Data() );
if (!input_exp) { cout<<"problem opening experimental data file " << fullpathtofile << endl; exit(-1);}
else if(gVerbose>0) cout<<"Experimental file is opened "<<endl;
//open the field files from comsol
ifstream input_sim;
fullpathtofile = Form("%s",SimData.Data() ) ;
if(gVerbose>0) cout<<"opening file : |"<<SimData<< "| ... ";
input_sim.open(SimData.Data() ) ;
if(!input_sim.is_open()) {
if(gVerbose>0) cout<<"problem opening simulation data file |"<< fullpathtofile <<"|"<< endl;
SimData.ReplaceAll("./input/","");
fullpathtofile = Form("/data1/moukaddam/MagnetSimulation/%s",SimData.Data()) ;
if(gVerbose>0) cout<<"trying main directory, opening file : |"<<fullpathtofile<< "| ... ";
input_sim.open(fullpathtofile.Data() ) ; // from local input if not go seek in data 1
if (!input_sim.is_open()) { cout<<"problem opening simulation data file |"<< fullpathtofile <<"|"<< endl<<endl; exit(-1);}
}
else if(gVerbose>0) cout<<" Simulation file " << fullpathtofile << " is opened " <<endl;
// create root output file
ExpData.ReplaceAll("./input/",""); ExpData.ReplaceAll(".dat",""); ExpData.ReplaceAll(".txt","");
SimData.ReplaceAll("./input/",""); SimData.ReplaceAll(".dat",""); SimData.ReplaceAll(".txt","");
TString filename = "./output/compare_" + ExpData + "_" + SimData + ".root";
TFile outputFile(filename,"RECREATE");
TDirectory *dirquad[4] ;
dirquad[0] = outputFile.mkdir("Quad_1");
dirquad[1] = outputFile.mkdir("Quad_2");
dirquad[2] = outputFile.mkdir("Quad_3");
dirquad[3] = outputFile.mkdir("Quad_4");
//Read the simulation file from comsol
// dump the first lines from the top
string s_buffer="buffer";
Int_t d_buffer=-1;
Int_t counter1=0; // counter on the first lines
Int_t counter2=0; // counter on the first lines
// read the first lines
Int_t dimX, dimY, dimZ;
input_sim>>dimX>>dimY>>dimZ;
if(gVerbose>0) cout<<"\nSimulated Field Table dimensions X : "<<dimX<<" Y : "<<dimY<<" Z : "<<dimZ<<endl;
dimX=dimX+10;
dimY=dimY+10;
dimZ=dimZ+10;
TH3D *f3DHistBx = new TH3D("f3DHistBX", "Bx" , dimX,-dimX, dimX, dimY,-dimY, dimY, dimZ, -dimZ, dimZ);
TH3D *f3DHistBy = new TH3D("f3DHistBY", "By" , dimX,-dimX, dimX, dimY,-dimY, dimY, dimZ, -dimZ, dimZ);
TH3D *f3DHistBz = new TH3D("f3DHistBZ", "Bz" , dimX,-dimX, dimX, dimY,-dimY, dimY, dimZ, -dimZ, dimZ);
TH3D *f3DHistBmag = new TH3D("f3DHistBMAG", "Bmag" , dimX,-dimX, dimX, dimY,-dimY, dimY, dimZ, -dimZ, dimZ);
TH3D *f3DHistBtan = new TH3D("f3DHistBTAN", "Btan" , dimX,-dimX, dimX, dimY,-dimY, dimY, dimZ, -dimZ, dimZ);
TH3D *f3DHistBdiff = new TH3D("f3DHistBDIFF", "Bdiff", dimX,-dimX, dimX, dimY,-dimY, dimY, dimZ, -dimZ, dimZ);
d_buffer=-1;
while (d_buffer != 0 && counter1< 15){ // find a solution for this with do while
input_sim>>d_buffer>>s_buffer;
counter2++;
}
getline(input_sim,s_buffer);
if(gVerbose>0) cout<< " Number of skipped lines in comsol file : " <<counter2 << " last line content : "<<s_buffer<<endl;
// read and fill
SimulationPoint* SimPoint = new SimulationPoint();
Double_t X(0), Y(0), Z(0), EX(-100), EY(-100), EZ(-100), Perm(0);
Double_t BX(0), BY(0), BZ(0);
Int_t line=0;
while ( !input_sim.eof() ) {
//Clear parameters
SimPoint->ClearParameters();
// Choose format
if(counter2<9) input_sim >> X >> Y >> Z >> BX >> BY >> BZ >> Perm ;
else input_sim >> X >> Y >> Z >> BX >> BY >> BZ >> EX >> EY >> EZ >> Perm ;
SimPoint->ReadLineAndTreat(X,Y,Z,BX,BY,BZ,EX,EY,EZ,Perm );
//SimPoint->Show();
// fill in TH3D all the simulation data
Int_t binNumber = f3DHistBx->FindBin(X,Y,Z);
f3DHistBx->SetBinContent(binNumber,BX);
f3DHistBy->SetBinContent(binNumber,BY);
f3DHistBz->SetBinContent(binNumber,BZ);
f3DHistBmag->SetBinContent(binNumber,SimPoint->fBFieldMag);
f3DHistBtan->SetBinContent(binNumber,SimPoint->fBFieldTan);
f3DHistBdiff->SetBinContent(binNumber,SimPoint->fBFieldDiff); //fBFieldMag-fBFieldTan
//count the lines for inspection
line++;
if (line%5000 == 0) {
if(gVerbose>0) printf("\r @line : %d ... Still reading ...",line);
if(gVerbose>1) cout<< X<<" "<<Y <<" "<<Z <<" "<<BX <<" "<<BY<<" "<<BZ <<" "<< EX<<" "<< EY<<" "<< EZ<<" "<< Perm<<endl ;
}
}