int main(int argc, char const ** argv)
{
Options<Global> globalOptions;
int ret = parseOptions(globalOptions, argc, argv);
if (ret)
return ret;
if (globalOptions.selectedCommand == COMMAND_BUILD_STANDARD) {
CommandLineParser parser;
setUpCommandLineParser(parser, BuildGoldStandard());
Options<BuildGoldStandard> options;
int ret = parseCommandLineAndCheck(options, parser, argc, argv);
if (options.showHelp)
return 0;
if (ret != 0)
return ret;
return buildGoldStandard(options);
} else if (globalOptions.selectedCommand == COMMAND_EVALUATE) {
CommandLineParser parser;
setUpCommandLineParser(parser, EvaluateResults());
Options<EvaluateResults> options;
int ret = parseCommandLineAndCheck(options, parser, argc, argv);
if (options.showHelp)
return 0;
if (ret != 0)
return ret;
return evaluateReadMapperResult(options);
} else {
SEQAN_ASSERT_FAIL("Invalid reads type!");
}
return 0;
}
PRIntn main(PRIntn argc, char *argv[])
{
PLOptStatus os;
PLOptState *opt = PL_CreateOptState(argc, argv, "dhp:P:a:A:i:s:t:");
while (PL_OPT_EOL != (os = PL_GetNextOpt(opt)))
{
if (PL_OPT_BAD == os) continue;
switch (opt->option)
{
case 'a': /* arena Min size */
arenaMin = atol( opt->value );
break;
case 'A': /* arena Max size */
arenaMax = atol( opt->value );
break;
case 'p': /* pool Min size */
poolMin = atol( opt->value );
break;
case 'P': /* pool Max size */
poolMax = atol( opt->value );
break;
case 'i': /* Iterations in stress tests */
stressIterations = atol( opt->value );
break;
case 's': /* storage to get per iteration */
maxAlloc = atol( opt->value );
break;
case 't': /* Number of stress threads to create */
stressThreads = atol( opt->value );
break;
case 'd': /* debug mode */
debug_mode = 1;
break;
case 'h': /* help */
default:
Help();
} /* end switch() */
} /* end while() */
PL_DestroyOptState(opt);
srand( (unsigned)time( NULL ) ); /* seed random number generator */
tLM = PR_NewLogModule("testcase");
#if 0
ArenaAllocate();
ArenaGrow();
#endif
MarkAndRelease();
Stress();
return(EvaluateResults());
} /* end main() */