void MuscleOutput(MSA &msa)
{
MHackEnd(msa);
if (g_bStable)
{
MSA msaStable;
Stabilize(msa, msaStable);
msa.Clear(); // save memory
DoOutput(msaStable);
}
else
DoOutput(msa);
}
void prepareAlignResults(MSA& msa, const DNAAlphabet* al, MultipleSequenceAlignment& ma, bool mhack) {
if (mhack) {
MHackEnd(msa);
}
MuscleContext* ctx = getMuscleContext();
if (ctx->params.g_bStable) {
MSA msaStable;
Stabilize(msa, msaStable);
msa.Clear();
convertMSA2MAlignment(msaStable, al, ma);
} else {
convertMSA2MAlignment(msa, al, ma);
}
}
void CLife::ToggleEditMode()
{
if ( !EditMode )
{
Pause();
Stabilize();
SyncGrids();
EditMode = true;
}
else
{
EditMode = false;
//UnPause();
}
}
bool C4Object::ExecMovement() // Every Tick1 by Execute
{
// update in which material this object is
UpdateInMat();
// Containment check
if (Contained)
{
CopyMotion(Contained);
return true;
}
// General mobility check
if (Category & C4D_StaticBack) return false;
// Movement execution
if (Mobile) // Object is moving
{
// Move object
DoMovement();
// Demobilization check
if ((xdir==0) && (ydir==0) && (rdir==0)) Mobile=0;
// Check for stabilization
if (rdir==0) Stabilize();
}
else // Object is static
{
// Check for stabilization
Stabilize();
// Check for mobilization
if (!::Game.iTick10)
{
// Gravity mobilization
xdir=ydir=rdir=0;
Mobile=1;
}
}
// Enforce zero rotation
if (!Def->Rotateable) fix_r=Fix0;
// Out of bounds check
if ((!Inside<int32_t>(GetX() + Shape.GetX(), -Shape.Wdt, GBackWdt) && !(GetPropertyInt(P_BorderBound) & C4D_Border_Sides))
|| ((GetY() + Shape.GetY() > GBackHgt) && !(GetPropertyInt(P_BorderBound) & C4D_Border_Bottom)))
{
C4PropList* pActionDef = GetAction();
// Never remove attached objects: If they are truly outside landscape, their target will be removed,
// and the attached objects follow one frame later
if (!pActionDef || !Action.Target || pActionDef->GetPropertyP(P_Procedure) != DFA_ATTACH)
{
bool fRemove = true;
// never remove HUD objects
if (Category & C4D_Parallax)
{
int parX, parY;
GetParallaxity(&parX, &parY);
fRemove = false;
if (GetX()>GBackWdt || GetY()>GBackHgt) fRemove = true; // except if they are really out of the viewport to the right...
else if (GetX()<0 && !!parX) fRemove = true; // ...or it's not HUD horizontally and it's out to the left
else if (!parX && GetX()<-GBackWdt) fRemove = true; // ...or it's HUD horizontally and it's out to the left
}
if (fRemove)
{
AssignDeath(true);
AssignRemoval();
}
}
}
return true;
}
void CLife::OnKeyUp( SDLKey sym, SDLMod mod, Uint16 unicode )
{
switch ( sym )
{
case SDLK_RIGHT:
{
Pause();
break;
}
case SDLK_s:
{
Pause();
Save();
break;
}
case SDLK_RETURN:
{
TogglePause();
break;
}
case SDLK_UP:
case SDLK_PLUS:
case SDLK_KP_PLUS:
case SDLK_PERIOD:
{
Framerate->raiseFPS();
break;
}
case SDLK_DOWN:
case SDLK_MINUS:
case SDLK_KP_MINUS:
case SDLK_COMMA:
{
Framerate->lowerFPS();
break;
}
case SDLK_e:
{
ToggleEditMode();
break;
}
case SDLK_h:
{
//Pause();
TogglePause();
Stabilize();
ToggleStepping();
TogglePause();
break;
}
case SDLK_c:
{
SwitchColours();
break;
}
case SDLK_r:
{
Reset();
break;
}
//Patterns:
case SDLK_0:
case SDLK_KP0:
{
Patternify(0);
break;
}
case SDLK_1:
case SDLK_KP1:
{
Patternify(1);
break;
}
case SDLK_2:
case SDLK_KP2:
{
Patternify(2);
break;
}
case SDLK_3:
case SDLK_KP3:
{
Patternify(3);
break;
}
case SDLK_7:
case SDLK_KP7:
case SDLK_x:
{
Patternify(7);
break;
}
case SDLK_8:
case SDLK_KP8:
{
Patternify(8);
break;
}
case SDLK_9:
case SDLK_KP9:
{
Patternify(9);
break;
}
default:
{
break;
}
}
}
void CLife::Save()
{
Stabilize();
Flash();
LifeGrid->toFile(OutFile);
}
