// use smartcull on all charges
void CMSPeak::CullAll(const CMSSearchSettings& Settings)
{
int iCharges;
SetPeakLists()[eMSPeakListOriginal]->Sort(eMSPeakListSortIntensity);
CullChargeAndWhich(Settings);
// make the high intensity list
// todo: need to look at all of the filtered lists to pick out peaks
// found in all filtered list -- otherwise you'll get precursors
// also, SmartCull has to adjust for charge!
iCharges = GetNumCharges() - 1;
int Which = GetWhich(GetCharges()[iCharges]);
CMZI *Temp = new CMZI [SetPeakLists()[Which]->GetNum()]; // temporary holder
copy(SetPeakLists()[Which]->GetMZI(), SetPeakLists()[Which]->GetMZI() +
SetPeakLists()[Which]->GetNum(), Temp);
sort(Temp, Temp + SetPeakLists()[Which]->GetNum(), CMZICompareIntensity());
if(SetPeakLists()[Which]->GetNum() > Settings.GetTophitnum())
SetPeakLists()[eMSPeakListTop]->CreateLists(Settings.GetTophitnum());
else
SetPeakLists()[eMSPeakListTop]->CreateLists(SetPeakLists()[Which]->GetNum());
copy(Temp, Temp + SetPeakLists()[eMSPeakListTop]->GetNum(),
SetPeakLists()[eMSPeakListTop]->GetMZI());
SetPeakLists()[eMSPeakListTop]->Sort(eMSPeakListSortMZ);
delete [] Temp;
}
void CMSPeak::CullChargeAndWhich(const CMSSearchSettings& Settings)
{
int iCharges;
for(iCharges = 0; iCharges < GetNumCharges(); iCharges++){
int TempLen(0);
CMZI *Temp = new CMZI [GetPeakLists()[eMSPeakListOriginal]->GetNum()]; // temporary holder
copy(SetPeakLists()[eMSPeakListOriginal]->GetMZI(),
SetPeakLists()[eMSPeakListOriginal]->GetMZI() +
GetPeakLists()[eMSPeakListOriginal]->GetNum(), Temp);
TempLen = GetPeakLists()[eMSPeakListOriginal]->GetNum();
bool ConsiderMultProduct(false);
CullPrecursor(Temp,
TempLen,
CalcPrecursorMass(GetCharges()[iCharges]),
GetCharges()[iCharges],
Settings.GetPrecursorcull() != 0,
Settings.GetChargehandling().GetNegative());
//#define DEBUG_PEAKS1
#ifdef DEBUG_PEAKS1
{
sort(Temp, Temp+TempLen , CMZICompare());
ofstream FileOut("afterprecurse.dta");
xWrite(FileOut, Temp, TempLen);
sort(Temp, Temp+TempLen , CMZICompareIntensity());
}
#endif
if(GetCharges()[iCharges] >= ConsiderMult) ConsiderMultProduct = true;
SmartCull(Settings,
Temp, TempLen, ConsiderMultProduct);
// make the array of culled peaks
EMSPeakListTypes Which = GetWhich(GetCharges()[iCharges]);
SetPeakLists()[Which]->CreateLists(TempLen);
copy(Temp, Temp+TempLen, SetPeakLists()[Which]->GetMZI());
SetPeakLists()[Which]->Sort(eMSPeakListSortIntensity);
SetPeakLists()[Which]->Rank();
SetPeakLists()[Which]->Sort(eMSPeakListSortMZ);
delete [] Temp;
}
}
void Corpse::MoveItemToCorpse(Client *client, ItemInst *inst, int16 equipSlot, std::list<uint32> &removedList)
{
AddItem(
inst->GetItem()->ID,
inst->GetCharges(),
equipSlot,
inst->GetAugmentItemID(0),
inst->GetAugmentItemID(1),
inst->GetAugmentItemID(2),
inst->GetAugmentItemID(3),
inst->GetAugmentItemID(4),
inst->GetAugmentItemID(5),
inst->IsAttuned()
);
removedList.push_back(equipSlot);
while (true) {
if (!inst->IsType(ItemClassContainer)) { break; }
if (equipSlot < EmuConstants::GENERAL_BEGIN || equipSlot > MainCursor) { break; }
for (auto sub_index = SUB_BEGIN; sub_index < EmuConstants::ITEM_CONTAINER_SIZE; ++sub_index) {
int16 real_bag_slot = Inventory::CalcSlotId(equipSlot, sub_index);
auto bag_inst = client->GetInv().GetItem(real_bag_slot);
if (bag_inst == nullptr) { continue; }
AddItem(
bag_inst->GetItem()->ID,
bag_inst->GetCharges(),
real_bag_slot,
bag_inst->GetAugmentItemID(0),
bag_inst->GetAugmentItemID(1),
bag_inst->GetAugmentItemID(2),
bag_inst->GetAugmentItemID(3),
bag_inst->GetAugmentItemID(4),
bag_inst->GetAugmentItemID(5),
bag_inst->IsAttuned()
);
removedList.push_back(real_bag_slot);
client->DeleteItemInInventory(real_bag_slot, 0, true, false);
}
break;
}
client->DeleteItemInInventory(equipSlot, 0, true, false);
}
void Corpse::MoveItemToCorpse(Client *client, EQEmu::ItemInstance *inst, int16 equipSlot, std::list<uint32> &removedList)
{
AddItem(
inst->GetItem()->ID,
inst->GetCharges(),
equipSlot,
inst->GetAugmentItemID(0),
inst->GetAugmentItemID(1),
inst->GetAugmentItemID(2),
inst->GetAugmentItemID(3),
inst->GetAugmentItemID(4),
inst->GetAugmentItemID(5),
inst->IsAttuned()
);
removedList.push_back(equipSlot);
while (true) {
if (!inst->IsClassBag()) { break; }
if (equipSlot < EQEmu::legacy::GENERAL_BEGIN || equipSlot > EQEmu::inventory::slotCursor) { break; }
for (int16 sub_index = EQEmu::inventory::containerBegin; sub_index < EQEmu::inventory::ContainerCount; ++sub_index) {
int16 real_bag_slot = EQEmu::InventoryProfile::CalcSlotId(equipSlot, sub_index);
auto bag_inst = client->GetInv().GetItem(real_bag_slot);
if (bag_inst == nullptr) { continue; }
AddItem(
bag_inst->GetItem()->ID,
bag_inst->GetCharges(),
real_bag_slot,
bag_inst->GetAugmentItemID(0),
bag_inst->GetAugmentItemID(1),
bag_inst->GetAugmentItemID(2),
bag_inst->GetAugmentItemID(3),
bag_inst->GetAugmentItemID(4),
bag_inst->GetAugmentItemID(5),
bag_inst->IsAttuned()
);
removedList.push_back(real_bag_slot);
client->DeleteItemInInventory(real_bag_slot, 0, true, false);
}
break;
}
client->DeleteItemInInventory(equipSlot, 0, true, false);
}
