///////////////////////////////////////////////////////////////////////////////
//
// init() is called whenever the cpi's instance data have changed. In that
// case, it re-initializes the proxy directory instance which points into the
// locally mounted sshfs name spaces, or into the local file system in
// general.
//
// init() will generally throw if the idata->location points elsewhere.
// init() is however assumed to be atomic, so it either succeeds, or it fails
// but then leaves the object state unchanged. That way, the individual
// methods don't need to attempt to recover from a failed init. The only side
// effect can be an additionally mounted sshfs, which is getting cleaned up by
// the adaptor d'tor (that cleanup is optional though).
//
// The single argument, the url 'save', is used to restore state on failure
//
void dir_cpi_impl::init (void)
{
adaptor_instance_data_t adata (this);
directory_instance_data_t idata (this);
if ( idata->location_.get_scheme () != "ssh" &&
idata->location_.get_scheme () != "any" )
{
SAGA_LOG_DEBUG ("sshfs can not handle url:");
SAGA_LOG_DEBUG (idata->location_.get_string ().c_str ());
std::stringstream ss;
ss << "Cannot handle URL scheme " << idata->location_.get_scheme ()
<< " - can only handle schemas 'ssh' or 'any'." << std::endl;
SAGA_ADAPTOR_THROW_NO_CONTEXT (ss.str ().c_str (),
saga::adaptors::AdaptorDeclined);
}
// create a new api object from the changed instance data.
try
{
d_ = saga::filesystem::directory (adata->strip_session (s_),
adata->try_translate (s_, idata->location_),
idata->mode_);
}
catch ( const saga:: exception & e )
{
std::stringstream ss;
ss << "Cannot handle URL: \n\t" << e.what () << "\n";
SSH_ADAPTOR_RETHROW (e, ss.str ().c_str (), saga::BadParameter);
}
}
dir_cpi_impl::~dir_cpi_impl (void)
{
SAGA_LOG_DEBUG("~dir_cpi_impl()");
if (is_opened) {
is_opened = false;
} else {
SAGA_LOG_DEBUG("this instance was closed.");
}
}
void logical_directory_cpi_impl::sync_close(saga::impl::void_t&, double)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_close", saga::NotImplemented);
SAGA_LOG_DEBUG("sync_close()");
check_state();
if (is_opened) {
is_opened = false;
SAGA_LOG_CRITICAL("file is closed \n");
}
else {
SAGA_LOG_DEBUG("this instance was already closed.");
}
}
bool irods_dir::is_dir(const std::string& check_url)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::is_dir");
SAGA_LOG_CRITICAL("-------------- check is_dir -----------------\n");
bool check = false;
std::string sql_str_coll = "\"SELECT COLL_NAME WHERE COLL_NAME = ";
sql_str_coll += "'" + check_url + "'";
sql_str_coll += "\"";
char* c_sql_coll = const_cast<char*>(sql_str_coll.c_str());
// std::cout << "c_sql_coll:" << c_sql_coll << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_coll};
// std::vector <irdEnt_t*> irds_coll;
std::vector <irdEnt_t> irds_coll;
irds_coll = icmd.iquest(argc, argv);
if (irds_coll.size() > 0) {
check = true;
}
else {
check = false;
}
return check;
}
void logical_directory_cpi_impl::sync_list(std::vector<saga::url>& list,
std::string pattern, int flags)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_list", saga::NotImplemented);
SAGA_LOG_DEBUG("sync_list()");
check_state();
saga::url irods_url_org;
this->sync_get_cwd(irods_url_org); // to get rid of the /. at the end...
std::string irods_path = irods_url_org.get_path();
std::vector <std::string> results;
std::vector <saga::url> list_tmp;
try {
results = irdsdir.list(irods_path, pattern, flags);
list_tmp.insert(list_tmp.begin(), results.begin(), results.end());
for(unsigned int i=0; i< list_tmp.size(); i++){
list_tmp[i].set_scheme(irods_url_org.get_scheme());
// list_tmp[i].set_host(irods_url_org.get_host());
}
list = list_tmp;
}
catch (boost::system::system_error const& e) {
SAGA_ADAPTOR_THROW(e.what(), saga::NoSuccess);
}
}
saga::off_t irods_dir::get_size(const std::string& check_url)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::get_size");
SAGA_LOG_CRITICAL("-------------- dir, get_size -----------------\n");
saga::off_t data_size = 0;
std::string sql_str_coll = "\"SELECT sum(DATA_SIZE) WHERE COLL_NAME = ";
sql_str_coll += "'" + check_url + "'";
sql_str_coll += "\"";
char* c_sql_coll = const_cast<char*>(sql_str_coll.c_str());
std::cout << "c_sql_data:" << c_sql_coll << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_coll};
// std::vector <irdEnt_t*> irds_coll;
std::vector <irdEnt_t> irds_coll;
irds_coll = icmd.iquest(argc, argv);
if (irds_coll.size() == 1) {
// data_size = irds_coll[0]->dataSize;
data_size = irds_coll[0].dataSize;
}
else {
data_size = 0;
}
return data_size;
}
void irods_dir::meta(const std::string& meta_url,
const std::string& meta_cmd, const std::string& meta_opt,
const std::string& meta_key, const std::string& meta_val)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_file::meta");
SAGA_LOG_CRITICAL("-------------- col metadata -----------------\n");
// remove the '/' at the end of the pathname
std::string col_path = meta_url;
if (col_path.rfind('/') == col_path.size()-1) {
col_path.erase(col_path.rfind('/'));
}
char* c_meta_url = const_cast<char*>(col_path.c_str());
char* c_meta_cmd = const_cast<char*>(meta_cmd.c_str());
char* c_meta_opt = const_cast<char*>(meta_opt.c_str());
char* c_meta_key = const_cast<char*>(meta_key.c_str());
char* c_meta_val = const_cast<char*>(meta_val.c_str());
// std::cout << "c_meta_url=" << c_meta_url << std::endl;
// std::cout << "c_meta_cmd=" << c_meta_cmd << std::endl;
// std::cout << "c_meta_opt=" << c_meta_opt << std::endl;
// std::cout << "c_meta_key=" << c_meta_key << std::endl;
// std::cout << "c_meta_val=" << c_meta_val << std::endl;
int argc = 6;
// char *argv[6] = {"imeta", "ls", "-d", "hoge.txt", test_attr1, value1};
char *argv[6] = {"imeta", c_meta_cmd, c_meta_opt, c_meta_url, c_meta_key, c_meta_val};
icmd.imeta(argc, argv);
}
///////////////////////////////////////////////////////////////////////////////
// throws : BadParameter
void helper::check_scheme(saga::url& rm, bool local_ok)
{
std::string scheme(rm.get_scheme());
if (scheme == "rns") {
std::cout << "RNS good" << std::endl;
return;
}
if (scheme.empty() || scheme == "file") {
if (local_ok) {
SAGA_LOG_DEBUG("local file.");
return;
} else {
SAGA_OSSTREAM strm;
strm << "Could not initialize file for [" << rm << "]. "
<< "Only any:// and rns:// "
<< "schemes are supported.";
SAGA_ADAPTOR_THROW_NO_CONTEXT(SAGA_OSSTREAM_GETSTRING(strm), saga::BadParameter);
}
}
//SRA : rns
if (!(scheme == "irods" || scheme == "any")) {
SAGA_OSSTREAM strm;
strm << "Could not initialize file for [" << rm << "]. "
<< "Only any:// and rns:// "
<< "schemes are supported.";
SAGA_ADAPTOR_THROW_NO_CONTEXT(SAGA_OSSTREAM_GETSTRING(strm), saga::BadParameter);
}
}
///////////////////////////////////////////////////////////////////////////////
// namespace_directory functions
///////////////////////////////////////////////////////////////////////////////
//
void logical_directory_cpi_impl::sync_change_dir(saga::impl::void_t&, saga::url name)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_change_dir", saga::NotImplemented);
SAGA_LOG_DEBUG("dir, sync_change_dir()");
check_state();
saga::url irods_url_org;
this->sync_get_cwd(irods_url_org); // to get rid of the /. at the end...
std::string irods_path;
boost::filesystem::path i_path(name.get_path());
if (i_path.has_root_path()){
irods_path = name.get_path();
}
else {
irods_path = irods_url_org.get_path() + "/" + name.get_path();
}
try {
// std::cout<< "irods_path :" << irods_path << std::endl;
irdsdir.change_dir(irods_path);
}
catch (boost::system::system_error const& e) {
SAGA_ADAPTOR_THROW(e.what(), saga::NoSuccess);
}
}
bool irods_file::meta_attr_exists(const std::string& meta_url, const std::string& attrName)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::exists");
SAGA_LOG_CRITICAL("-------------- file metadata attr_exists -----------------\n");
bool check = false;
boost::filesystem::path meta_url_org(meta_url);
std::string meta_name = meta_url_org.leaf();
std::string meta_url_bpath = meta_url_org.branch_path().string();
std::string sql_str_data = "\"SELECT META_DATA_ATTR_NAME, META_DATA_ATTR_VALUE WHERE COLL_NAME = ";
sql_str_data += "'" + meta_url_bpath + "'";
sql_str_data += " AND DATA_NAME = ";
sql_str_data += "'" + meta_name + "'";
sql_str_data += " AND META_DATA_ATTR_NAME = ";
sql_str_data += "'" + attrName + "'";
sql_str_data += "\"";
char* c_sql_data = const_cast<char*>(sql_str_data.c_str());
// std::cout << "c_sql_data:" << c_sql_data << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_data};
std::vector <std::string> results;
std::vector <irdEnt_t> irds_meta;
irds_meta = icmd.iquest(argc, argv);
if (irds_meta.size() > 0){
check = true;
}
return check;
}
std::string irods_file::meta_get_val(const std::string& meta_url, const std::string& attrName)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_file::meta");
SAGA_LOG_CRITICAL("-------------- file metadata get_val -----------------\n");
boost::filesystem::path meta_url_org(meta_url);
std::string meta_name = meta_url_org.leaf();
std::string meta_url_bpath = meta_url_org.branch_path().string();
std::string sql_str_data = "\"SELECT META_DATA_ATTR_NAME, META_DATA_ATTR_VALUE WHERE COLL_NAME = ";
sql_str_data += "'" + meta_url_bpath + "'";
sql_str_data += " AND DATA_NAME = ";
sql_str_data += "'" + meta_name + "'";
sql_str_data += " AND META_DATA_ATTR_NAME = ";
sql_str_data += "'" + attrName + "'";
sql_str_data += "\"";
char* c_sql_data = const_cast<char*>(sql_str_data.c_str());
// std::cout << "c_sql_data:" << c_sql_data << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_data};
std::vector <std::string> results;
std::vector <irdEnt_t> irds_meta;
irds_meta = icmd.iquest(argc, argv);
std::string val;
val = irds_meta[0].metaDataVal;
// std::cout << "val:" << val << std::endl;
return val;
}
void irods_dir::open(const std::string& irods_url, int flags)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::open");
SAGA_LOG_CRITICAL("-------------- create entry (open) -----------------\n");
// Create an empty file as dummy
char emp_f[256] = "/tmp/sia-empty-dummy-file";
// char emp_f[256] = "irods2.4.tgz_0";
FILE *fp;
fp = fopen(emp_f, "w");
fclose(fp);
// system("ls /tmp");
// sleep(1);
char* c_url = const_cast<char*>(irods_url.c_str());
std::cout << "c_url:" << c_url << std::endl;
std::cout << "emp_f:" << emp_f << std::endl;
int argc = 3;
char *argv[3] = {"iput", emp_f, c_url};
icmd.iput(argc, argv);
}
void irods_file::meta(const std::string& meta_url,
const std::string& meta_cmd, const std::string& meta_opt,
const std::string& meta_key, const std::string& meta_val)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_file::meta");
SAGA_LOG_CRITICAL("-------------- metadata -----------------\n");
char* c_meta_url = const_cast<char*>(meta_url.c_str());
char* c_meta_cmd = const_cast<char*>(meta_cmd.c_str());
char* c_meta_opt = const_cast<char*>(meta_opt.c_str());
char* c_meta_key = const_cast<char*>(meta_key.c_str());
char* c_meta_val = const_cast<char*>(meta_val.c_str());
// std::cout << "c_meta_url=" << c_meta_url << std::endl;
// std::cout << "c_meta_cmd=" << c_meta_cmd << std::endl;
// std::cout << "c_meta_opt=" << c_meta_opt << std::endl;
// std::cout << "c_meta_key=" << c_meta_key << std::endl;
// std::cout << "c_meta_val=" << c_meta_val << std::endl;
// SAGA_LOG_CRITICAL("c_meta_url=%s \n", c_meta_url);
// SAGA_LOG_CRITICAL("c_meta_cmd=%s \n", c_meta_cmd);
// SAGA_LOG_CRITICAL("c_meta_opt=%s \n", c_meta_opt);
// SAGA_LOG_CRITICAL("c_meta_key=%s \n", c_meta_key);
// SAGA_LOG_CRITICAL("c_meta_val=%s \n", c_meta_val);
int argc = 6;
// char *argv[6] = {"imeta", "ls", "-d", "hoge.txt", test_attr1, value1};
char *argv[6] = {"imeta", c_meta_cmd, c_meta_opt, c_meta_url, c_meta_key, c_meta_val};
icmd.imeta(argc, argv);
}
///////////////////////////////////////////////////////////////////////////////
// logical_file functions
void logical_file_cpi_impl::sync_list_locations(std::vector<saga::url>& locations)
{
// SAGA_ADAPTOR_THROW ("Not implemented! ", saga::NotImplemented);
SAGA_LOG_DEBUG("file sync_list_locations()");
check_state();
instance_data instanceData (this);
std::string rns_path = instanceData->location_.get_path();
std::vector <std::string> results;
std::vector <saga::url> list_tmp;
try {
results = rns_lfile.list_locations(rns_path);
list_tmp.insert(list_tmp.begin(), results.begin(), results.end());
// for(unsigned int i=0; i< list_tmp.size(); i++){
// list_tmp[i].set_scheme(irods_url_org.get_scheme());
// }
locations = list_tmp;
}
catch (boost::system::system_error const& e) {
SAGA_ADAPTOR_THROW(e.what(), saga::NoSuccess);
}
}
void logical_directory_cpi_impl::sync_get_name(saga::url& name)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_get_name", saga::NotImplemented);
SAGA_LOG_DEBUG("sync_get_name()");
check_state();
saga::url u;
this->sync_get_cwd(u); // to get rid of the /. at the end...
boost::filesystem::path path(u.get_path());
std::string path_str(u.get_path());
if (path.empty()) {
SAGA_ADAPTOR_THROW ("path is empty.", saga::NoSuccess);
}
if( !path.has_root_path() )
path = boost::filesystem::path("/"+path_str);
path_str = path.string();
std::string::size_type idx = path_str.rfind("/");
( idx == 0 ) ? path = boost::filesystem::path(path_str.substr(1, path_str.size()-1)) :
path = boost::filesystem::path(path_str.substr(idx+1, path_str.size()-1));
if( path.string().size() == 0 ) path = boost::filesystem::path("/");
name = path.string();
}
void logical_directory_cpi_impl::sync_exists(bool& exists, saga::url url)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_exists", saga::NotImplemented);
SAGA_LOG_DEBUG("sync_exists()");
check_state();
saga::url irods_url_org;
this->sync_get_cwd(irods_url_org); // to get rid of the /. at the end...
std::string irods_path = irods_url_org.get_path();
std::string check_path;
boost::filesystem::path i_path(url.get_path());
if (i_path.has_root_path()){
check_path = url.get_path();
}
else {
check_path = irods_url_org.get_path() + "/" + url.get_path();
}
// to get rid of the / at the end the check_path
if (check_path.substr(check_path.size()-1,1) == "/"){
check_path.erase(check_path.size()-1);
// std::cout << "check_path.erased:" << check_path << std::endl;
}
try {
exists = irdsdir.exists(check_path);
std::string str_buf = "check_path:" + check_path;
SAGA_LOG_CRITICAL(str_buf.c_str());
}
catch (boost::system::system_error const& e) {
SAGA_ADAPTOR_THROW(e.what(), saga::NoSuccess);
}
}
std::vector <std::string> irods_dir::find_attr(const std::string& meta_url, const std::string& attr_pattern)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::find_attr");
SAGA_LOG_CRITICAL("-------------- coll metadata find_attr -----------------\n");
// Replace wildcard chars
std::string attr_pattern_buf0 = boost::regex_replace(attr_pattern, boost::regex("[%_]"), "\\\\$0");
std::string attr_pattern_buf1 = boost::regex_replace(attr_pattern_buf0, boost::regex("[*]"), "%");
std::string attr_pattern_sql = boost::regex_replace(attr_pattern_buf1, boost::regex("[?]"), "_");
std::string sql_str_data = "\"SELECT META_COLL_ATTR_NAME, META_COLL_ATTR_VALUE WHERE COLL_NAME = ";
sql_str_data += "'" + meta_url + "'";
sql_str_data += " AND META_COLL_ATTR_NAME like ";
sql_str_data += "'" + attr_pattern_sql + "'";
sql_str_data += "\"";
char* c_sql_data = const_cast<char*>(sql_str_data.c_str());
// std::cout << "c_sql_data:" << c_sql_data << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_data};
std::vector <std::string> results;
std::vector <irdEnt_t> irds_meta;
irds_meta = icmd.iquest(argc, argv);
for ( unsigned int i = 0; i < irds_meta.size (); i++ )
{
results.push_back(irds_meta[i].metaCollAttr);
}
return results;
}
std::vector <std::string> irods_dir::list(const std::string& irods_url, std::string pattern, int flags)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::list");
SAGA_LOG_CRITICAL("-------------- list entries -----------------\n");
SAGA_LOG_CRITICAL("-------------- list entries (data) -----------------\n");
std::string sql_str_data = "\"SELECT DATA_NAME WHERE COLL_NAME = ";
sql_str_data += "'" + irods_url + "'";
sql_str_data += "\"";
char* c_sql_data = const_cast<char*>(sql_str_data.c_str());
// std::cout << "c_sql_data:" << c_sql_data << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_data};
std::vector <std::string> results_data;
// std::vector <irdEnt_t*> irds_data;
std::vector <irdEnt_t> irds_data;
irds_data = icmd.iquest(argc, argv);
for ( unsigned int i = 0; i < irds_data.size (); i++ )
{
// results_data.push_back(irds_data[i]->dataName);
results_data.push_back(irds_data[i].dataName);
}
SAGA_LOG_CRITICAL("-------------- list entries (coll) -----------------\n");
std::string sql_str_coll = "\"SELECT COLL_NAME WHERE COLL_NAME like ";
sql_str_coll += "'" + irods_url + "/%'";
sql_str_coll += " AND COLL_NAME not like ";
sql_str_coll += "'" + irods_url + "/%/%'";
sql_str_coll += "\"";
char* c_sql_coll = const_cast<char*>(sql_str_coll.c_str());
// std::cout << "c_sql_coll:" << c_sql_coll << std::endl;
int argc2 = 2;
char *argv2[2] = {"iquest", c_sql_coll};
std::vector <std::string> results_coll;
// std::vector <irdEnt_t*> irds_coll;
std::vector <irdEnt_t> irds_coll;
irds_coll = icmd.iquest(argc2, argv2);
for ( unsigned int i = 0; i < irds_coll.size (); i++ )
{
// boost::filesystem::path i_path(irds_coll[i]->collName);
boost::filesystem::path i_path(irds_coll[i].collName);
results_coll.push_back(i_path.leaf());
}
std::vector <std::string> results;
results = results_data;
results.insert(results.end(), results_coll.begin(), results_coll.end());
return results;
}
logical_file_cpi_impl::~logical_file_cpi_impl (void)
{
if (is_opened) {
is_opened = false;
} else {
SAGA_LOG_DEBUG("this instance was closed.");
}
}
void logical_directory_cpi_impl::sync_is_link(bool& is_link)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_is_link", saga::NotImplemented);
SAGA_LOG_DEBUG("sync_is_link()");
check_state();
is_link = false;
}
bool irods_dir::is_link(const std::string& check_url)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::is_link");
SAGA_LOG_CRITICAL("-------------- check is_link -----------------\n");
bool check = false; // current iRODS v2.2 does not support link.
return check;
}
void irods_dir::change_dir(const std::string& irods_url)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::change_dir");
SAGA_LOG_CRITICAL("-------------- change directory -----------------\n");
char* c_url = const_cast<char*>(irods_url.c_str());
int argc = 2;
char *argv[2] = {"icd", c_url};
icmd.icd(argc, argv);
}
void irods_dir::remove(const std::string& irods_url, int flags)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::remove");
SAGA_LOG_CRITICAL("-------------- remove file -----------------\n");
char* c_url = const_cast<char*>(irods_url.c_str());
int argc = 3;
char *argv[3] = {"irm", "-rf", c_url};
icmd.irm(argc, argv);
}
bool irods_dir::exists(const std::string& check_url)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::exists");
SAGA_LOG_CRITICAL("-------------- check exists -----------------\n");
SAGA_LOG_CRITICAL("-------------- check exists (data) -----------------\n");
bool check = false;
boost::filesystem::path check_url_org(check_url);
std::string check_name = check_url_org.leaf();
std::string check_url_bpath = check_url_org.branch_path().string();
std::string sql_str_data = "\"SELECT DATA_NAME, COLL_NAME WHERE COLL_NAME = ";
sql_str_data += "'" + check_url_bpath + "'";
sql_str_data += " AND DATA_NAME = ";
sql_str_data += "'" + check_name + "'";
sql_str_data += "\"";
char* c_sql_data = const_cast<char*>(sql_str_data.c_str());
// std::cout << "c_sql_data:" << c_sql_data << std::endl;
int argc = 2;
char *argv[2] = {"iquest", c_sql_data};
// std::vector <irdEnt_t*> irds_data;
std::vector <irdEnt_t> irds_data;
irds_data = icmd.iquest(argc, argv);
if (irds_data.size() > 0) {
check = true;
}
SAGA_LOG_CRITICAL("-------------- check exists (coll) -----------------\n");
std::string sql_str_coll = "\"SELECT COLL_NAME WHERE COLL_NAME = ";
sql_str_coll += "'" + check_url + "'";
sql_str_coll += "\"";
char* c_sql_coll = const_cast<char*>(sql_str_coll.c_str());
// std::cout << "c_sql_coll:" << c_sql_coll << std::endl;
int argc2 = 2;
char *argv2[2] = {"iquest", c_sql_coll};
// std::vector <irdEnt_t*> irds_coll;
std::vector <irdEnt_t> irds_coll;
irds_coll = icmd.iquest(argc2, argv2);
if (irds_coll.size() > 0) {
check = true;
}
return check;
}
void irods_dir::move(const std::string& irods_url_src,
const std::string& irods_url_tar, int flags)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::move");
SAGA_LOG_CRITICAL("-------------- move file -----------------\n");
char* src_c_url = const_cast<char*>(irods_url_src.c_str());
char* tar_c_url = const_cast<char*>(irods_url_tar.c_str());
int argc = 3;
char *argv[3] = {"imv", src_c_url, tar_c_url};
icmd.imv(argc, argv);
}
void irods_dir::open_dir(const std::string& irods_url, int flags)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::open_dir");
SAGA_LOG_CRITICAL("-------------- create directory (open_dir) -----------------\n");
char* c_url = const_cast<char*>(irods_url.c_str());
int argc = 3;
char *argv[3] = {"imkdir", "-p", c_url};
icmd.imkdir(argc, argv);
}
~log_processor()
{
SAGA_LOG_DEBUG(("Condor adaptor: Closing log "
+ filename_).c_str());
#if BOOST_VERSION >= 103500
thread_.interrupt();
#else
interrupt_thread_ = true;
#endif
thread_.join();
}
void irods_dir::copy(const std::string& irods_url_src,
const std::string& irods_url_tar, int flags)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::copy");
SAGA_LOG_CRITICAL("-------------- copy file -----------------\n");
char* src_c_url = const_cast<char*>(irods_url_src.c_str());
char* tar_c_url = const_cast<char*>(irods_url_tar.c_str());
int argc = 4;
char *argv[4] = {"icp", "-r", src_c_url, tar_c_url};
icmd.icp(argc, argv);
}
void logical_directory_cpi_impl::sync_get_url(saga::url& url)
{
// SAGA_ADAPTOR_THROW ("Not implemented! sync_get_url", saga::NotImplemented);
SAGA_LOG_DEBUG("sync_get_url()");
check_state();
adaptor_data_t adaptorData(this);
instance_data instanceData (this);
saga::url lfn_url(instanceData->location_.get_url());
url = lfn_url;
}
std::string irods_dir::get_entry(const std::string& irods_url, std::size_t entry)
{
SAGA_LOG_DEBUG("irods_file_adaptor::api::irods_dir::get_num_entries");
SAGA_LOG_CRITICAL("-------------- get entry -----------------\n");
std::string pattern;
int flags; //dummy
std::vector <std::string> entry_list;
entry_list = this->list(irods_url, pattern, flags);
return entry_list[entry];
}
