static int openXMGrace(cvodeData_t *data) { double maxY; /* Open XMGrace */ if ( !GraceIsOpen() ) { GraceRegisterErrorFunction(grace_error); /* Start Grace with a buffer size of 2048 and open the pipe */ if ( GraceOpen(2048) == -1 ) { fprintf(stderr, "Can't run Grace. \n"); return 1; } else if ( GraceIsOpen() ) { maxY = 1.0; /* "with g%d" might become useful, when printing multiple graphs into one XMGrace subprocess. */ /* GracePrintf("with g%d", data->results->xmgrace); */ GracePrintf("world xmax %g", data->currenttime); GracePrintf("world ymax %g", 1.25*maxY); GracePrintf("xaxis tick major %g", data->currenttime/10); /* GracePrintf("xaxis tick minor %d", (int) data->currenttime/100); */ GracePrintf("yaxis tick major %g", (1.25*maxY)/12.5 ); GracePrintf("xaxis label font 4"); GracePrintf("xaxis label \"time\""); GracePrintf("xaxis ticklabel font 4"); GracePrintf("xaxis ticklabel char size 0.7"); GracePrintf("yaxis label font 4"); GracePrintf("yaxis label \"concentration\""); GracePrintf("yaxis ticklabel font 4"); GracePrintf("yaxis ticklabel char size 0.7"); if ( Model_isSetName(data->model->simple) ) GracePrintf("subtitle \"%s\"", Model_getName(data->model->simple)); else if ( Model_isSetId(data->model->simple) ) GracePrintf("subtitle \"%s\"", Model_getId(data->model->simple)); else GracePrintf("subtitle \"model has no name/id\""); GracePrintf("subtitle font 8"); } } else { fprintf(stderr, "Please close XMGrace first.\n"); return 1; } return 0; }
void ScanGraceinit(){ /* set up to plot data for all channels, different color for upper and lower thresholds and sca1 and sca2. */ int i,j; char str1[256]; #ifdef DEBUG printf("entering ScanGraceinit()\n"); #endif if (GraceIsOpen()) GraceClose(); GraceOpen(32768); GracePrintf("page size 450,350"); GracePrintf("arrange(2,2,0.1,0.1,0.1)"); GracePrintf("redraw"); for(j=0;j<4;j++){ sprintf(str1,"g%i on",j); GracePrintf(str1); sprintf(str1,"focus g%i",j); GracePrintf(str1); GracePrintf("xaxis ticklabel char size 0.6"); GracePrintf("yaxis ticklabel char size 0.6"); for(i=0;i<NPLT;i++){ sprintf(str1,"g%i.s%i symbol %i",j,i,j+1); GracePrintf(str1); } } #ifdef DEBUG printf("leaving ScanGraceinit()\n"); #endif }
void FitGraceinit(){ /* set up to plot edge position vs edge width for all channels, different color for upper and lower thresholds and sca1 and sca2. */ int j; char str1[256]; if(GraceIsOpen()){ GraceClose(); } GraceOpen(32768); GracePrintf("page size 500,400"); GracePrintf("redraw"); GracePrintf("g0 on"); GracePrintf("focus g0"); GracePrintf("xaxis ticklabel char size 0.6"); GracePrintf("yaxis ticklabel char size 0.6"); for(j=0;j<4;j++){ sprintf(str1,"s%i on",j); GracePrintf(str1); sprintf(str1,"s%i symbol %i",j,j+1); GracePrintf(str1); sprintf(str1,"s%i line type 0",j); GracePrintf(str1); } #ifdef DEBUG printf("leaving FitGraceinit()\n"); #endif }
void grace_draw_plot (int npoints, Array x, Array y, char *yname, char *timestr, char *legend, double xmin, double xmax, double ymin, double ymax) { int i; int xxlen=npoints; char xstr[128], ystr[128]; // Note grSets is now the index of this plot set. // Will be incremented at the end to indicate the number of sets drawn if (!grInited) { fprintf (stderr, "Error: grace draw was called before init\n"); return; } // printf("grace_draw_plot %d: %s\n", grSets, yname); // printf(" x: %lf - %lf\n y: %lf - %lf\n", // xmin, xmax, ymin, ymax); // If the whole data is undefined, do not produce image (would be empty) if ( Array_is_data_undef_all(y) ) { printf("All data is undef for this variable: %s %s\n", yname, timestr); return; } // recalc min/max if (xmin < grXMin) grXMin = xmin; if (xmax > grXMax) grXMax = xmax; if (ymin < grYMin) grYMin = ymin; if (ymax > grYMax) grYMax = ymax; if (!grSubtitleGiven) GracePrintf("subtitle \"T=%s, [%6.2le:%6.2le],[%6.2le:%6.2le]\"",timestr,xmin,xmax,ymin,ymax); for (i = 0; i < xxlen && GraceIsOpen(); i++) { Array_strvalue(x, i, xstr); Array_strvalue(y, i, ystr); GracePrintf("g0.s%d point %s, %s",grSets,xstr,ystr); } GracePrintf("s%d line linewidth 4.0", grSets); GracePrintf("s%d line color %d", grSets, grSets%15+1); if (legend != NULL) GracePrintf("s%d legend \"%s\"", grSets, legend); //GracePrintf("redraw"); //GracePrintf("print to \"i%d.png\"",grSets); //GracePrintf("print"); grSets++; }
void grace_save_plot (char *outputpath, bool save_to_agr) { int i; double yedge, xedge; // 2% of the ymax-ymin, xmax-xmin, resp. if (!grInited) return; // silently, so no warning if only 2D plots were done in main //printf("grace_save_plot: %s\n", outputpath); if (grSets > 0) { // draw the graphs now (if we have any data) // add 2% edge to the min/max values yedge = (grYMax-grYMin)*0.02; xedge = (grXMax-grXMin)*0.02; // if function is constant, yedge is zero and plot would be empty if (yedge == 0) yedge = grYMax/2.0 + 0.55; //printf("\n x: %lf - %lf\n y: %lf - %lf\n xedge: %lf\n yedge: %lf\n", // grXMin, grXMax, grYMin, grYMax, xedge, yedge); //GracePrintf("autoscale"); GracePrintf("world xmin %le", grXMin-xedge); GracePrintf("world xmax %le", grXMax+xedge); GracePrintf("world ymin %le", grYMin-yedge); GracePrintf("world ymax %le", grYMax+yedge); GracePrintf("autoticks"); GracePrintf("redraw"); } //if (save_to_png) { GracePrintf("print to \"%s.png\"",outputpath); GracePrintf("print"); if (print_provenance) printf("--ProvenanceInfo name=\"%s.png\" size=0 date=0\n", outputpath); //} if (GraceIsOpen() && save_to_agr) { /* Tell Grace to save the data */ GracePrintf("saveall \"%s.agr\"",outputpath); } // clear plot (for next init, draws, save cycle) for (i=0; i<grSets; i++) { GracePrintf("kill g0.s%d", i); } grInited = false; }
void grace_plot (char *outputpath, char *title, char *subtitle, char *xname, char *yname, int npoints, Array x, Array y, char *timestr, double xmin, double xmax, double ymin, double ymax, bool save_to_agr) { int i; double yedge, xedge; // 2% of the ymax-ymin, xmax-xmin, resp. int xxlen=npoints; char xstr[128], ystr[128]; if (!grace_started) grace_start(); // If the whole data is undefined, do not produce image (would be empty) if ( Array_is_data_undef_all(y) ) { printf("All data is undef for this variable: %s %s\n", yname, timestr); return; } // now just plot these in grace! yedge = (ymax-ymin)*0.02; xedge = (xmax-xmin)*0.02; // if function is constant, yedge is zero and plot would be empty if (yedge == 0) yedge = ymax/2.0 + 0.55; //printf("\n x: %lf - %lf\n y: %lf - %lf\n xedge: %lf\n yedge: %lf\n", // xmin, xmax, ymin, ymax, xedge, yedge); /* Send some initialization commands to Grace */ GracePrintf("device \"PNG\" OP \"compression:9\""); //GracePrintf("device \"JPEG\" OP \"quality:50\""); GracePrintf("hardcopy device \"PNG\""); //GracePrintf("hardcopy device \"JPEG\""); //GracePrintf("page size 360,300"); GracePrintf("page size %d,%d", grimgSizeX, grimgSizeY); /* GracePrintf("xaxis tick off"); */ /* GracePrintf("yaxis tick off"); */ /* GracePrintf("xaxis ticklabel off"); */ /* GracePrintf("yaxis ticklabel off"); */ /*GracePrintf("view 0.137821, 0.051282, 1.157051, 0.868590");*/ GracePrintf("view 0.15, 0.051282, 1.157051, 0.868590"); /* GracePrintf("s0 on"); */ /* GracePrintf("s0 symbol 1"); */ /* GracePrintf("s0 symbol size 0.3"); */ /* GracePrintf("s0 symbol fill pattern 1"); */ /* GracePrintf("s1 on"); */ /* GracePrintf("s1 symbol 1"); */ /* GracePrintf("s1 symbol size 0.3"); */ /* GracePrintf("s1 symbol fill pattern 1"); */ GracePrintf("title size 1.4"); GracePrintf("xaxis ticklabel char size 1.36"); GracePrintf("yaxis ticklabel char size 1.36"); GracePrintf("title \"%s\"",title); if (subtitle) GracePrintf("subtitle \"%s\"",subtitle); else GracePrintf("subtitle \"T=%s, [%6.2le:%6.2le],[%6.2le:%6.2le]\"",timestr,xmin,xmax,ymin,ymax); //GracePrintf("xaxis label \"%s\"",xname); //GracePrintf("yaxis label \"%s\"",yname); GracePrintf("map color 0 to (%d,%d,%d), \"background\"", grBackgroundRGB[0], grBackgroundRGB[1], grBackgroundRGB[2]); GracePrintf("map color 1 to (%d,%d,%d), \"foreground\"", grForegroundRGB[0], grForegroundRGB[1], grForegroundRGB[2]); GracePrintf("background color 0"); for (i = 0; i < xxlen && GraceIsOpen(); i++) { Array_strvalue(x, i, xstr); Array_strvalue(y, i, ystr); GracePrintf("g0.s0 point %s, %s",xstr,ystr); } //GracePrintf("autoscale"); GracePrintf("world xmin %le", xmin-xedge); GracePrintf("world xmax %le", xmax+xedge); GracePrintf("world ymin %le", ymin-yedge); GracePrintf("world ymax %le", ymax+yedge); GracePrintf("autoticks"); GracePrintf("s0 line linewidth 4.0"); GracePrintf("xaxis tick major linewidth 3.0"); GracePrintf("yaxis tick major linewidth 3.0"); GracePrintf("frame linewidth 2.0"); GracePrintf("xaxis bar linewidth 3.0"); GracePrintf("redraw"); //if (save_to_png) { GracePrintf("print to \"%s.png\"",outputpath); GracePrintf("print"); if (print_provenance) printf("--ProvenanceInfo name=\"%s.png\" size=0 date=0\n", outputpath); //} if (GraceIsOpen() && save_to_agr) { /* Tell Grace to save the data */ GracePrintf("saveall \"%s.agr\"",outputpath); } GracePrintf("kill g0.s0"); }
int main(int argc, char** argv) { //reading data values int fd; int ctr_numhits=0; int num_records=0; ssize_t numbytes; int compare = 1; off_t offset = 0; char error_buf[ERROR_BUF_SIZE]; int headersize=DR_HEAER_SIZE; int next_buffer_size=1; int datasize=next_buffer_size; char *header = (char *) malloc(DR_HEAER_SIZE); char *data = (char *) malloc(MAX_DATA_SIZE); //plotting variables int maxbin = 0; int maxvalue = 0; int xmax = (int) BINS; //data values int finebin = 0 ; int bytesread = 1; int value; int pfb_bin = 0; int fft_bin = 0; int fft_bin_loc= 0; int over_thresh = 0; int blank = 0; int event = 0; unsigned int pfb_fft_power = 0; unsigned int fields; long int i = 0; int j = 0; int k = 0; int ctr = 0; int counter=0; int beamnum = 0; double fstep,fscoarse = 0.0; double rfmin,rfctr = 0.0; double freq_fft_bin = 0.0; double bary_freq = 0.0; char rawfile[] = "largefile_MMMDDYYYY_HHMM"; int gooddata=1; int goodfreq=1; long int fileposition=0; //position in input file long int filesize; //position in input file FILE *fout; //create buffers struct spectral_data spectra; struct data_vals *data_ptr; data_ptr = (struct data_vals *)data; //create header structure struct setidata frame; // create time structure tm hittime; double spec_time; // create SQL structures unsigned long int specid; //strcpy(def_password, argv[2]); char sqlquery[1024]; char hitquery[1024]; // file variables FILE *datatext; // connect to mySQL database dbconnect(); #ifdef GRACE // Initialize grace plotting windows grace_init(); // grace_open_deux(8192); // grace_init_deux(maxbin,maxvalue,xmax); #endif //check for error opening file fd = open(argv[1], O_RDONLY); if(fd==-1) { snprintf(error_buf, ERROR_BUF_SIZE, "Error opening file %s", argv[1]); perror(error_buf); return 0; } //if we can't find a header, nothing to be done if(find_first_header(fd)==-1) return 0; //read header //make sure we are reading as much data as expected, otherwise might be at eof while(headersize==DR_HEAER_SIZE && datasize==next_buffer_size) { k = k+1; //reset dataflag to "good" gooddata=1; // read in the header data headersize = read(fd, (void *) header, DR_HEAER_SIZE); fileposition+=headersize; // int iii=0; // for(iii=0; iii<DR_HEAER_SIZE; iii++) // printf("%c", header[iii]); //get the size of spectra and parse header values next_buffer_size = read_header(header); read_header_data(header, &frame); //Read in data datasize = read(fd, (void *) data, next_buffer_size); fileposition+=datasize; // printf("Buffersize, datasize: %d %d\n", next_buffer_size, datasize); // int iii=0; // printf("Printing data header\n"); // for(iii=0; iii<datasize; iii++) // printf("%c", data[iii]); //Parse data header beamnum = read_beam(data, datasize); read_data_header(data, &frame); //Convert to RA and Dec scramAzZatoRaDec(frame.agc_systime, frame.agc_time, frame.agc_az, frame.agc_za, frame.alfashm_alfamotorposition, beamnum/2, 0, &frame.ra, &frame.dec, &hittime); get_filename(argv[1], rawfile); // printf("%s\n", rawfile); //Calculate MJD spec_time = time2mjd(frame.agc_systime, frame.agc_time); // creates query to config table // set digital_lo and board to be constants, because we figured we knew // what they were and that they weren't changing char bid[] = "B2"; sprintf(sqlquery, "INSERT INTO config (thrscale, thrlimit, fftshift, pfbshift, beamnum, obstime, ra, decl, digital_lo, board, AGC_SysTime, AGC_Time, AGC_Az, AGC_Za, AlfaFirstBias, AlfaSecondBias, AlfaMotorPosition, IF1_rfFreq, synI_freqHz, IF1_synI_ampDB, IF1_if1FrqMHz, IF1_alfaFb, TT_TurretEncoder, TT_TurretDegrees, rawfile) VALUES (%ld, %ld, %ld, %ld, %d, %lf, %lf, %lf, %ld, '%s', %ld, %ld, %lf, %lf, %ld, %ld, %lf, %9.1lf, %9.1lf, %ld, %lf, %ld, %ld, %lf, '%s')", frame.thrscale, frame.thrlimit, frame.fft_shift, frame.pfb_shift, beamnum, (double) ((int) spec_time), frame.ra, frame.dec, 200000000, bid, frame.agc_systime, frame.agc_time, frame.agc_az, frame.agc_za, frame.alfashm_alfafirstbias, frame.alfashm_alfasecondbias, frame.alfashm_alfamotorposition, frame.if1_rffreq, frame.if1_syni_freqhz_0, frame.if1_syni_ampdb_0, frame.if1_if1frqmhz, frame.if1_alfafb, frame.tt_turretencoder, frame.tt_turretdegrees, rawfile); #ifndef DEBUG // insert header data into serendipvv config table if (mysql_query(conn, sqlquery)) { fprintf(stderr, "Error inserting data into sql database... \n"); exiterr(3); } // saves specid to be inserted at index in other sql tables if ((res = mysql_store_result(conn))==0 && mysql_field_count(conn)==0 && mysql_insert_id(conn)!=0) { specid = (unsigned long int) mysql_insert_id(conn); } #endif #ifdef DEBUG printf("%s\n", sqlquery); printf("Spec id: %d\n", specid); #endif //doesn't do any bounds checking yet... spectra.numhits = read_data(data, datasize) - 4096; //printf("size of spectra %d\n",spectra.numhits); //header,data data_ptr = (struct data_vals *) (data+SETI_HEADER_SIZE_IN_BYTES); //======================== TEST FILE DATA DUMP ================ /* FILE *datafile; char dataf[100]; sprintf(dataf,"datafiles/datafile%d.dat",counter); datafile = fopen(dataf,"wb"); fwrite(data,spectra.numhits,1,(FILE *)datafile); fflush(datafile); fclose(datafile); */ //============================================== num_records = read_data(data,datasize); ctr_numhits=0; //create file spectraldata and print file header /* char filename[BUFSIZ]; sprintf(filename, "spectraldata%d", beamnum); datatext = fopen(filename,"w"); fprintf(datatext, "specnum,beamnum,coarsebin,coarsepower,hitpower,fftbin\n"); */ //Calc values for freq_topo calc //Freq chan resolution fstep = 200000000.0/134217728; fscoarse = 200000000.0/4096; //Center of the BEE2 bandpass rfctr = frame.if1_rffreq - 50000000.0; //Right edge of the last bin is the lowest freq //because the RF band is flipped in the IF // rfmin=rfctr-0.5*fscoarse; rfmin=rfctr+0.5*fscoarse; //Check to see if there are too many hits if(num_records>0.9*frame.thrlimit*4096) { gooddata=0; fprintf(stderr, "Data bad...more than %5.0lf hits.\n", 0.9*frame.thrlimit*4096); } //****OPEN FILE TO WRITE HITS TO fout=fopen("hits_list.txt", "w"); //============================ // LOOP OVER HITS //============================= for(i=0;i< num_records ;i++) { goodfreq=1; fields = ntohl(data_ptr->raw_data); fft_bin = slice(fields,15,0); pfb_bin = slice(fields,12,15); over_thresh = slice(fields,1,27); blank = slice(fields,3,28); event = slice(fields,1,31); pfb_fft_power = ntohl(data_ptr->overflow_cntr); //32.0 // pfb_fft_power = data_ptr->overflow_cntr; //32.0 //Rearrange the bins //1) Reorder the FFT output order //2) Reverse bins due to RF/IF flip pfb_bin = (pfb_bin + 2048) % 4096; // pfb_bin = 4096 - pfb_bin; pfb_bin = 4095 - pfb_bin; fft_bin = (fft_bin + 16384) % 32768; // fft_bin = 32768 - fft_bin; fft_bin = 32767 - fft_bin; fft_bin_loc = fft_bin; fft_bin+=pfb_bin*32768; freq_fft_bin = rfmin + fstep*fft_bin; //Check that the freq of the hit falls within the valid ranges if(frame.if1_alfafb==1){ if(freq_fft_bin < NBF_FREQ_LO || freq_fft_bin > NBF_FREQ_HI) goodfreq=0; } else if(frame.if1_alfafb==0){ if(freq_fft_bin < ALFA_FREQ_LO || freq_fft_bin > ALFA_FREQ_HI) goodfreq=0; } value = (int) (pfb_fft_power); //printf("%d %d %d %d %d %d\n", pfb_bin, fft_bin, pfb_fft_power, blank, event, over_thresh); if(value < 1) { value = 1; } if(value > maxvalue) { maxvalue = value; maxbin = fft_bin; } //populate coarse bin power if(fft_bin_loc==16383) { spectra.coarse_spectra[pfb_bin] = value; } //Only generate string and insert into database if hit valid if(fft_bin_loc!=16383 && goodfreq==1 && gooddata==1) { // spectra.hits[ctr_numhits][0] = value; // spectra.hits[ctr_numhits][1] = fft_bin; //Calculate the frequency of the fine bins and barycenter bary_freq=freq_fft_bin+seti_dop_FreqOffsetAtBaryCenter(freq_fft_bin, spec_time+2400000.5, frame.ra, frame.dec, 2000.0, AO_LAT, AO_LONG, AO_ELEV); //Prepare mysql query to insert hits sprintf(hitquery, "INSERT INTO hit (eventpower, meanpower, binnum, topocentric_freq, barycentric_freq, specid) VALUES (%f, %e, %d, %lf, %lf, %ld)", (double) value, (double) spectra.coarse_spectra[pfb_bin], fft_bin, freq_fft_bin, bary_freq, specid); //Write row to tmp file fprintf(fout, "\\N\t %f\t %e\t %d\t %lf\t %lf\t 0\t 0\t 0\t 0\t 0\t %ld\t \n", (double) value, (double) spectra.coarse_spectra[pfb_bin], fft_bin, freq_fft_bin, bary_freq, specid); /* #ifndef DEBUG // insert header data into serendipvv config table if (mysql_query(conn, hitquery)) { fprintf(stderr, "Error inserting data into sql database... \n"); exiterr(3); } #endif */ } // fill spectraldata with available data and close file // fprintf(datatext, "%d, %d, %d, %e, %f, %d\n", k, beamnum, pfb_bin, (double) spectra.coarse_spectra[pfb_bin], (double) value, fft_bin); ctr_numhits++; data_ptr++; ctr++; }//for(i=0; i<num_records; i++) fclose(fout); sprintf(hitquery, "LOAD DATA LOCAL INFILE 'hits_list.txt' INTO TABLE hit"); // printf("%s\n", hitquery); if (mysql_query(conn, hitquery)) { fprintf(stderr, "Error inserting data into sql database... \n"); exiterr(3); } // fclose(datatext); #ifndef DEBUG if(load_blob(conn, specid, spectra.coarse_spectra)!=0) { fprintf(stderr, "Blob not loaded\n"); specid=0; } #endif // GracePrintf("autoticks"); // GracePrintf("redraw"); // GracePrintf("updateall"); // GracePrintf("kill g0.s0"); // GracePrintf("saveall \"plots/sample%d.agr\"",counter); // grace_init_deux(maxbin,log10(maxvalue),xmax); counter++; for(i=0;i<4094;i++) { spectra.coarse_spectra[i] = spectra.coarse_spectra[i+1]; } #ifdef GRACE plot_beam(&spectra,beamnum); printf("num_records: %d spectra.numhits %d\n",num_records,spectra.numhits); usleep(200000); if(counter%10 == 0) { printf("autoscaling...\n"); GracePrintf("redraw"); GracePrintf("updateall"); GracePrintf("autoscale"); /* //output pdf via grace GracePrintf("HARDCOPY DEVICE \"EPS\""); printf("start eps create\n"); GracePrintf("PAGE SIZE 600, 600"); GracePrintf("saveall \"sample.agr\""); GracePrintf("PRINT TO \"%s\"", "plot.eps"); GracePrintf("PRINT"); */ } #endif } //===================================================== /* // play with some text for(i=0; i<10; i++){ GracePrintf("WITH STRING %d", i); GracePrintf("STRING COLOR 0"); GracePrintf("STRING FONT 8"); GracePrintf("STRING DEF \"TEST\""); GracePrintf("STRING ON"); GracePrintf("STRING LOCTYPE view"); GracePrintf("STRING 0.70, %f", 0.95 - (((float) i) / 40.0) ); } GracePrintf("redraw"); sleep(5); */ //=========================================================== #ifdef GRACE if (GraceIsOpen()) { //Flush the output buffer and close Grace GraceClose(); // We are done exit(EXIT_SUCCESS); } else { exit(EXIT_FAILURE); } #endif //close file close(fd); return 0; }