static void computeOffset(cv::Mat img1, cv::Mat img2, int d, cv::Point& _off)
{
cv::Point offset;
cv::Size size1 = img1.size(), size2 = img2.size();
if ((size1.width > 2 && size1.height > 2) &&
(size2.width > 2 && size2.height > 2) &&
(d < 16)) {
cv::Mat tmp1, tmp2;
cv::resize(img1, tmp1, cv::Size(), 0.5f, 0.5f);
cv::resize(img2, tmp2, cv::Size(), 0.5f, 0.5f);
computeOffset(tmp1, tmp2, d+1, offset);
offset.x *= 2, offset.y *= 2;
} else {
offset.x = 0, offset.y = 0;
}
cv::Point result;
cv::Mat tb1, tb2, eb1, eb2;
computeBitmaps(img1, tb1, eb1);
computeBitmaps(img2, tb2, eb2);
cv::Rect bound1(cv::Point(0,0), size1);
cv::Rect bound2(cv::Point(0,0), size2);
int min_err = (bound1 & bound2).area();
for (int dx = -1; dx <= 1; ++dx) {
for (int dy = -1; dy <= 1; ++dy) {
cv::Point displace = offset + cv::Point(dx,dy);
cv::Rect frame = bound1 & (bound2 + displace);
cv::Rect shift = bound2 & (bound1 - displace);
// ROIs
cv::Mat framed_tb1(tb1, frame);
cv::Mat framed_eb1(eb1, frame);
cv::Mat shifted_tb2(tb2, shift);
cv::Mat shifted_eb2(eb2, shift);
//
cv::Mat tmp1, tmp2;
cv::bitwise_xor(framed_tb1, shifted_tb2, tmp1);
cv::bitwise_and(tmp1, framed_eb1, tmp2);
cv::bitwise_and(shifted_eb2, tmp2, tmp1);
//
int err = (int)cv::sum(tmp1)[0];
if (dx == 0 && dy == 0)
err -= 1;
if (err < min_err) {
result = displace;
min_err = err;
}
}
}
_off = result;
}
typename TreeType::ElemType MinimalCoverageSweep<SplitPolicy>::
SweepLeafNode(const size_t axis,
const TreeType* node,
typename TreeType::ElemType& axisCut)
{
typedef typename TreeType::ElemType ElemType;
typedef bound::HRectBound<metric::EuclideanDistance, ElemType> BoundType;
std::vector<std::pair<ElemType, size_t>> sorted(node->Count());
sorted.resize(node->Count());
for (size_t i = 0; i < node->NumPoints(); i++)
{
sorted[i].first = node->Dataset().col(node->Point(i))[axis];
sorted[i].second = i;
}
// Sort high bounds of children.
std::sort(sorted.begin(), sorted.end(),
[] (const std::pair<ElemType, size_t>& s1,
const std::pair<ElemType, size_t>& s2)
{
return s1.first < s2.first;
});
size_t splitPointer = node->Count() / 2;
axisCut = sorted[splitPointer - 1].first;
// Check if the partition is suitable.
if (!CheckLeafSweep(node, axis, axisCut))
return std::numeric_limits<ElemType>::max();
BoundType bound1(node->Bound().Dim());
BoundType bound2(node->Bound().Dim());
// Find bounds of two resulting nodes.
for (size_t i = 0; i < splitPointer; i++)
bound1 |= node->Dataset().col(node->Point(sorted[i].second));
for (size_t i = splitPointer; i < node->NumChildren(); i++)
bound2 |= node->Dataset().col(node->Point(sorted[i].second));
// Evaluate the cost of the split i.e. calculate the total coverage
// of two resulting nodes.
return bound1.Volume() + bound2.Volume();
}
Interval MeanValueForm::operator ()(const MeanValueForm::ipolynomial_type *poly_ptr,
const MeanValueForm::additional_var_data *data_ptr ) const
{
Interval bound1(0.0), bound2(0.0);
std::vector<Interval> bound_of_derivatives( data_ptr->size(), Interval(0.0) );
std::vector<Interval> arguments( data_ptr->size() ), arguments_mid( data_ptr->size() );
for(unsigned int i = 0; i < data_ptr->size(); i++)
if( (*data_ptr)[ i ].operator ->() != 0 )
{
arguments [ i ] = ((*data_ptr)[ i ])->domain_ - ((*data_ptr)[ i ])->devel_point_;
arguments_mid[ i ] = Interval( arguments[ i ].mid() );
}
MeanValueForm::const_ipolynomial_iterator
curr = poly_ptr->begin(),
last = poly_ptr->end();
while( curr != last ) //Walk trough the polynomial.
{
Interval prod1(1.0), prod2(1.0);
//Evaluate the current monomial at the midpoint of the domain.
for(unsigned int i = (*curr).key().min_var_code(); i <= (*curr).key().max_var_code(); i++)
{
unsigned int e = (*curr).key().expnt_of_var(i);
if( e != 0 )
{
prod1 *= power( arguments [i-1], e );
prod2 *= power( arguments_mid[i-1], e );
}
}
//Multiply with coefficient.
prod1 *= (*curr).value(); // <---- Multiply with double value.
prod2 *= (*curr).value(); // <---- Multiply with double value.
//Add enclosure to bound interval.
bound1 += prod1;
bound2 += prod2;
//Derivate the current monomial and evaluate it.
for(unsigned int i = (*curr).key().min_var_code(); i <= (*curr).key().max_var_code(); i++)
{
unsigned int e_i = (*curr).key().expnt_of_var(i);
if( e_i != 0 )
{
prod2 = e_i * power( arguments[i-1], e_i-1 ); //Value of derivative.
unsigned int j;
for(j = (*curr).key().min_var_code(); j < i; j++)
{
unsigned int e_j = (*curr).key().expnt_of_var(j);
if( e_j != 0 )
{
prod2 *= power( arguments[j-1], e_j );
}
}
for(j = i+1; j <= (*curr).key().max_var_code(); j++)
{
unsigned int e_j = (*curr).key().expnt_of_var(j);
if( e_j != 0 )
{
prod2 *= power( arguments[j-1], e_j );
}
}
//Multiply with coefficient.
prod2 *= (*curr).value(); // <---- Multiply with double value.
//Save enclosure of derivative.
bound_of_derivatives[ i - 1 ] += prod2;
}
}
++curr;
}
for(unsigned int i = 0; i < bound_of_derivatives.size(); i++)
if( bound_of_derivatives[i] != Interval(0.0) )
bound2 += bound_of_derivatives[i] * (((*data_ptr)[i])->domain_ - (((*data_ptr)[i])->domain_).mid() );
return bound1 & bound2; //Intersection of naive and mean value form evaluation.
}
int main (int argc, char* argv[])
{
int n1,n2,n3; /*n1 is trace length, n2 is the number of traces, n3 is the number of 3th axis*/
int nfw; /*nfw is the filter-window length*/
int m;
int i,j,k,ii;
bool boundary;
float *trace;
float *tempt;
float *temp1;
float *extendt;
sf_file in, out;
sf_init (argc, argv);
in = sf_input("in");
out = sf_output("out");
if (!sf_histint(in,"n1",&n1)) sf_error("No n1= in input");
if (!sf_histint(in,"n2",&n2)) sf_error("No n2= in input");
n3 = sf_leftsize(in,2);
/* get the trace length (n1) and the number of traces (n2) and n3*/
if (!sf_getint("nfw",&nfw)) sf_error("Need integer input");
/* filter-window length (positive integer)*/
if (!sf_getbool("boundary",&boundary)) boundary=false;
/* if y, boundary is data, whereas zero*/
if (nfw < 1) sf_error("Need positive integer input");
if (nfw%2 == 0) nfw = (nfw+1);
m=(nfw-1)/2;
trace = sf_floatalloc(n1*n2);
tempt = sf_floatalloc(n1*n2);
temp1 = sf_floatalloc(nfw);
extendt = sf_floatalloc((n1+2*m)*n2);
for(ii=0;ii<n3;ii++){
sf_floatread(trace,n1*n2,in);
for(i=0;i<n1*n2;i++){
tempt[i]=trace[i];
}
bound1(tempt,extendt,nfw,n1,n2,boundary);
/************1-D mean filter****************/
for(i=0;i<n2;i++){
for(j=0;j<n1;j++){
for(k=0;k<nfw;k++){
temp1[k]=extendt[(n1+2*m)*i+j+k];
}
trace[n1*i+j]=mean(temp1,nfw);
}
}
sf_floatwrite(trace,n1*n2,out);
}
exit (0);
}
int main (int argc, char* argv[])
{
int n1,n2,n3; /*n1 is trace length, n2 is the number of traces, n3 is the number of 3th axis*/
int i,j,k,kk,ii;
int nfw; /*nfw is the reference filter-window length*/
int tempnfw; /*temporary variable*/
int m;
float medianv; /*temporary median variable*/
bool boundary;
int alpha,beta,gamma,delta; /*time-varying window coefficients*/
float *trace;
float *tempt; /*temporary array*/
float *result; /*output array*/
float *extendt;
float *medianarray; /*1D median filtered array*/
float *temp1,*temp2,*temp3; /*temporary array*/
sf_file in, out;
sf_init (argc, argv);
in = sf_input("in");
out = sf_output("out");
if (!sf_histint(in,"n1",&n1)) sf_error("No n1= in input");
if (!sf_histint(in,"n2",&n2)) sf_error("No n2= in input");
n3 = sf_leftsize(in,2);
/* get the trace length (n1) and the number of traces (n2) and n3*/
if (!sf_getbool("boundary",&boundary)) boundary=false;
/* if y, boundary is data, whereas zero*/
if (!sf_getint("nfw",&nfw)) sf_error("Need integer input");
/* reference filter-window length (>delta, positive and odd integer)*/
if (!sf_getint("alpha",&alpha)) alpha=2;
/* time-varying window parameter "alpha" (default=2)*/
if (!sf_getint("beta",&beta)) beta=0;
/* time-varying window parameter "beta" (default=0)*/
if (!sf_getint("gamma",&gamma)) gamma=2;
/* time-varying window parameter "gamma" (default=2)*/
if (!sf_getint("delta",&delta)) delta=4;
/* time-varying window parameter "delta" (default=4)*/
if (alpha<beta || delta<gamma) sf_error("Need alpha>=beta && delta>=gamma");
if ((alpha%2)!=0) alpha = alpha+1;
if ((beta%2)!=0) beta = beta+1;
if ((gamma%2)!=0) gamma = gamma+1;
if ((delta%2)!=0) delta = delta+1;
if (nfw <=delta) sf_error("Need nfw > delta");
if (nfw%2 == 0) nfw++;
m=(nfw-1)/2;
tempnfw=nfw;
trace = sf_floatalloc(n1*n2);
tempt = sf_floatalloc(n1*n2);
result = sf_floatalloc(n1*n2);
extendt = sf_floatalloc((n1+2*m)*n2);
medianarray =sf_floatalloc(n1*n2);
temp1 = sf_floatalloc(nfw);
temp2 = sf_floatalloc(n1);
/*set the data space*/
for(ii=0;ii<n3;ii++){
sf_floatread(trace,n1*n2,in);
for(i=0;i<n1*n2;i++){
tempt[i]=trace[i];
}
bound1(tempt,extendt,nfw,n1,n2,boundary);
/************1D reference median filtering****************/
for(i=0;i<n2;i++){
for(j=0;j<n1;j++){
for(k=0;k<nfw;k++){
temp1[k]=extendt[(n1+2*m)*i+j+k];
}
medianarray[n1*i+j]=sf_quantile(m,nfw,temp1);
}
}
medianv=0.0;
for(i=0;i<n1*n2;i++){
medianv=medianv+fabs(medianarray[i]);
}
medianv=medianv/(1.0*n1*n2);
/************1D time-varying median filter****************/
for(i=0;i<n2;i++){
for(kk=0;kk<n1;kk++){
temp2[kk]=trace[n1*i+kk];
}
for(j=0;j<n1;j++){
if(fabs(medianarray[n1*i+j])<medianv){
if(fabs(medianarray[n1*i+j])<medianv/2.0){
tempnfw=nfw+alpha;
}
else{
tempnfw=nfw+beta;
}
}
else{
if(fabs(medianarray[n1*i+j])>=(medianv*2.0)){
tempnfw=nfw-delta;
}
else{
tempnfw=nfw-gamma;
}
}
temp3 = sf_floatalloc(tempnfw);
bound2(temp2,temp3,n1,tempnfw,j,boundary);
result[n1*i+j]=sf_quantile((tempnfw-1)/2,tempnfw,temp3);
tempnfw=nfw;
}
}
sf_floatwrite(result,n1*n2,out);
}
exit (0);
}
typename TreeType::ElemType MinimalCoverageSweep<SplitPolicy>::
SweepNonLeafNode(const size_t axis,
const TreeType* node,
typename TreeType::ElemType& axisCut)
{
typedef typename TreeType::ElemType ElemType;
typedef bound::HRectBound<metric::EuclideanDistance, ElemType> BoundType;
std::vector<std::pair<ElemType, size_t>> sorted(node->NumChildren());
for (size_t i = 0; i < node->NumChildren(); i++)
{
sorted[i].first = SplitPolicy::Bound(node->Child(i))[axis].Hi();
sorted[i].second = i;
}
// Sort high bounds of children.
std::sort(sorted.begin(), sorted.end(),
[] (const std::pair<ElemType, size_t>& s1,
const std::pair<ElemType, size_t>& s2)
{
return s1.first < s2.first;
});
size_t splitPointer = node->NumChildren() / 2;
axisCut = sorted[splitPointer - 1].first;
// Check if the midpoint split is suitable.
if (!CheckNonLeafSweep(node, axis, axisCut))
{
// Find any suitable partition if the default partition is not acceptable.
for (splitPointer = 1; splitPointer < sorted.size(); splitPointer++)
{
axisCut = sorted[splitPointer - 1].first;
if (CheckNonLeafSweep(node, axis, axisCut))
break;
}
if (splitPointer == node->NumChildren())
return std::numeric_limits<ElemType>::max();
}
BoundType bound1(node->Bound().Dim());
BoundType bound2(node->Bound().Dim());
// Find bounds of two resulting nodes.
for (size_t i = 0; i < splitPointer; i++)
bound1 |= node->Child(sorted[i].second).Bound();
for (size_t i = splitPointer; i < node->NumChildren(); i++)
bound2 |= node->Child(sorted[i].second).Bound();
// Evaluate the cost of the split i.e. calculate the total coverage
// of two resulting nodes.
ElemType area1 = bound1.Volume();
ElemType area2 = bound2.Volume();
return area1 + area2;
}