Ejemplo n.º 1
0
END_TEST


START_TEST (test_SBMLConvert_convertToL3_defaultUnits)
{
  SBMLDocument_t *d = SBMLDocument_createWithLevelAndVersion(1, 2);
  Model_t        *m = SBMLDocument_createModel(d);

  const char   *sid = "C";
  Compartment_t  *c = Model_createCompartment(m);

  Compartment_setId   ( c, sid );
  Compartment_setSize ( c, 1.2 ); 
  Compartment_setUnits( c, "volume");

  fail_unless(Model_getNumUnitDefinitions(m) == 0);
  
  fail_unless( SBMLDocument_setLevelAndVersion(d, 3, 1) == 1, NULL);


  fail_unless(Model_getNumUnitDefinitions(m) == 2);

  UnitDefinition_t *ud = Model_getUnitDefinition(m, 0);

  fail_unless (ud != NULL);
  fail_unless (!strcmp(UnitDefinition_getId( ud), "volume"));
  fail_unless(UnitDefinition_getNumUnits(ud) == 1);

  Unit_t * u = UnitDefinition_getUnit(ud, 0);

  fail_unless(Unit_getKind(u) == UNIT_KIND_LITRE);
  fail_unless(Unit_getExponent(u) == 1);
  fail_unless(Unit_getMultiplier(u) == 1);
  fail_unless(Unit_getScale(u) == 0);

  ud = Model_getUnitDefinition(m, 1);

  fail_unless (ud != NULL);
  fail_unless (!strcmp(UnitDefinition_getId( ud), "time"));
  fail_unless(UnitDefinition_getNumUnits(ud) == 1);
  
  u = UnitDefinition_getUnit(ud, 0);

  fail_unless(Unit_getKind(u) == UNIT_KIND_SECOND);
  fail_unless(Unit_getExponent(u) == 1);
  fail_unless(Unit_getMultiplier(u) == 1);
  fail_unless(Unit_getScale(u) == 0);

  fail_unless(!strcmp(Model_getTimeUnits(m), "time"));

  SBMLDocument_free(d);
}
END_TEST


START_TEST (test_UnitDefinition_removeUnit)
{
  Unit_t *o1, *o2, *o3;

  o1 = UnitDefinition_createUnit(UD);
  o2 = UnitDefinition_createUnit(UD);
  o3 = UnitDefinition_createUnit(UD);

  fail_unless( UnitDefinition_removeUnit(UD,0) == o1 );
  fail_unless( UnitDefinition_getNumUnits(UD)  == 2  );
  fail_unless( UnitDefinition_removeUnit(UD,0) == o2 );
  fail_unless( UnitDefinition_getNumUnits(UD)  == 1  );
  fail_unless( UnitDefinition_removeUnit(UD,0) == o3 );
  fail_unless( UnitDefinition_getNumUnits(UD)  == 0  );

  Unit_free(o1);
  Unit_free(o2);
  Unit_free(o3);
}
END_TEST


START_TEST (test_UnitDefinition_addUnit)
{
  Unit_t *u   = Unit_create(2, 4);
  Unit_setKind(u, UNIT_KIND_MOLE);
  UnitDefinition_addUnit(UD, u);

  fail_unless( UnitDefinition_getNumUnits(UD) == 1 );

  Unit_free(u);
}
END_TEST


START_TEST (test_UnitDefinition_createUnit)
{
  UnitDefinition_t *m = UnitDefinition_create(2, 2);
  
  Unit_t *p = UnitDefinition_createUnit(m);

  fail_unless( UnitDefinition_getNumUnits(m) == 1);
  fail_unless( SBase_getLevel((SBase_t *) (p)) == 2 );
  fail_unless( SBase_getVersion((SBase_t *) (p)) == 2 );

  UnitDefinition_free(m);
}
END_TEST


START_TEST (test_UnitDefinition_addUnit4)
{
  UnitDefinition_t *m = UnitDefinition_create(2, 2);
  Unit_t *p = NULL; 

  int i = UnitDefinition_addUnit(m, p);

  fail_unless( i == LIBSBML_OPERATION_FAILED);
  fail_unless( UnitDefinition_getNumUnits(m) == 0);

  UnitDefinition_free(m);
}
END_TEST


//START_TEST (test_UnitDefinition_createWith)
//{
//  UnitDefinition_t *ud = UnitDefinition_createWith("mmls", "");
//
//
//  fail_unless( SBase_getTypeCode  ((SBase_t *) ud) == SBML_UNIT_DEFINITION );
//  fail_unless( SBase_getMetaId    ((SBase_t *) ud) == NULL );
//  fail_unless( SBase_getNotes     ((SBase_t *) ud) == NULL );
//  fail_unless( SBase_getAnnotation((SBase_t *) ud) == NULL );
//
//  fail_unless( UnitDefinition_getName(ud) == NULL );
//
//  fail_unless( !strcmp(UnitDefinition_getId(ud), "mmls") );
//  fail_unless(UnitDefinition_isSetId(ud));
//
//  fail_unless(UnitDefinition_getNumUnits(ud) == 0);
//
//  UnitDefinition_free(ud);
//}
//END_TEST


START_TEST (test_UnitDefinition_createWithName)
{
  UnitDefinition_t *ud = UnitDefinition_create(2, 4);
  UnitDefinition_setName(ud, "mmol_per_liter_per_sec");


  fail_unless( SBase_getTypeCode  ((SBase_t *) ud) == SBML_UNIT_DEFINITION );
  fail_unless( SBase_getMetaId    ((SBase_t *) ud) == NULL );
  fail_unless( SBase_getNotes     ((SBase_t *) ud) == NULL );
  fail_unless( SBase_getAnnotation((SBase_t *) ud) == NULL );

  fail_unless( UnitDefinition_getId(ud) == NULL );

  fail_unless( !strcmp(UnitDefinition_getName(ud), "mmol_per_liter_per_sec"),
               NULL );

  fail_unless(UnitDefinition_isSetName(ud));

  fail_unless(UnitDefinition_getNumUnits(ud) == 0);

  UnitDefinition_free(ud);
}
END_TEST


START_TEST (test_UnitDefinition_addUnit3)
{
  UnitDefinition_t *m = UnitDefinition_create(2, 2);
  Unit_t *p 
    = Unit_create(1, 2);
  Unit_setKind(p, UNIT_KIND_MOLE);

  int i = UnitDefinition_addUnit(m, p);

  fail_unless( i == LIBSBML_LEVEL_MISMATCH);
  fail_unless( UnitDefinition_getNumUnits(m) == 0);

  Unit_free(p);
  UnitDefinition_free(m);
}
END_TEST


START_TEST (test_UnitDefinition_getUnit)
{
  Unit_t *mole   = Unit_create(2, 4);
  Unit_t *litre  = Unit_create(2, 4);
  Unit_t *second = Unit_create(2, 4);


  Unit_setKind( mole  , UnitKind_forName("mole")   );
  Unit_setKind( litre , UnitKind_forName("litre")  );
  Unit_setKind( second, UnitKind_forName("second") );

  Unit_setScale   (mole  , -3);
  Unit_setExponent(litre , -1);
  Unit_setExponent(second, -1);

  UnitDefinition_addUnit( UD, mole   );
  UnitDefinition_addUnit( UD, litre  );
  UnitDefinition_addUnit( UD, second );

  Unit_free(mole);
  Unit_free(litre);
  Unit_free(second);

  fail_unless( UnitDefinition_getNumUnits(UD) == 3 );

  mole   = UnitDefinition_getUnit(UD, 0);
  litre  = UnitDefinition_getUnit(UD, 1);
  second = UnitDefinition_getUnit(UD, 2);

  fail_unless( Unit_getKind(mole)   == UNIT_KIND_MOLE   );
  fail_unless( Unit_getKind(litre)  == UNIT_KIND_LITRE  );
  fail_unless( Unit_getKind(second) == UNIT_KIND_SECOND );

  fail_unless( Unit_getScale(mole)      == -3 );
  fail_unless( Unit_getExponent(litre)  == -1 );
  fail_unless( Unit_getExponent(second) == -1 );

}
END_TEST


START_TEST (test_UnitDefinition_addUnit1)
{
  UnitDefinition_t *m = UnitDefinition_create(2, 2);
  Unit_t *p 
    = Unit_create(2, 2);

  int i = UnitDefinition_addUnit(m, p);

  fail_unless( i == LIBSBML_INVALID_OBJECT);

  Unit_setKind(p, UNIT_KIND_MOLE);
  i = UnitDefinition_addUnit(m, p);

  fail_unless( i == LIBSBML_OPERATION_SUCCESS);
  fail_unless( UnitDefinition_getNumUnits(m) == 1);

  Unit_free(p);
  UnitDefinition_free(m);
}
Ejemplo n.º 10
0
END_TEST


START_TEST (test_SBMLConvert_convertFromL3_modelUnits)
{
  UnitDefinition_t *ud;
  SBMLDocument_t *d = SBMLDocument_createWithLevelAndVersion(3, 1);
  Model_t        *m = SBMLDocument_createModel(d);
  Model_setVolumeUnits(m, "litre");

  fail_unless(Model_getNumUnitDefinitions(m) == 0);
  
  fail_unless(SBMLDocument_setLevelAndVersionNonStrict(d, 1, 2) == 1);

  m = SBMLDocument_getModel(d);

  fail_unless(Model_getNumUnitDefinitions(m) == 1);

  ud = Model_getUnitDefinition(m, 0);

  fail_unless(!strcmp(UnitDefinition_getId(ud), "volume"));
  fail_unless(UnitDefinition_getNumUnits(ud) == 1);
  fail_unless(Unit_getKind(UnitDefinition_getUnit(ud, 0)) == UNIT_KIND_LITRE );
}