void BkgParamH5::IncrementalWriteRegions ( int flow, int iBlk )
{
// write to any live region parameters
// every parameter checks itself to see if writing is useful or safe
IncrementalWriteParam ( empty_trace.source,empty_trace.h5_set,flow );
IncrementalWriteParam ( empty_dc.source, empty_dc.h5_set, flow );
IncrementalWriteParam ( region_debug_bead_amplitude_krate.source, region_debug_bead_amplitude_krate.h5_set, flow );
IncrementalWriteParam ( region_debug_bead_predicted.source, region_debug_bead_predicted.h5_set, flow );
IncrementalWriteParam ( region_debug_bead_corrected.source, region_debug_bead_corrected.h5_set, flow );
IncrementalWriteParam ( region_debug_bead_xtalk.source, region_debug_bead_xtalk.h5_set, flow );
WriteOneBlock ( regional_params.source, regional_params.h5_set,iBlk );
WriteOneBlock ( nuc_shape_params.source, nuc_shape_params.h5_set,iBlk );
WriteOneBlock ( enzymatics_params.source, enzymatics_params.h5_set,iBlk );
WriteOneBlock ( buffering_params.source, buffering_params.h5_set,iBlk );
WriteOneBlock ( derived_params.source, derived_params.h5_set,iBlk );
emphasis_val.SafeWrite ( iBlk ); // do every compute block
if ( iBlk==0 ) // do only once at first compute block
{
region_debug_bead_location.SafeWrite();
region_debug_bead.SafeWrite();
dark_matter_trace.SafeWrite();
darkness_val.SafeWrite();
region_init_val.SafeWrite();
region_offset_val.SafeWrite();
time_compression.SafeWrite();
}
}
/*
* 4:1:1
*/
void
Write4Blocks (int *store1, int *store2, int *store3, int *store4,
int *p_out_vpos, int *p_out_hpos, unsigned char *p_out_buf,
dvars *d)
{
int voffs, hoffs;
/*
* OX
* XX
*/
voffs = *p_out_vpos * DCTSIZE;
hoffs = *p_out_hpos * DCTSIZE;
WriteOneBlock (store1, p_out_buf,
d->p_jinfo_image_width, d->p_jinfo_image_height, voffs, hoffs);
/*
* XO
* XX
*/
hoffs += DCTSIZE;
WriteOneBlock (store2, p_out_buf,
d->p_jinfo_image_width, d->p_jinfo_image_height, voffs, hoffs);
/*
* XX
* OX
*/
voffs += DCTSIZE;
hoffs -= DCTSIZE;
WriteOneBlock (store3, p_out_buf,
d->p_jinfo_image_width, d->p_jinfo_image_height, voffs, hoffs);
/*
* XX
* XO
*/
hoffs += DCTSIZE;
WriteOneBlock (store4,
p_out_buf, d->p_jinfo_image_width, d->p_jinfo_image_height,
voffs, hoffs);
/*
* Add positions
*/
*p_out_hpos = *p_out_hpos + 2;
*p_out_vpos = *p_out_vpos + 2;
if (*p_out_hpos < d->p_jinfo_MCUWidth)
{
*p_out_vpos = *p_out_vpos - 2;
}
else
{
*p_out_hpos = 0; /* If at end of image (width) */
}
}
/*
* WriteBlock() writes an array of data in the integer array pointed to
* by store out to the driver specified by the IOB. The integer array is
* stored in row-major form, that is, the first row of (8) elements, the
* second row of (8) elements....
* ONLY for MCU 1:1:1
*/
void
WriteBlock(int *store, int *p_out_vpos, int *p_out_hpos, unsigned char *p_out_buf)
{
int voffs,hoffs;
/*
* Get vertical offsets
*/
voffs = *p_out_vpos * DCTSIZE;
hoffs = *p_out_hpos * DCTSIZE;
/*
* Write block
*/
WriteOneBlock(store,
p_out_buf,
p_jinfo_image_width,
p_jinfo_image_height,
voffs,
hoffs);
/*
* Add positions
*/
*p_out_hpos++;
*p_out_vpos++;
if (*p_out_hpos < p_jinfo_MCUWidth){
*p_out_vpos--;
}else{
*p_out_hpos = 0; /* If at end of image (width) */
}
}
void BkgParamH5::IncrementalWriteBeads ( int flow, int iBlk )
{
// every parameter checks itself to see if writing is useful or safe
// every time we write, we write these
IncrementalWriteParam ( bead_dc.source,bead_dc.h5_set,flow );
IncrementalWriteParam ( Amplitude.source,Amplitude.h5_set,flow );
IncrementalWriteParam ( krate_multiplier.source,krate_multiplier.h5_set,flow );
IncrementalWriteParam ( residual_error.source,residual_error.h5_set,flow );
// do compute blocks
WriteOneBlock ( average_error_flow_block.source, average_error_flow_block.h5_set,iBlk );
WriteOneBlock ( bead_clonal_compute_block.source, bead_clonal_compute_block.h5_set,iBlk );
WriteOneBlock ( bead_corrupt_compute_block.source, bead_corrupt_compute_block.h5_set,iBlk );
if ( iBlk==0 ) // only do the first compute block
{
bead_base_parameter.SafeWrite();
}
}
