/*!
* \return Woolz error number.
* \ingroup WlzExtFF
* \brief Writes the given Woolz object to the given stream using the
* '.ipl' file format.
* \param fP Output file stream.
* \param obj Given woolz object.
*/
WlzErrorNum WlzEffWriteObjIPL(FILE *fP, WlzObject *obj)
{
WlzIVertex3 size;
WlzErrorNum errNum = WLZ_ERR_WRITE_INCOMPLETE;
WlzIVertex3 origin;
unsigned char ***data = NULL;
WlzEffIPLHeader header;
if(fP == NULL)
{
errNum = WLZ_ERR_PARAM_NULL;
}
else if(obj == NULL)
{
errNum = WLZ_ERR_OBJECT_NULL;
}
else if(obj->type != WLZ_3D_DOMAINOBJ)
{
errNum = WLZ_ERR_OBJECT_TYPE;
}
else if(obj->domain.core == NULL)
{
errNum = WLZ_ERR_DOMAIN_NULL;
}
else if(obj->domain.core->type != WLZ_PLANEDOMAIN_DOMAIN)
{
errNum = WLZ_ERR_DOMAIN_TYPE;
}
else if(obj->values.core == NULL)
{
errNum = WLZ_ERR_VALUES_NULL;
}
else if(obj->values.core->type != WLZ_VOXELVALUETABLE_GREY)
{
errNum = WLZ_ERR_VALUES_TYPE;
}
else
{
origin.vtX = obj->domain.p->kol1;
origin.vtY = obj->domain.p->line1;
origin.vtZ = obj->domain.p->plane1;
size.vtX = obj->domain.p->lastkl - origin.vtX + 1;
size.vtY = obj->domain.p->lastln - origin.vtY + 1;
size.vtZ = obj->domain.p->lastpl - origin.vtZ + 1;
if((size.vtX <= 0) || (size.vtY <= 0) ||
(size.vtZ <= 0))
{
errNum = WLZ_ERR_DOMAIN_DATA;
}
else
{
errNum = WlzToArray3D((void ****)&data, obj, size, origin,
0, WLZ_GREY_UBYTE);
}
}
if(errNum == WLZ_ERR_NONE)
{
errNum = WlzEffHeadWriteIPL(&header, fP);
}
if(errNum == WLZ_ERR_NONE)
{
/* write the data */
}
if(data)
{
Alc3Free((void ***)data);
}
return(errNum);
}
/*!
* \return Woolz error code.
* \ingroup WlzExtFF
* \brief Writes the given Woolz 3D domain object with values to
* the given file using the Amira lattice (.am file) format.
* \param fP Output file pointer
* \param obj Object to be written.
*/
static WlzErrorNum WlzEffAmWrite3DDomObj(FILE *fP, WlzObject *obj)
{
size_t dataCnt,
dataSz;
WlzDBox3 bbD;
WlzIBox3 bbI;
WlzIVertex3 sz,
org;
WlzDVertex3 vSz;
char *dateS,
*dataTypeS;
time_t tTime;
WlzGreyType gType;
void ***data = NULL;
WlzErrorNum errNum = WLZ_ERR_UNIMPLEMENTED;
if(obj->domain.core->type != WLZ_PLANEDOMAIN_DOMAIN)
{
errNum = WLZ_ERR_DOMAIN_TYPE;
}
else if(obj->values.core == NULL)
{
errNum = WLZ_ERR_VALUES_NULL;
}
else if(obj->values.core->type != WLZ_VOXELVALUETABLE_GREY)
{
errNum = WLZ_ERR_VALUES_TYPE;
}
else
{
bbI = WlzBoundingBox3I(obj, &errNum);
}
if(errNum == WLZ_ERR_NONE)
{
tTime = time(NULL);
dateS = ctime(&tTime);
*(dateS + strlen(dateS) - 1) = '\0';
}
if(errNum == WLZ_ERR_NONE)
{
vSz = WlzVozelSz(obj, &errNum);
}
if(errNum == WLZ_ERR_NONE)
{
bbD.xMin = bbI.xMin * vSz.vtX;
bbD.xMax = bbI.xMax * vSz.vtX;
bbD.yMin = bbI.yMin * vSz.vtY;
bbD.yMax = bbI.yMax * vSz.vtY;
bbD.zMin = bbI.zMin * vSz.vtZ;
bbD.zMax = bbI.zMax * vSz.vtZ;
sz.vtX = bbI.xMax - bbI.xMin + 1;
sz.vtY = bbI.yMax - bbI.yMin + 1;
sz.vtZ = bbI.zMax - bbI.zMin + 1;
org.vtX = bbI.xMin;
org.vtY = bbI.yMin;
org.vtZ = bbI.zMin;
gType = WlzGreyTypeFromObj(obj, &errNum);
}
if(errNum == WLZ_ERR_NONE)
{
switch(gType)
{
case WLZ_GREY_SHORT:
dataTypeS = "short";
break;
case WLZ_GREY_UBYTE:
dataTypeS = "byte";
break;
default:
errNum = WLZ_ERR_GREY_TYPE;
break;
}
}
if(errNum == WLZ_ERR_NONE)
{
if(fprintf(fP,
"# AmiraMesh 3D BINARY 2.0\n"
"# WlzExtFF\n"
"# CreationDate: %s\n"
"\n"
"define Lattice %d %d %d\n"
"\n"
"Parameters {\n"
" Content \"%dx%dx%d %s, uniform coordinates\",\n"
" BoundingBox %g %g %g %g %g %g,\n"
" CoordType \"uniform\"\n"
"}\n"
"\n"
"Lattice { %s Data } @1\n"
"\n"
"# Data section follows\n"
"@1\n",
dateS,
sz.vtX, sz.vtY, sz.vtZ,
sz.vtX, sz.vtY, sz.vtZ, dataTypeS,
bbD.xMin, bbD.xMax, bbD.yMin, bbD.yMax, bbD.zMin, bbD.zMax,
dataTypeS) <= 0)
{
errNum = WLZ_ERR_WRITE_INCOMPLETE;
}
}
if(errNum == WLZ_ERR_NONE)
{
errNum = WlzToArray3D(&data, obj, sz, org, 0, gType);
}
if(errNum == WLZ_ERR_NONE)
{
dataCnt = sz.vtX * sz.vtY * sz.vtZ;
switch(gType)
{
case WLZ_GREY_SHORT:
dataSz = 2;
break;
case WLZ_GREY_UBYTE:
dataSz = 1;
break;
default:
break;
}
if(fwrite(**data, dataSz, dataCnt, fP) != dataSz * dataCnt)
{
errNum = WLZ_ERR_WRITE_INCOMPLETE;
}
}
(void )Alc3Free(data);
return(errNum);
}
/*!
* \return Woolz error code.
* \ingroup WlzExtFF
* \brief Writes the given Woolz object to the given file(s)
* using the ANALYZE 7.5 file format. The given file name is
* used to generate the '.hdr' and '.img' filenames.
* \param gvnFileName Given file name with .hdr, .img or no
* extension.
* \param obj Given woolz object.
*/
WlzErrorNum WlzEffWriteObjAnl(const char *gvnFileName, WlzObject *obj)
{
int cnt = 0;
double dMin,
dMax;
FILE *fP = NULL;
void *data = NULL;
WlzGreyP dataP;
WlzEffAnlDsr dsr;
WlzGreyType gType;
WlzVertex org,
sz;
char *fileName = NULL,
*hdrFileName = NULL,
*imgFileName = NULL;
WlzErrorNum errNum = WLZ_ERR_NONE;
dataP.v = NULL;
if((gvnFileName == NULL) || (*gvnFileName == '\0'))
{
errNum = WLZ_ERR_PARAM_NULL;
}
else if(obj == NULL)
{
errNum = WLZ_ERR_OBJECT_NULL;
}
else if(obj->domain.core == NULL)
{
errNum = WLZ_ERR_DOMAIN_NULL;
}
else if(obj->values.core == NULL)
{
errNum = WLZ_ERR_VALUES_NULL;
}
else
{
errNum = WlzEffAnlFileNames(&fileName, &hdrFileName, &imgFileName,
gvnFileName);
}
/* Fill in the ANALYZE file header data structures. */
if(errNum == WLZ_ERR_NONE)
{
(void )memset(&dsr, 0, sizeof(WlzEffAnlDsr));
switch(obj->type)
{
case WLZ_2D_DOMAINOBJ:
org.i2.vtX = obj->domain.i->kol1;
org.i2.vtY = obj->domain.i->line1;
sz.i2.vtX = obj->domain.i->lastkl - org.i2.vtX + 1;
sz.i2.vtY = obj->domain.i->lastln - org.i2.vtY + 1;
if((sz.i2.vtX <= 0) || (sz.i2.vtY <= 0))
{
errNum = WLZ_ERR_DOMAIN_DATA;
}
else
{
dsr.dim.dim[0] = 2;
dsr.dim.dim[1] = sz.i2.vtX;
dsr.dim.dim[2] = sz.i2.vtY;
dsr.dim.pixdim[0] = 2;
dsr.dim.pixdim[1] = 1.0;
dsr.dim.pixdim[2] = 1.0;
}
break;
case WLZ_3D_DOMAINOBJ:
org.i3.vtX = obj->domain.p->kol1;
org.i3.vtY = obj->domain.p->line1;
org.i3.vtZ = obj->domain.p->plane1;
sz.i3.vtX = obj->domain.p->lastkl - org.i3.vtX + 1;
sz.i3.vtY = obj->domain.p->lastln - org.i3.vtY + 1;
sz.i3.vtZ = obj->domain.p->lastpl - org.i3.vtZ + 1;
if((sz.i3.vtX <= 0) || (sz.i3.vtY <= 0) || (sz.i3.vtZ <= 0))
{
errNum = WLZ_ERR_DOMAIN_DATA;
}
else
{
dsr.dim.dim[0] = 3;
dsr.dim.dim[1] = sz.i3.vtX;
dsr.dim.dim[2] = sz.i3.vtY;
dsr.dim.dim[3] = sz.i3.vtZ;
dsr.dim.pixdim[0] = 3;
dsr.dim.pixdim[1] = obj->domain.p->voxel_size[0];
dsr.dim.pixdim[2] = obj->domain.p->voxel_size[1];
dsr.dim.pixdim[3] = obj->domain.p->voxel_size[2];
}
break;
default:
errNum = WLZ_ERR_OBJECT_TYPE;
break;
}
}
if(errNum == WLZ_ERR_NONE)
{
(void )WlzGreyStats(obj, &gType, &dMin, &dMax, NULL, NULL, NULL, NULL,
&errNum);
}
if(errNum == WLZ_ERR_NONE)
{
dsr.dim.glMax = (int )ceil(dMax);
dsr.dim.glMin = (int )floor(dMin);
switch(gType)
{
case WLZ_GREY_INT:
dsr.dim.dataType = WLZEFF_ANL_DT_SIGNED_INT;
dsr.dim.bitPix = 32;
break;
case WLZ_GREY_SHORT:
dsr.dim.dataType = WLZEFF_ANL_DT_SIGNED_SHORT;
dsr.dim.bitPix = 16;
break;
case WLZ_GREY_UBYTE:
dsr.dim.dataType = WLZEFF_ANL_DT_UNSIGNED_CHAR;
dsr.dim.bitPix = 8;
break;
case WLZ_GREY_FLOAT:
dsr.dim.dataType = WLZEFF_ANL_DT_FLOAT;
dsr.dim.bitPix = 32;
break;
case WLZ_GREY_DOUBLE:
dsr.dim.dataType = WLZEFF_ANL_DT_DOUBLE;
dsr.dim.bitPix = 64;
break;
default:
errNum = WLZ_ERR_GREY_TYPE;
break;
}
}
if(errNum == WLZ_ERR_NONE)
{
dsr.hk.hdrSz = 348;
dsr.hk.regular = 'r';
dsr.hk.extents = 16384;
(void )strcpy(dsr.hist.descrip, "Converted from Woolz");
(void )strcpy(dsr.hist.originator, "Woolz");
(void )strcpy(dsr.hist.generated, "Woolz");
}
/* Get Woolz object's values as an array. */
if(WLZ_ERR_NONE == errNum)
{
switch(obj->type)
{
case WLZ_2D_DOMAINOBJ:
cnt = sz.i2.vtX * sz.i2.vtY;
errNum = WlzToArray2D((void ***)&data, obj, sz.i2, org.i2, 0, gType);
if(errNum == WLZ_ERR_NONE)
{
switch(gType)
{
case WLZ_GREY_INT:
dataP.inp = *(int **)data;
break;
case WLZ_GREY_SHORT:
dataP.shp = *(short **)data;
break;
case WLZ_GREY_UBYTE:
dataP.ubp = *(WlzUByte **)data;
break;
case WLZ_GREY_FLOAT:
dataP.flp = *(float **)data;
break;
case WLZ_GREY_DOUBLE:
dataP.dbp = *(double **)data;
break;
default:
errNum = WLZ_ERR_GREY_TYPE;
break;
}
}
break;
case WLZ_3D_DOMAINOBJ:
cnt = sz.i3.vtX * sz.i3.vtY * sz.i3.vtZ;
errNum = WlzToArray3D((void ****)&data, obj, sz.i3, org.i3, 0, gType);
if(errNum == WLZ_ERR_NONE)
{
switch(gType)
{
case WLZ_GREY_INT:
dataP.inp = **(int ***)data;
break;
case WLZ_GREY_SHORT:
dataP.shp = **(short ***)data;
break;
case WLZ_GREY_UBYTE:
dataP.ubp = **(WlzUByte ***)data;
break;
case WLZ_GREY_FLOAT:
dataP.flp = **(float ***)data;
break;
case WLZ_GREY_DOUBLE:
dataP.dbp = **(double ***)data;
break;
default:
errNum = WLZ_ERR_GREY_TYPE;
break;
}
}
break;
default:
errNum = WLZ_ERR_OBJECT_TYPE;
break;
}
}
/* Open the ANALYZE .hdr file and write the header information. */
if(errNum == WLZ_ERR_NONE)
{
if((fP = fopen(hdrFileName, "w")) == NULL)
{
errNum = WLZ_ERR_WRITE_EOF;
}
#ifdef _WIN32
else if(_setmode(_fileno(fP), 0x8000) == -1)
{
errNum = WLZ_ERR_READ_EOF;
}
#endif
}
if(errNum == WLZ_ERR_NONE)
{
errNum = WlzEffWriteAnlHdrKey(fP, &dsr);
}
if(errNum == WLZ_ERR_NONE)
{
errNum = WlzEffWriteAnlHdrImageDim(fP, &dsr);
}
if(errNum == WLZ_ERR_NONE)
{
errNum = WlzEffWriteAnlHdrDataHistory(fP, &dsr);
}
if(fP)
{
(void )fclose(fP);
fP = NULL;
}
/* Open the ANALYZE .img file and write the image data. */
if(errNum == WLZ_ERR_NONE)
{
if((fP = fopen(imgFileName, "w")) == NULL)
{
errNum = WLZ_ERR_WRITE_EOF;
}
#ifdef _WIN32
else if(_setmode(_fileno(fP), 0x8000) == -1)
{
errNum = WLZ_ERR_READ_EOF;
}
#endif
}
if(errNum == WLZ_ERR_NONE)
{
switch(gType)
{
case WLZ_GREY_INT:
errNum = WlzEffWriteAnlInt(fP, cnt, dataP.inp);
break;
case WLZ_GREY_SHORT:
errNum = WlzEffWriteAnlShort(fP, cnt, dataP.shp);
break;
case WLZ_GREY_UBYTE:
errNum = WlzEffWriteAnlChar(fP, cnt, dataP.ubp);
break;
case WLZ_GREY_FLOAT:
errNum = WlzEffWriteAnlFloat(fP, cnt, dataP.flp);
break;
case WLZ_GREY_DOUBLE:
errNum = WlzEffWriteAnlDouble(fP, cnt, dataP.dbp);
break;
default:
break;
}
}
if(fP)
{
(void )fclose(fP);
}
if(data)
{
switch(obj->type)
{
case WLZ_2D_DOMAINOBJ:
Alc2Free((void **)data);
break;
case WLZ_3D_DOMAINOBJ:
Alc3Free((void ***)data);
break;
default:
break;
}
}
(void )AlcFree(fileName);
(void )AlcFree(hdrFileName);
(void )AlcFree(imgFileName);
return(errNum);
}