std::string getODataUTCDateFilter()
{
time_t localTime;
struct tm *utcTime_tm;
localTime = time(NULL);
utcTime_tm = gmtime(&localTime);
std::string date(ItoA(1900+utcTime_tm->tm_year));
date.append("-");
if((utcTime_tm->tm_mon+1) < 10)
{
date.append("0");
date.append(ItoA(utcTime_tm->tm_mon+1));
}
else
date.append(ItoA(utcTime_tm->tm_mon+1));
date.append("-");
if((utcTime_tm->tm_mday) < 10)
{
date.append("0");
date.append(ItoA(utcTime_tm->tm_mday));
}
else
date.append(ItoA(utcTime_tm->tm_mday));
date.append("T");
date.append(ItoA(utcTime_tm->tm_hour));
date.append(":");
date.append(ItoA(utcTime_tm->tm_min));
date.append(":");
date.append(ItoA(utcTime_tm->tm_sec));
date.append(".000Z");
return date;
}
void main()
{
int input;
char* output =(char*) malloc(sizeof(20));
printf("Enter the integer you want to convert into string\n");
scanf("%d",&input);
// printf("hi");
ItoA(input,output);
// printf("hi");
printf("%s",output);
}
void CStream::WriteInt(int nValue)
{
//int nLen = 0;
//const char* sString = NSFastIntToString::GetString(fabs(nValue), nLen);
//if (sString)
//{
// if (nValue < 0)
// WriteChar('-');
// Write((const BYTE*)sString, nLen);
//}
//else
//{
char pBuffer[32];
memset(pBuffer, 0x00, 32);
ItoA(pBuffer, nValue, pBuffer + 31);
return WriteStr(pBuffer);
//}
}
int main(int argc, char **argv)
{
SeqPool seqpool;
bool cs;
if( argc < 2 ) { PrintUsage(); return 1; }
cs = true;
seqpool.Add(argv[1]);
for( SamOutput theSam; theSam.Get(); )
{
char str[81];
char seq[4096];
char csseq[4096];
int qLen, rLen;
int numErr, numLErr, numRErr;
int leftLen, rightLen;
int i;
int Pos;
int identity;
qLen = strlen(theSam.Qual);
identity = IdentityCut;
if( theSam.AS < ScoreCut )
continue;
if( strncmp( theSam.CIGAR, ItoA(qLen, str, 10), strlen(ItoA(qLen, str, 10)) ) != 0 )
continue;
if(cs)
{
if( theSam.IsPlusStrand() )
strcpy(seq, seqpool.GiveMe(theSam.rName)->c_str());
else
ToComplement(seq, seqpool.GiveMe(theSam.rName)->c_str());
}
else
strcpy(seq, seqpool.GiveMe(theSam.rName)->c_str());
numErr=0;
numLErr = 0;
numRErr = 0;
leftLen = 0;
rightLen = 0;
rLen = strlen(seq);
if(cs)
{
ToColorSpace(csseq, seq);
if( theSam.IsPlusStrand() == 0)
Pos = theSam.Pos-2;
else
Pos = rLen-qLen-theSam.Pos;
for(i=1; i<qLen; i++)
{
if( (i+Pos) < 0 )
continue;
if( csseq[i+Pos] != theSam.CS[i+1] )
{
numErr++;
if( (i+Pos) <= (rLen-41) )
numLErr++;
if( (i+Pos) >= 39 )
numRErr++;
}
if( (i+Pos) <= (rLen-41) )
leftLen++;
if( (i+Pos) >= 39 )
rightLen++;
}
}
else
{
// puts(seq);
// puts(theSam.Seq);
Pos = theSam.Pos-1;
for(i=0; i<qLen; i++)
{
if( (i+Pos) < 0 )
continue;
if( seq[i+Pos] != theSam.Seq[i] )
{
numErr++;
if( (i+Pos) < (rLen-40) )
numLErr++;
if( (i+Pos) >= 40 )
numRErr++;
}
if( (i+Pos) < (rLen-40) )
leftLen++;
if( (i+Pos) >= 40 )
rightLen++;
}
// printf("%d\t%d\t%d\t%d\n", theSam.Pos, numErr, numLErr, numRErr);
}
if( numErr > ( qLen*(100-identity)/75 + 1 ) )
{
ErrMsg("numErr.\n");
continue;
}
if( leftLen < LenCut )
continue;
if( rightLen < LenCut )
continue;
if( numErr > 2 )
continue;
if( leftLen < 20 )
if( numLErr > 1 )
continue;
if( rightLen < 20 )
if( numRErr > 1 )
continue;
theSam.Print();
}
return 0;
}
