/* SetConfParms: set conf parms relevant to this tool */
void SetConfParmsHCopy(void)
{
int i;
Boolean b;
char buf[MAXSTRLEN];
nParm = GetConfig("HCOPY", TRUE, cParm, MAXGLOBS);
if (nParm>0){
if (GetConfInt(cParm,nParm,"TRACE",&i)) trace = i;
if (GetConfBool(cParm,nParm,"SAVEASVQ",&b)) saveAsVQ = b;
if (GetConfInt(cParm,nParm,"NSTREAMS",&i)) swidth0 = i;
if (GetConfStr(cParm,nParm,"SOURCEFORMAT",buf))
srcFF = Str2Format(buf);
if (GetConfStr(cParm,nParm,"TARGETFORMAT",buf))
tgtFF = Str2Format(buf);
if (GetConfStr(cParm,nParm,"SOURCEKIND",buf))
srcPK = Str2ParmKind(buf);
if (GetConfStr(cParm,nParm,"TARGETKIND",buf)) {
tgtPK = Str2ParmKind(buf);
if (tgtPK&HASNULLE)
HError(1019, "SetConfParms: incompatible TARGETKIND=%s for coding", buf);
}
}
}
frcDisc = TRUE; break;
case 'e':
gen = GetChkedLong(gst,LONG_MAX,s); break;
case 'h':
srcHdr = TRUE; break;
case 'i':
nItems = GetChkedInt(1,100,s); break;
case 'n':
numS = GetChkedInt(1,SMAX-1,s); break;
case 'o':
obsFmt = TRUE; break;
case 'p':
replay = TRUE; break;
case 'r':
rawOut = TRUE; break;
case 's':
gst = GetChkedLong(0,LONG_MAX,s); break;
case 't':
tgtHdr = TRUE; break;
case 'z':
prData = FALSE; break;
case 'F':
if (NextArg() != STRINGARG)
printf("Loading alignment HMM set %s\n",q);
}
AddMMF(&al_hset,q);
if (eos)
break;
q=p+1;
}
p++;
}
}
if (strlen(al_hmmLst) > 0 )
MakeHMMSet(&al_hset, al_hmmLst );
else /* use same hmmList */
MakeHMMSet(&al_hset, hmmListFn );
if (strlen(al_hmmDir) > 0 )
LoadHMMSet(&al_hset,al_hmmDir,al_hmmExt);
else
LoadHMMSet(&al_hset,NULL,NULL);
/* switch model set */
UseAlignHMMSet(fbInfo,x,&al_hset);
if (parMode != 0) {
ConvDiagC(&al_hset,TRUE);
ConvLogWt(&al_hset);
}
/* and echo status */
if (trace&T_TOP) {
if (strlen(al_hmmDir) > 0 )
printf(" HMM Dir %s",al_hmmDir);
if (strlen(al_hmmExt) > 0 )
printf(" Ext %s",al_hmmExt);
