/*
* The application must provide a function that configures a peripheral to
* create the FreeRTOS tick interrupt, then define configSETUP_TICK_INTERRUPT()
* in FreeRTOSConfig.h to call the function. This file contains a function
* that is suitable for use on the Zynq SoC.
*/
void vConfigureTickInterrupt( void )
{
static XScuGic xInterruptController; /* Interrupt controller instance */
BaseType_t xStatus;
extern void FreeRTOS_Tick_Handler( void );
XScuTimer_Config *pxTimerConfig;
XScuGic_Config *pxGICConfig;
const uint8_t ucRisingEdge = 3;
/* This function is called with the IRQ interrupt disabled, and the IRQ
interrupt should be left disabled. It is enabled automatically when the
scheduler is started. */
/* Ensure XScuGic_CfgInitialize() has been called. In this demo it has
already been called from prvSetupHardware() in main(). */
pxGICConfig = XScuGic_LookupConfig( XPAR_SCUGIC_SINGLE_DEVICE_ID );
xStatus = XScuGic_CfgInitialize( &xInterruptController, pxGICConfig, pxGICConfig->CpuBaseAddress );
configASSERT( xStatus == XST_SUCCESS );
( void ) xStatus; /* Remove compiler warning if configASSERT() is not defined. */
/* The priority must be the lowest possible. */
XScuGic_SetPriorityTriggerType( &xInterruptController, XPAR_SCUTIMER_INTR, portLOWEST_USABLE_INTERRUPT_PRIORITY << portPRIORITY_SHIFT, ucRisingEdge );
/* Install the FreeRTOS tick handler. */
xStatus = XScuGic_Connect( &xInterruptController, XPAR_SCUTIMER_INTR, (Xil_ExceptionHandler) FreeRTOS_Tick_Handler, ( void * ) &xTimer );
configASSERT( xStatus == XST_SUCCESS );
( void ) xStatus; /* Remove compiler warning if configASSERT() is not defined. */
/* Initialise the timer. */
pxTimerConfig = XScuTimer_LookupConfig( XPAR_SCUTIMER_DEVICE_ID );
xStatus = XScuTimer_CfgInitialize( &xTimer, pxTimerConfig, pxTimerConfig->BaseAddr );
configASSERT( xStatus == XST_SUCCESS );
( void ) xStatus; /* Remove compiler warning if configASSERT() is not defined. */
/* Enable Auto reload mode. */
XScuTimer_EnableAutoReload( &xTimer );
/* Ensure there is no prescale. */
XScuTimer_SetPrescaler( &xTimer, 0 );
/* Load the timer counter register. */
XScuTimer_LoadTimer( &xTimer, XSCUTIMER_CLOCK_HZ / configTICK_RATE_HZ );
/* Start the timer counter and then wait for it to timeout a number of
times. */
XScuTimer_Start( &xTimer );
/* Enable the interrupt for the xTimer in the interrupt controller. */
XScuGic_Enable( &xInterruptController, XPAR_SCUTIMER_INTR );
/* Enable the interrupt in the xTimer itself. */
vClearTickInterrupt();
XScuTimer_EnableInterrupt( &xTimer );
}
int WaitForStart::ScuTimerWait(u16 DeviceId, u32 timeOut) {
int Status;
XScuTimer_Config *ConfigPtr;
XScuTimer *TimerInstancePtr = &Timer;
/*
* Initialize the Scu Private Timer so that it is ready to use.
*/
ConfigPtr = XScuTimer_LookupConfig(DeviceId);
/*
* This is where the virtual address would be used, this example
* uses physical address.
*/
Status = XScuTimer_CfgInitialize(TimerInstancePtr, ConfigPtr,
ConfigPtr->BaseAddr);
if (Status != XST_SUCCESS) {
return XST_FAILURE;
}
// XScuTimer_SetPrescaler(TimerInstancePtr,16);
XScuTimer_SetPrescaler(TimerInstancePtr, 1);
/*
* Load the timer decrement register.
*/
XScuTimer_LoadTimer(TimerInstancePtr, timeOut);
/*
* Start the Scu Private Timer device.
*/
XScuTimer_Start(TimerInstancePtr);
while (XScuTimer_GetCounterValue(TimerInstancePtr) != 0) {
// Wait for timer to expire
}
// Stop timer after use
XScuTimer_Stop(TimerInstancePtr);
return XST_SUCCESS;
}
int main(void) {
xil_printf("Starting\r\n");
int Status;
int i;
u32 start_time;
u32 end_time;
u32 return_val[ACTUAL_READS];
// Initialize DMA
Status = DMA_init(DMA_DEV_ID);
if (Status != XST_SUCCESS) {
xil_printf("XAxiDma_init: Failed %d\r\n", Status);
return XST_FAILURE;
}
// Initialize PE
Status = XNeedlemanwunsch_Initialize(&PE, PE_DEV_ID);
if (Status != XST_SUCCESS) {
xil_printf("XNeedlemanwunsch_Initialize: Failed %d\r\n", Status);
return XST_FAILURE;
}
XNeedlemanwunsch_DisableAutoRestart(&PE);
// Initialize timer with maximum value so we can see how far down it
// goes. It should last about 12 seconds before hitting zero.
Timer_init(TIMER_DEV_ID);
XScuTimer_LoadTimer(&Timer, TIMER_MAX);
XScuTimer_SetPrescaler(&Timer, TIMER_PRESCALE-1);
start_time = TIMER_MAX;
// Flush caches
Xil_DCacheFlushRange((INTPTR)&ref_genome, sizeof(ref_genome));
XScuTimer_Start(&Timer);
for (i=0; i<ACTUAL_READS; i++) {
DMA_send();
writeRead(0, i);
while(!XNeedlemanwunsch_IsIdle(&PE) && !XNeedlemanwunsch_IsReady(&PE)) {
xil_printf("Waiting for idle/ready\r\n");
}
XNeedlemanwunsch_Start(&PE);
//if (XNeedlemanwunsch_IsIdle(&PE) || XNeedlemanwunsch_IsReady(&PE)) {
//xil_printf("Is still idle/ready\r\n");
//}
while(!XNeedlemanwunsch_IsDone(&PE) /*&& !XNeedlemanwunsch_IsIdle(&PE) && !XNeedlemanwunsch_IsReady(&PE)*/) {
}
return_val[i] = XNeedlemanwunsch_Get_return(&PE);
}
XScuTimer_Stop(&Timer);
end_time = XScuTimer_GetCounterValue(&Timer);
xil_printf("Done\r\n");
for (i=0; i<ACTUAL_READS; i++) {
xil_printf("read %d best fit at %d\r\n", i, return_val[i]);
}
print_time(start_time, end_time);
return 0;
}
