void _ModulesManager_Print( void* modulesManager, Stream* stream ) {
ModulesManager* self = (ModulesManager*)modulesManager;
Index i;
/* General info */
Journal_Printf( (void*) stream, "%s (ptr): %p\n", ModulesManager_Type, self );
/* Print parent */
_Stg_Class_Print( self, stream );
if( moduleDirectories->count > 0 ) {
Journal_Printf( stream, "Search Path:\n" );
Stream_Indent( stream );
for( i = 0; i < moduleDirectories->count; ++i ) {
Journal_Printf( stream, "(path) %s\n", Stg_ObjectList_ObjectAt( moduleDirectories, i ) );
}
Stream_UnIndent( stream );
}
if( self->modules->count > 0 ) {
Journal_Printf( stream, "Loaded modules:\n" );
Stream_Indent( stream );
for( i = 0; i < self->modules->count; ++i ) {
Module* module = (Module*)Stg_ObjectList_At( self->modules, i );
Journal_Printf( stream, "%s\n", module->name );
}
Stream_UnIndent( stream );
}
}
void _LinkedDofInfo_Print( void* linkedDofInfo, Stream* stream ) {
LinkedDofInfo* self = (LinkedDofInfo*)linkedDofInfo;
Index dofSet_I = 0;
Node_Index node_I = 0;
Dof_Index nodeLocalDof_I = 0;
/* General info */
Journal_Printf( stream, "LinkedDofInfo (ptr): %p\n", self );
/* Print parent */
_Stg_Class_Print( self, stream );
Journal_Printf( stream, "%d Linked dof sets active:\n", self->linkedDofSetsCount );
Stream_Indent( stream );
for ( dofSet_I = 0; dofSet_I < self->linkedDofSetsCount; dofSet_I++ ) {
Journal_Printf( stream, "Set %u: has eqNum %d\n", dofSet_I, self->eqNumsOfLinkedDofs[dofSet_I] );
}
Stream_UnIndent( stream );
Journal_Printf( stream, "Linked dof sets table:\n", self->linkedDofSetsCount );
Stream_Indent( stream );
for ( node_I = 0; node_I < self->dofLayout->_numItemsInLayout; node_I++ ) {
Journal_Printf( stream, "Node %d: ", node_I );
for ( nodeLocalDof_I = 0; nodeLocalDof_I < self->dofLayout->dofCounts[node_I]; nodeLocalDof_I++ ) {
Journal_Printf( stream, "%d, ", self->linkedDofTbl[node_I][nodeLocalDof_I] );
}
Journal_Printf( stream, "\n" );
}
Stream_UnIndent( stream );
}
void Materials_Register_AssignParticleProperties(
void* materialRegister,
MaterialPointsSwarm* swarm,
Variable_Register* variableRegister )
{
Materials_Register* self = (Materials_Register*)materialRegister;
Material* material;
Particle_Index lParticle_I;
Particle_Index particleLocalCount = swarm->particleLocalCount;
Particle_Index particleGlobalCount = 0;
Stream* stream = Journal_Register( Info_Type, (Name)self->type );
Processor_Index formerStreamPrintingRank;
double setupStartTime = 0;
double setupTime = 0, tmin, tmax;
Bool firstStatusPrint = True;
formerStreamPrintingRank = Stream_GetPrintingRank( stream );
Stream_SetPrintingRank( stream, 0 );
Journal_Printf( stream, "In func %s(): for swarm \"%s\"\n", __func__, swarm->name );
Stream_Indent( stream );
setupStartTime = MPI_Wtime();
MPI_Reduce( &particleLocalCount, &particleGlobalCount, 1, MPI_UNSIGNED, MPI_SUM, 0, swarm->comm );
Journal_Printf( stream, "Assigning initial particle properties to the %u global particles\n",
particleGlobalCount );
Stream_Indent( stream );
for ( lParticle_I = 0 ; lParticle_I < particleLocalCount ; lParticle_I++ ) {
material = MaterialPointsSwarm_GetMaterialAt( swarm, lParticle_I );
if ( material ) {
/* Loop through material's dictionary assigning values to the variables of this particle */
Variable_Register_SetAllVariablesFromDictionary( variableRegister, lParticle_I, material->dictionary );
}
_Materials_Register_PrintParticleAssignUpdate( self, swarm, lParticle_I, stream, &firstStatusPrint );
}
Stream_UnIndent( stream );
/* Need this barrier so the time is accurate */
MPI_Barrier( swarm->comm );
setupTime = MPI_Wtime() - setupStartTime;
Stream_UnIndent( stream );
MPI_Reduce( &setupTime, &tmin, 1, MPI_DOUBLE, MPI_MIN, 0, swarm->comm );
MPI_Reduce( &setupTime, &tmax, 1, MPI_DOUBLE, MPI_MAX, 0, swarm->comm );
Journal_Printf( stream, "%s(): finished setup of material properties for swarm \"%s\"\n"
"\ttook %g [min] / %g [max] secs\n", __func__, swarm->name, tmin, tmax );
Stream_SetPrintingRank( stream, formerStreamPrintingRank );
}
void CheckDictionaryKeys( Dictionary* dictionary, char* errorMessage)
{
Dictionary_Index index_I, index_J;
/* Put in the Journal_Firewall stream */
Stream* errStream = Journal_Register( Error_Type, "DictionaryCheck");
int errCount;
int** keyIndexArray;
keyIndexArray = Memory_Alloc_2DArray( int, ((dictionary->count)*(dictionary->count - 1)),
2, "Key Index Array" );
/* Iterate through the whole dictionary*/
errCount = 0;
for ( index_I = 0; index_I < dictionary->count; ++index_I )
{
/*For Each key, search through dictionary to see if there is another
key the same*/
for (index_J = index_I+1; index_J < dictionary->count; ++index_J ) {
if (index_J != index_I)
{
/* If there are two keys with the same name */
if ( (0 == strcasecmp( dictionary->entryPtr[index_I]->key,
dictionary->entryPtr[index_J]->key)) )
{
//preserve indexes index_I, index_J
keyIndexArray[errCount][0] = index_I;
keyIndexArray[errCount][1] = index_J;
//increment counter
errCount++;
}
}
}
}
/*if keyIndexArray is not empty, then do a print to error stream
for each problem then call Journal_Firewall */
if (errCount > 0) {
Index errIndex;
Journal_Printf(errStream, errorMessage);
Journal_Printf(errStream,"Error found in dictionary (ptr) %p:\n",dictionary);
Journal_Printf(errStream,"The following keys were repeated:\n");
Stream_Indent(errStream);
for (errIndex = 0; errIndex < errCount; errIndex++) {
Journal_Printf(errStream, "\"%s\"\n",
dictionary->entryPtr[keyIndexArray[errIndex][1]]->key );
}
//Do I need this one here if Journal_Firewall exits prog?
Stream_UnIndent(errStream);
Journal_Firewall(errCount == 0, errStream,
"Error in %s with %d entries in dictionary keys\n",
__func__, errCount);
}
Memory_Free(keyIndexArray);
}
void _Stg_ObjectAdaptor_Print( void* objectAdaptor, struct Stream* stream ) {
Stg_ObjectAdaptor* self = (Stg_ObjectAdaptor*)objectAdaptor;
/* General info */
Journal_Printf( stream, "Stg_ObjectAdaptor (ptr): %p\n", self );
Stream_Indent( stream );
_Stg_Object_Print( self, stream );
Journal_Printf( stream, "iOwn: %s\n", self->iOwn ? "Yes" : "No" );
Journal_Printf( stream, "isGlobal: %s\n", self->isGlobal ? "Yes" : "No" );
Journal_Printf( stream, "isStgClass: %s\n", self->isStgClass ? "Yes" : "No" );
if( self->isStgClass ) {
Stg_Class_Print( self->dataPtr, stream );
}
else {
if( self->ptrPrint ) {
self->ptrPrint( self->dataPtr, stream );
}
else {
Journal_Printf( stream, "Don't know how to print the pointer (it is not to a StGermain class)\n" );
}
}
Stream_UnIndent( stream );
}
void _lucViewport_Print( void* viewport, Stream* stream )
{
lucViewport* self = viewport;
Journal_Printf( stream, "lucViewport: %s\n", self->name );
Stream_Indent( stream );
/* Print Parent */
_Stg_Component_Print( self, stream );
lucDrawingObject_Register_PrintAllObjects( self->drawingObject_Register, stream );
Stg_Class_Print( self->camera, stream );
Journal_PrintValue( stream, self->margin );
Journal_PrintValue( stream, self->nearClipPlane );
Journal_PrintValue( stream, self->farClipPlane );
Journal_PrintString( stream, self->title );
Journal_PrintBool( stream, self->timestep );
Journal_PrintBool( stream, self->disabled );
Stream_UnIndent( stream );
}
void Stg_ComponentFactory_DestroyComponents( Stg_ComponentFactory* self, void* data ) {
Stg_Component* component = NULL;
Index component_I;
Stream* stream;
assert( self );
stream = self->infoStream;
if( self->componentDict ){
Journal_Printf( stream, "\nDestroying Stg_Components from the live-component register\n\n" );
Stream_Indent( stream );
for( component_I = 0; component_I < LiveComponentRegister_GetCount( self->LCRegister ); component_I++ ){
/* Grab component from register */
component = LiveComponentRegister_At( self->LCRegister, component_I );
if( component && !component->isDestroyed ){
Stg_Component_Destroy( component, data, True );
}
}
Stream_UnIndent( stream );
}
else{
Journal_Printf( stream, "No Stg_ComponentList found..!\n" );
}
}
/* Print implementation */
void _Stg_ObjectList_Print( void* objectList, struct Stream* stream ) {
Stg_ObjectList* self = (Stg_ObjectList*) objectList;
/* General info */
Journal_Printf( stream, "Stg_ObjectList (ptr):%p\n", (void*)self );
Stream_Indent( stream );
/* Print parent class */
_Stg_Class_Print( self, stream );
/* Virtual info */
Journal_Printf( stream, "_append(func ptr): %p\n", (void*)self->_append );
Journal_Printf( stream, "_prepend(func ptr): %p\n", (void*)self->_prepend );
Journal_Printf( stream, "_replaceAll(func ptr): %p\n", (void*)self->_replaceAll );
Journal_Printf( stream, "_replace(func ptr): %p\n", (void*)self->_replace );
Journal_Printf( stream, "_insertBefore(func ptr): %p\n", (void*)self->_insertBefore );
Journal_Printf( stream, "_insertAfter(func ptr): %p\n", (void*)self->_insertAfter );
Journal_Printf( stream, "_remove(func ptr): %p\n", (void*)self->_remove );
Journal_Printf( stream, "_getIndex(func ptr): %p\n", (void*)self->_getIndex );
Journal_Printf( stream, "_get(func ptr): %p\n", (void*)self->_get );
Journal_Printf( stream, "_allocMoreMemory(func ptr): %p\n", (void*)self->_allocMoreMemory );
Journal_Printf( stream, "_insertAtIndex(func ptr): %p\n", (void*)self->_insertAtIndex );
Journal_Printf( stream, "_removeByIndex(func ptr): %p\n", (void*)self->_removeByIndex );
Journal_Printf( stream, "_deleteAllObjects(func ptr): %p\n", (void*)self->_deleteAllObjects );
/* Stg_ObjectList */
Journal_Printf( stream, "_size: %u\n", self->_size );
Journal_Printf( stream, "_delta: %u\n", self->_delta );
Journal_Printf( stream, "_noJournalingInCopy: %u\n", self->_noJournalingInCopy );
Journal_Printf( stream, "count: %u\n", self->count );
Journal_Printf( stream, "data[0-%d]:\n", self->count );
Stg_ObjectList_PrintAllObjects( self, stream );
Stream_UnIndent( stream );
}
Stg_Component* _Stg_ComponentFactory_ConstructByNameWithKeyFallback(
void* cf,
Name parentComponentName,
Name componentTrialName,
Dictionary_Entry_Key fallbackKey,
Type type,
Bool isEssential,
void* data )
{
Stg_ComponentFactory* self = (Stg_ComponentFactory*)cf;
Stg_Component* component;
Stream* stream = self->infoStream;
Journal_PrintfL( stream, 2, "First Trying to find component by name '%s': ", componentTrialName );
component = LiveComponentRegister_Get( self->LCRegister, componentTrialName );
if (component) {
Journal_PrintfL( stream, 2, "Found.\n" );
if ( !component->isConstructed ) {
Journal_Printf( stream, "%s has not been constructed yet. Constructing now.\n", componentTrialName );
Stream_Indent( stream );
Stg_Component_AssignFromXML( component, self, data, True );
Stream_UnIndent( stream );
}
}
else {
Journal_PrintfL( stream, 2, "Not found.\n" );
Journal_PrintfL( stream, 2, "Fallback - Trying to find component by key '%s'.\n", fallbackKey );
component = self->constructByKey( self, parentComponentName, fallbackKey, type, isEssential, data );
}
return component;
}
void _SphericalGenerator_GenElementTypes( void* meshGenerator, Mesh* mesh )
{
SphericalGenerator* self = (SphericalGenerator*)meshGenerator;
Stream* stream;
unsigned nDomainEls;
unsigned e_i;
assert( self && Stg_CheckType( self, SphericalGenerator ) );
stream = Journal_Register( Info_Type, (Name)self->type );
Journal_Printf( stream, "Generating element types...\n" );
Stream_Indent( stream );
mesh->nElTypes = 1;
mesh->elTypes = Memory_Alloc_Array( Mesh_ElementType*, mesh->nElTypes, "Mesh::elTypes" );
mesh->elTypes[0] = (Mesh_ElementType*)Mesh_HexType_New();
Mesh_ElementType_SetMesh( mesh->elTypes[0], mesh );
nDomainEls = Mesh_GetDomainSize( mesh, Mesh_GetDimSize( mesh ) );
mesh->elTypeMap = Memory_Alloc_Array( unsigned, nDomainEls, "Mesh::elTypeMap" );
for( e_i = 0; e_i < nDomainEls; e_i++ )
mesh->elTypeMap[e_i] = 0;
Mesh_SetAlgorithms( mesh, Mesh_SphericalAlgorithms_New( "", NULL ) );
MPI_Barrier( self->mpiComm );
Journal_Printf( stream, "... element types are '%s',\n", mesh->elTypes[0]->type );
Journal_Printf( stream, "... mesh algorithm type is '%s',\n", mesh->algorithms->type );
Journal_Printf( stream, "... done.\n" );
Stream_UnIndent( stream );
}
void _FieldVariable_Print( void* _fieldVariable, Stream* stream ) {
FieldVariable* self = (FieldVariable*) _fieldVariable;
Journal_Printf( stream, "FieldVariable - '%s'\n", self->name );
Stream_Indent( stream );
_Stg_Component_Print( self, stream );
Journal_PrintPointer( stream, self->_interpolateValueAt );
Journal_PrintPointer( stream, self->_getMinGlobalFieldMagnitude );
Journal_PrintPointer( stream, self->_getMaxGlobalFieldMagnitude );
Journal_PrintPointer( stream, self->_cacheMinMaxGlobalFieldMagnitude );
Journal_PrintPointer( stream, self->_getMinAndMaxLocalCoords );
Journal_PrintPointer( stream, self->_getMinAndMaxGlobalCoords );
Journal_PrintValue( stream, self->fieldComponentCount );
Journal_PrintValue( stream, self->dim );
Journal_PrintBool( stream, self->isCheckpointedAndReloaded);
#ifdef LAM_MPI
Journal_PrintPointer( stream, self->communicator );
#elif defined( OPEN_MPI )
Journal_PrintPointer( stream, self->communicator );
#else
Journal_PrintValue( stream, self->communicator );
#endif
Journal_PrintPointer( stream, self->fieldVariable_Register );
Stream_UnIndent( stream );
}
void _SwarmDump_Execute( void* swarmDump, void* data ) {
SwarmDump* self = (SwarmDump*) swarmDump;
AbstractContext* context = Stg_CheckType( data, AbstractContext );
Stream* stream = Journal_Register( MPIStream_Type, Swarm_Type );
Particle_Index particleLocalCount;
SizeT particleSize;
Name filename;
Index swarm_I;
Swarm* swarm;
Stream* info = Journal_Register( Info_Type, self->type );
Processor_Index rank_I;
Journal_DPrintf( info, "Proc %d: beginning Swarm binary checkpoint in %s():\n", self->swarmList[0]->myRank, __func__ );
Stream_Indent( info );
for ( swarm_I = 0 ; swarm_I < self->swarmCount ; swarm_I++ ) {
swarm = self->swarmList[ swarm_I ];
particleLocalCount = swarm->particleLocalCount;
particleSize = (SizeT) swarm->particleExtensionMgr->finalSize;
if ( self->newFileEachTime ) {
if ( strlen(context->checkPointPrefixString) > 0 ) {
Stg_asprintf( &filename, "%s/%s.%s.%05d.dat", context->outputPath,
context->checkPointPrefixString, swarm->name, context->timeStep );
}
else {
Stg_asprintf( &filename, "%s/%s.%05d.dat", context->outputPath,
swarm->name, context->timeStep );
}
}
else {
if ( strlen(context->checkPointPrefixString) > 0 ) {
Stg_asprintf( &filename, "%s/%s.%s.dat", context->outputPath,
context->checkPointPrefixString, swarm->name );
}
else {
Stg_asprintf( &filename, "%s/%s.dat", context->outputPath, swarm->name );
}
}
for ( rank_I = 0; rank_I < swarm->nProc; rank_I++ ) {
if ( swarm->myRank == rank_I ) {
Journal_DPrintf( info, "Proc %d: for swarm \"%s\", dumping its %u particles of size %u bytes "
"each (= %g bytes total) to file %s\n", swarm->myRank, swarm->name, particleLocalCount,
particleSize, (float)(particleLocalCount * particleSize), filename );
}
MPI_Barrier( swarm->comm );
}
Stream_RedirectFile( stream, filename );
MPIStream_WriteAllProcessors( stream, swarm->particles, particleSize, (SizeT) particleLocalCount, swarm->comm );
Stream_CloseFile( stream );
Memory_Free( filename );
}
Stream_UnIndent( info );
Journal_DPrintf( info, "Proc %d: finished Swarm binary checkpoint.\n", self->swarmList[0]->myRank );
}
void _OneToOneMapper_Print( void* mapper, Stream* stream ) {
OneToOneMapper* self = (OneToOneMapper*)mapper;
_IntegrationPointMapper_Print( self, stream );
Stream_Indent( stream );
Stg_Class_Print( self->materialSwarm, stream );
Stream_UnIndent( stream );
}
void _Toolbox_Print( void* toolbox, Stream* stream ) {
Toolbox* self = (Toolbox*)toolbox;
Journal_Printf( stream, "Toolbox: %s\n", self->name );
Stream_Indent( stream );
/* Print parent */
_Module_Print( self, stream );
Stream_UnIndent( stream );
}
void _Plugin_Print( void* plugin, Stream* stream ) {
Plugin* self = (Plugin*)plugin;
Journal_Printf( stream, "Plugin: %s\n", self->name );
Stream_Indent( stream );
/* Print parent */
_Module_Print( self, stream );
Stream_UnIndent( stream );
}
void Dictionary_Entry_Value_Print( Dictionary_Entry_Value* self, Stream* stream ) {
Dictionary_Index index;
if( !self ) {
return;
}
switch( self->type ) {
case Dictionary_Entry_Value_Type_String:
Journal_Printf( stream, "\"%s\"", self->as.typeString );
return;
case Dictionary_Entry_Value_Type_Double:
Journal_Printf( stream, "%g", self->as.typeDouble );
return;
case Dictionary_Entry_Value_Type_UnsignedInt:
Journal_Printf( stream, "%u", self->as.typeUnsignedInt );
return;
case Dictionary_Entry_Value_Type_Int:
Journal_Printf( stream, "%d", self->as.typeInt );
return;
case Dictionary_Entry_Value_Type_UnsignedLong:
Journal_Printf( stream, "%ld", self->as.typeUnsignedLong );
return;
case Dictionary_Entry_Value_Type_Bool:
Journal_Printf( stream, "%s", Dictionary_Entry_Value_AsString( self ) );
return;
case Dictionary_Entry_Value_Type_List:
if (self->as.typeList->first) {
Dictionary_Entry_Value* cur = self->as.typeList->first;
Dictionary_Entry_Value_Print( cur, stream );
cur = cur->next;
while (cur) {
Journal_Printf( stream, ", " );
Dictionary_Entry_Value_Print( cur, stream );
cur = cur->next;
}
}
return;
case Dictionary_Entry_Value_Type_Struct:
Stream_Indent( stream );
for( index = 0; index < self->as.typeStruct->count; index++ ) {
Journal_Printf( stream, "\n");
Journal_Printf( stream, "%s: ", self->as.typeStruct->entryPtr[index]->key );
Dictionary_Entry_Value_Print( self->as.typeStruct->entryPtr[index]->value, stream );
}
Stream_UnIndent( stream );
return;
default: {
Stream* errorStream = Journal_Register( Error_Type, "Dictionary_Entry_Value" );
Journal_Firewall( False, errorStream, "In func %s: self->type '%d' is invalid.\n", __func__, self->type );
}
}
}
Stg_Component* _Stg_ComponentFactory_ConstructByName( void* cf, Name componentName, Type type, Bool isEssential, void* data ) {
Stg_ComponentFactory* self = (Stg_ComponentFactory*)cf;
Stg_Component* component;
Stream* stream = self->infoStream;
Journal_PrintfL( stream, 2, "Looking for %sessential component '%s': ", (isEssential ? "" : "non-"), componentName );
component = LiveComponentRegister_Get( self->LCRegister, componentName );
/* Checking */
if (component) {
Journal_PrintfL( stream, 2, "Found.\n" );
if ( !component->isConstructed ) {
/* Journal_Printf( stream, "%s has not been constructed yet. Constructing now.\n", componentName ); */
Stream_Indent( stream );
Stg_Component_AssignFromXML( component, self, data, True );
Stream_UnIndent( stream );
}
Stg_Class_CheckType( component, type );
}
else {
Name redirect;
/* If we can find the component's name in the root dictionary, use that value instead. */
if( self->rootDict ) {
redirect = Dictionary_GetString_WithDefault( self->rootDict, componentName, "" );
if( strcmp( redirect, "" ) ) {
componentName = redirect;
return self->constructByName( self, componentName, type, isEssential, data );
}
}
Journal_PrintfL( stream, 2, "Not found.\n" );
if ( isEssential ) {
Stream* errorStream = Journal_Register( Error_Type, self->type );
Journal_Printf( errorStream, "In func %s: Cannot find essential component '%s'.\n", __func__, componentName );
Journal_Printf( errorStream, "Could you have meant one of these?\n" );
Stream_Indent( errorStream );
LiveComponentRegister_PrintSimilar( self->LCRegister, componentName, errorStream, 5 );
Journal_Firewall( 0, errorStream, "" );
}
}
return component;
}
void _SwarmDump_Print( void* _swarmDump, Stream* stream ) {
SwarmDump* self = (SwarmDump*) _swarmDump;
Index swarm_I;
Journal_Printf( stream, "SwarmDump - '%s'\n", self->name );
Stream_Indent( stream );
_Stg_Component_Print( self, stream );
for ( swarm_I = 0 ; swarm_I < self->swarmCount ; swarm_I++ ) {
Journal_Printf( stream, "Swarm - '%s'\n", self->swarmList[ swarm_I ]->name );
}
Stream_UnIndent( stream );
}
void _UnionParticleLayout_Print( void* unionParticleLayout, Stream* stream ) {
UnionParticleLayout* self = (UnionParticleLayout*)unionParticleLayout;
/* General info */
Journal_Printf( stream, "UnionParticleLayout (ptr): %p:\n", self );
Stream_Indent( stream );
/* Parent class info */
_GlobalParticleLayout_Print( self, stream );
/* UnionParticleLayout */
Stream_UnIndent( stream );
}
void _ManualParticleLayout_Print( void* manualParticleLayout, Stream* stream ) {
ManualParticleLayout* self = (ManualParticleLayout*)manualParticleLayout;
/* General info */
Journal_Printf( stream, "ManualParticleLayout (ptr): %p:\n", self );
Stream_Indent( stream );
/* Parent class info */
_GlobalParticleLayout_Print( self, stream );
/* ManualParticleLayout */
Stream_UnIndent( stream );
}
void _NamedObject_Register_Print( void* namedObjectRegister, struct Stream* stream ) {
NamedObject_Register* self = (NamedObject_Register*)namedObjectRegister;
/* General info */
Journal_Printf( stream, "NamedObject_Register (ptr): %p\n", self);
Stream_Indent( stream );
/* Use parent print */
_Stg_Class_Print( self, stream );
/* Print the list of registered objects */
Stg_Class_Print( self->objects, stream );
Stream_UnIndent( stream );
}
void _VoxelDataHandler_Geomodeller_Print( void* voxelDataHandler, Stream* stream ) {
VoxelDataHandler_Geomodeller* self = (VoxelDataHandler_Geomodeller*)voxelDataHandler;
/* General info */
Journal_Printf( stream, "VoxelDataHandler_Geomodeller (ptr): %p:\n", self );
Stream_Indent( stream );
/* Parent class info */
_VoxelDataHandler_Abstract_Print( self, stream );
/* VoxelDataHandler_Geomodeller */
Journal_Printf( stream, "filename: %s\n", self->filename );
Stream_UnIndent( stream );
}
void _FileParticleLayout_Print( void* particleLayout, Stream* stream ) {
FileParticleLayout* self = (FileParticleLayout*)particleLayout;
/* General info */
Journal_Printf( stream, "FileParticleLayout (ptr): %p:\n", self );
Stream_Indent( stream );
/* Parent class info */
_GlobalParticleLayout_Print( self, stream );
/* FileParticleLayout */
Journal_Printf( stream, "filename: %s\n", self->filename );
Journal_Printf( stream, "file (ptr): %p\n", self->file );
Stream_UnIndent( stream );
}
void _Stg_Class_Print( void* _class, struct Stream* stream ) {
Stg_Class* self = (Stg_Class*)_class;
Journal_Firewall( (Bool)stream, stream, "Attempting to Print to stream that is NULL\n" );
Journal_Firewall( (Bool)self, stream, "Attempting to Print class that is NULL\n" );
Journal_Printf( stream, "Stg_Class (ptr): %p\n", self );
Stream_Indent( stream );
Journal_Printf( stream, "sizeOfSelf: %lu\n", self->_sizeOfSelf );
Journal_Printf( stream, "_deleteSelf: %s\n", self->_deleteSelf ? "Yes" : "No" );
Journal_Printf( stream, "type: %s\n", self->type == Type_Invalid ? "Invalid" : self->type );
Journal_Printf( stream, "_delete (func ptr): %p\n", self->_delete );
Journal_Printf( stream, "_print (func ptr): %p\n", self->_print );
Journal_Printf( stream, "_copy (func ptr): %p\n", self->_copy );
Stream_UnIndent( stream );
}
void _TimeIntegrand_Print( void* timeIntegrand, Stream* stream ) {
TimeIntegrand* self = (TimeIntegrand*)timeIntegrand;
/* General info */
Journal_DPrintf( self->debug, "TimeIntegrand - '%s'\n", self->name );
Journal_PrintPointer( stream, self );
Stream_Indent( stream );
/* Print parent */
_Stg_Component_Print( self, stream );
/* Virtual info */
/* Regular Info */
Stream_UnIndent( stream );
}
void _ConvexHull_AssignFromXML( void* convexHull, Stg_ComponentFactory* cf, void* data ) {
ConvexHull* self = (ConvexHull*)convexHull;
Index vertexCount;
Index vertex_I;
Coord_List vertexList;
double* coord;
Dictionary_Entry_Value* optionSet;
Dictionary_Entry_Value* optionsList;
Dictionary* dictionary = Dictionary_GetDictionary( cf->componentDict, self->name );
Stream* stream = cf->infoStream;
_Stg_Shape_AssignFromXML( self, cf, data );
optionsList = Dictionary_Get( dictionary, (Dictionary_Entry_Key)"vertices" );
Journal_Firewall( optionsList != NULL,
Journal_Register( Error_Type, (Name)self->type ),
"In func %s: The list 'vertices' specifying the convexHull is NULL.\n", __func__);
vertexCount = Dictionary_Entry_Value_GetCount(optionsList);
Journal_Firewall( ( self->dim == 2 && vertexCount < 4 ) || ( self->dim == 3 && vertexCount < 5 ),
Journal_Register( Error_Type, (Name)self->type ),
"In func %s: Sorry, but we got lazy, you can only specify 3 (2D) or 4 (3D) points. "
"Please feel free to hassle developers for this feature.\n", __func__);
/* Allocate space */
vertexList = Memory_Alloc_Array( Coord , vertexCount, "Vertex Array" );
memset( vertexList, 0, vertexCount * sizeof(Coord) );
Stream_Indent( stream );
for ( vertex_I = 0 ; vertex_I < vertexCount ; vertex_I++) {
optionSet = Dictionary_Entry_Value_GetElement(optionsList, vertex_I );
coord = vertexList[vertex_I];
/* Read Vertex */
coord[ I_AXIS ] = Dictionary_Entry_Value_AsDouble( Dictionary_Entry_Value_GetMember( optionSet, (Dictionary_Entry_Key)"x") );
coord[ J_AXIS ] = Dictionary_Entry_Value_AsDouble( Dictionary_Entry_Value_GetMember( optionSet, (Dictionary_Entry_Key)"y") );
coord[ K_AXIS ] = Dictionary_Entry_Value_AsDouble( Dictionary_Entry_Value_GetMember( optionSet, (Dictionary_Entry_Key)"z"));
optionSet = optionSet->next;
}
Stream_UnIndent( stream );
_ConvexHull_Init( self, vertexList, vertexCount);
}
//void MultigridSolver_LevelCycle( MultigridSolver* self, unsigned levelInd, Vector* rhs, Vector* solution ) {
void MultigridSolver_LevelCycle( MultigridSolver* self, unsigned levelInd, Vec rhs, Vec solution ) {
MultigridSolver_Level* level;
assert( self );
assert( levelInd < self->nLevels );
Stream_Indent( self->stream );
level = self->levels + levelInd;
if( level->nDownIts ) {
Journal_Printf( self->stream, "Down-solve on level %d... ", levelInd );
//MatrixSolver_Solve( level->downSolver, rhs, solution );
//Journal_Printf( self->stream, "residual: %.10lf\n", MatrixSolver_GetResidualNorm( level->downSolver ) );
KSPSolve( level->downSolver->ksp, rhs, solution );
Journal_Printf( self->stream, "residual: %.10lf\n", _GetResidualNorm( level->downSolver ) );
}
if( levelInd > 0 ) {
MultigridSolver_Level* nextLevel;
unsigned c_i;
nextLevel = self->levels + (levelInd - 1);
if( level->R == level->P )
//Matrix_TransposeMultiply( level->R, MatrixSolver_GetResidual( level->downSolver ), nextLevel->workRHS );
MatMultTranspose( level->R, _GetResidual( level->downSolver ), nextLevel->workRHS );
else
//Matrix_Multiply( level->R, MatrixSolver_GetResidual( level->downSolver ), nextLevel->workRHS );
MatMult( level->R, _GetResidual( level->downSolver ), nextLevel->workRHS );
for( c_i = 0; c_i < level->nCycles; c_i++ )
MultigridSolver_LevelCycle( self, levelInd - 1, nextLevel->workRHS, nextLevel->workSol );
//Matrix_MultiplyAdd( level->P, nextLevel->workSol, solution, solution );
MatMultAdd( level->P, nextLevel->workSol, solution, solution );
}
if( level->nUpIts ) {
Journal_Printf( self->stream, "Up-solve on level %d... ", levelInd );
//MatrixSolver_Solve( level->upSolver, rhs, solution );
//Journal_Printf( self->stream, "residual: %.10lf\n", MatrixSolver_GetResidualNorm( level->upSolver ) );
KSPSolve( level->upSolver->ksp, rhs, solution );
Journal_Printf( self->stream, "residual: %.10lf\n", _GetResidualNorm( level->upSolver ) );
}
Stream_UnIndent( self->stream );
}
void _SwarmVariable_Print( void* _swarmVariable, Stream* stream ) {
SwarmVariable* self = (SwarmVariable*) _swarmVariable;
Journal_Printf( stream, "SwarmVariable - '%s'\n", self->name );
Stream_Indent( stream );
_Stg_Component_Print( self, stream );
Journal_PrintPointer( stream, self->_valueAt );
Journal_PrintPointer( stream, self->_getMinGlobalMagnitude );
Journal_PrintPointer( stream, self->_getMaxGlobalMagnitude );
Journal_Printf( stream, "Swarm - '%s'\n", self->swarm->name );
if ( self->variable != NULL )
Journal_Printf( stream, "Variable - '%s'\n", self->variable->name );
Journal_PrintValue( stream, self->dofCount );
Journal_PrintPointer( stream, self->swarmVariable_Register );
Stream_UnIndent( stream );
}
void _ToolboxesManager_Print( void* toolboxesManager, Stream* stream ) {
ToolboxesManager* self = (ToolboxesManager*)toolboxesManager;
/* General info */
Journal_Printf( (void*) stream, "Toolboxes (ptr): %p\n", self );
if( Stg_ObjectList_Count(self->initTB) > 0 ) {
Index i;
Journal_Printf( stream, "Initialised Modules:\n" );
Stream_Indent( stream );
for( i = 0; i < Stg_ObjectList_Count(self->initTB) ; ++i ) {
Journal_Printf( stream, "%s\n", self->initTB->data[i]->name );
}
Stream_UnIndent( stream );
}
/* Print parent */
_ModulesManager_Print( self, stream );
}
void _PeriodicBoundariesManager_Print( void* perBCsManager, Stream* stream ) {
PeriodicBoundariesManager* self = (PeriodicBoundariesManager*)perBCsManager;
Index perBoundary_I = 0;
/* General info */
Journal_Printf( stream, "PeriodicBoundariesManager (ptr): %p\n", self );
/* Print parent */
_Stg_Component_Print( self, stream );
Journal_Printf( stream, "%d periodic boundaries registered: %p\n", self );
Stream_Indent( stream );
for ( perBoundary_I = 0; perBoundary_I < self->count; perBoundary_I++ ) {
Journal_Printf( stream, "Boundary %d: Axis %d, Min=%f, Max=%f\n", perBoundary_I,
self->boundaries[perBoundary_I].axis,
self->boundaries[perBoundary_I].minWall,
self->boundaries[perBoundary_I].maxWall );
}
Stream_UnIndent( stream );
}
