int main(int argc, char **argv)
{
char test1[] = " Hallo \n";
printf("Before: '%s'\n", test1);
char *after = prepare(test1);
printf("After: '%s'\n", after ? after : "<NULL>");
char test2[] = " \t\t \n";
printf("Before: '%s'\n", test2);
after = prepare(test2);
printf("After: '%s'\n", after ? after : "<NULL>");
struct cmd cmd = {0, 0};
char line[] = "echo \"test bla\" 'blub\\' diedup'";
split_cmd(line, &cmd);
printf("Cmd: \n Argc: %d\n", cmd.argc);
int i=0;
for (; i < cmd.argc; ++i) {
printf(" ->%s\n", cmd.argv[i]);
}
char *relined = build_cmd(&cmd);
printf("Reassembled: '%s'\n", relined);
free_argv(&cmd);
free(relined);
return 0;
}
int
main(int argc, char *argv[])
{
char *cmd_f = NULL;
subcmd_f icmd = NULL;
const char *cmd;
int res = 0;
init_cmds();
if ((cmd = extract_cmd(argc, argv)) == NULL &&
/* try the rewriter */
(icmd = rewrite_subcmd(argc, argv)) == NULL) {
ute_cmd_help(argc, argv);
res = 1;
} else if (cmd != NULL && (cmd_f = build_cmd(cmd)) != NULL) {
/* prepare the execve */
argv[0] = cmd_f;
res = execv(cmd_f, argv);
} else if (icmd != NULL || (icmd = get_subcmd(cmd)) != NULL) {
/* call the internal command */
res = icmd(argc, argv);
} else {
fprintf(stderr, "ute subcommand `%s' invalid\n\n", cmd);
ute_cmd_help(argc, argv);
res = 1;
}
return res;
}
/******************************************************************************
* This function scores a sequence database using mhmmscan
*****************************************************************************/
void run_mhmmscan(
MCAST_OPTIONS_T *options,
char *hmm_filename,
char *seq_filename,
char *scores_filename
) {
if (verbosity >= NORMAL_VERBOSE) {
fprintf(stderr, "%s", "Creating HMM from motif file.\n");
}
// Build the command line for mhmmscan
const char *bin_dir = get_meme_bin_dir();
char *cmd;
cmd = build_cmd(
"mhmmscan",
"%s/mhmmscan %s %s %s --fancy --allow-weak-motifs %s --p-thresh %s "
"--max-gap %s --e-thresh %s --eg-cost 1 --pseudo-weight %s %s "
"%s %s > %s",
bin_dir,
options->bg_filename != NULL ? "--bg-file" : "",
options->bg_filename != NULL ? options->bg_filename : "",
options->text_only ? "--text" : "",
options->use_synth ? "--synth" : "",
options->p_thresh,
options->max_gap,
options->e_thresh,
options->pseudo_weight,
options->quiet ? "--quiet" : "",
hmm_filename,
seq_filename,
scores_filename
);
// Execute mhmmscan
if (verbosity >= NORMAL_VERBOSE) {
fprintf(stderr, "Executing %s\n", cmd);
}
int status = system(cmd);
// Check for interrupts
if (WIFSIGNALED(status) &&
(WTERMSIG(status) == SIGINT || WTERMSIG(status) == SIGQUIT)) {
die("Interrupted while running mhmmscan");
}
if (status == -1) {
// Unable to start mhmmscan
perror("Error starting mhmmscan command");
die("Unable to start mhmmscan command (%s)", cmd);
}
// Check result of running mhmmscan
int result = WEXITSTATUS(status);
if (result != 0) {
die("mhmmscan failed with exit status %d, command run was: %s", result, cmd);
}
free(cmd);
}
int upscli_list_start(UPSCONN_t *ups, unsigned int numq, const char **query)
{
char cmd[UPSCLI_NETBUF_LEN], tmp[UPSCLI_NETBUF_LEN];
if (!ups) {
return -1;
}
if (numq < 1) {
ups->upserror = UPSCLI_ERR_INVALIDARG;
return -1;
}
/* create the string to send to upsd */
build_cmd(cmd, sizeof(cmd), "LIST", numq, query);
if (upscli_sendline(ups, cmd, strlen(cmd)) != 0) {
return -1;
}
if (upscli_readline(ups, tmp, sizeof(tmp)) != 0) {
return -1;
}
if (upscli_errcheck(ups, tmp) != 0) {
return -1;
}
if (!pconf_line(&ups->pc_ctx, tmp)) {
ups->upserror = UPSCLI_ERR_PARSE;
return -1;
}
if (ups->pc_ctx.numargs < 2) {
ups->upserror = UPSCLI_ERR_PROTOCOL;
return -1;
}
/* the response must start with BEGIN LIST */
if ((strcasecmp(ups->pc_ctx.arglist[0], "BEGIN") != 0) ||
(strcasecmp(ups->pc_ctx.arglist[1], "LIST") != 0)) {
ups->upserror = UPSCLI_ERR_PROTOCOL;
return -1;
}
/* q: [LIST] VAR <ups> *
* a: [BEGIN LIST] VAR <ups> */
/* compare q[0]... to a[2]... */
if (!verify_resp(numq, query, &ups->pc_ctx.arglist[2])) {
ups->upserror = UPSCLI_ERR_PROTOCOL;
return -1;
}
return 0;
}
int upscli_get(UPSCONN_t *ups, unsigned int numq, const char **query,
unsigned int *numa, char ***answer)
{
char cmd[UPSCLI_NETBUF_LEN], tmp[UPSCLI_NETBUF_LEN];
if (!ups) {
return -1;
}
if (numq < 1) {
ups->upserror = UPSCLI_ERR_INVALIDARG;
return -1;
}
/* create the string to send to upsd */
build_cmd(cmd, sizeof(cmd), "GET", numq, query);
if (upscli_sendline(ups, cmd, strlen(cmd)) != 0) {
return -1;
}
if (upscli_readline(ups, tmp, sizeof(tmp)) != 0) {
return -1;
}
if (upscli_errcheck(ups, tmp) != 0) {
return -1;
}
if (!pconf_line(&ups->pc_ctx, tmp)) {
ups->upserror = UPSCLI_ERR_PARSE;
return -1;
}
/* q: [GET] VAR <ups> <var> *
* a: VAR <ups> <var> <val> */
if (ups->pc_ctx.numargs < numq) {
ups->upserror = UPSCLI_ERR_PROTOCOL;
return -1;
}
if (!verify_resp(numq, query, ups->pc_ctx.arglist)) {
ups->upserror = UPSCLI_ERR_PROTOCOL;
return -1;
}
*numa = ups->pc_ctx.numargs;
*answer = ups->pc_ctx.arglist;
return 0;
}
/******************************************************************************
* This function builds a star topology HMM from a MEME format motif file.
* The HMM is stored in a text file in the output directory.
*****************************************************************************/
void run_mhmm(
char *motif_filename,
char *hmm_filename
) {
if (verbosity >= NORMAL_VERBOSE) {
fprintf(stderr, "%s", "Creating HMM from motif file.\n");
}
// Build the command line for mhmm
const char *bin_dir = get_meme_bin_dir();
char *cmd;
cmd = build_cmd(
"mhmm",
"%s/mhmm --type star --keep-unused --verbosity %d %s > %s",
bin_dir,
verbosity,
motif_filename,
hmm_filename
);
// Execute mhmm
if (verbosity >= NORMAL_VERBOSE) {
fprintf(stderr, "Executing %s\n", cmd);
}
int status = system(cmd);
// Check for interrupts
if (WIFSIGNALED(status) &&
(WTERMSIG(status) == SIGINT || WTERMSIG(status) == SIGQUIT)) {
die("Interrupted while running mhmm");
}
if (status == -1) {
// Unable to start mhmm
perror("Error starting mhmm command");
die("Unable to start mhmm command (%s)", cmd);
}
// Check result of running mhmm
int result = WEXITSTATUS(status);
if (result != 0) {
die("mhmm failed with exit status %d, command run was: %s", result, cmd);
}
free(cmd);
}
int
main(int argc, char **argv)
{
u_int i;
char **cmd_argv;
int ret, cmd_argc;
if (pledge("stdio rpath wpath cpath fattr flock getpw", NULL) == -1)
err(2, "pledge");
ret = -1;
rcs_optind = 1;
SLIST_INIT(&temp_files);
cmd_argc = build_cmd(&cmd_argv, argv, argc);
if ((rcs_tmpdir = getenv("TMPDIR")) == NULL)
rcs_tmpdir = RCS_TMPDIR_DEFAULT;
signal(SIGHUP, sighdlr);
signal(SIGINT, sighdlr);
signal(SIGQUIT, sighdlr);
signal(SIGABRT, sighdlr);
signal(SIGALRM, sighdlr);
signal(SIGTERM, sighdlr);
for (i = 0; i < (sizeof(programs)/sizeof(programs[0])); i++)
if (strcmp(__progname, programs[i].prog_name) == 0) {
usage = programs[i].prog_usage;
ret = programs[i].prog_hdlr(cmd_argc, cmd_argv);
break;
}
/* clean up temporary files */
worklist_run(&temp_files, worklist_unlink);
exit(ret);
}
void Terminal (void)
{
U8 c;
if (GetRxByte(&c) == FIFO_ERROR_UNDERFLOW)
return;
// While a usable user command on RS232 isn't received, build it
if (!cmd)
{
build_cmd(c);
}
// perform the command
if (cmd)
{
switch (cmd_type)
{
case CMD_UART:
DrawUartReg(par_str1[0]-0x30);
break;
case CMD_RESET:
RESET;
break;
case CMD_DMA:
DrawDMAStatus();
break;
case CMD_CAN0:
DrawCanStatus(0);
break;
case CMD_CAN1:
DrawCanStatus(1);
break;
case CMD_CAN2:
DrawCanStatus(2);
break;
#ifdef EN_SR_ZN_CYKL
case CMD_CYKLE:
puts((BYTE *)" Среднее время цикла - ");
putdec(program.SrCikl_mks);
puts((BYTE *)" мкс \n\r");
break;
#endif
case CMD_ADDR:
puts((BYTE *)" Адрес блока - ");
putdec(ADDR,3);
puts((BYTE *)"\n\r");
break;
case CMD_TIMERS:
PrintTimerService();
break;
//=============================================
case CMD_HELP:
// Display help on USART
puts((BYTE *)MSG_HELP);
break;
// Unknown command.
default:
// Display error message.
puts((BYTE *)MSG_ER_CMD_NOT_FOUND);
break;
}
// Reset vars.
cmd_type = CMD_NONE;
cmd = false;
// Display prompt.
puts((BYTE *)MSG_PROMPT);
}
}
