void BD_partial_lik_by_rate(
const std::vector<double> &ts,
const std::vector<double> &te,
const std::vector<double> &vTx,
const std::vector<double> &rates,
const std::string &par,
std::vector<double> &results){
int nSpecies = ts.size();
for(size_t iR=0; iR<rates.size(); ++iR){
double start = vTx[iR];
double end = vTx[iR+1];
unsigned int nEvent;
if(par == "l"){
nEvent = countEvent(nSpecies, start, end, ts);
} else {
nEvent = countEvent(nSpecies, start, end, te);
}
double totalBL = 0; // Total branch length
for(size_t iS=0; iS<(size_t)nSpecies; ++iS) {
totalBL += getTimeInsideTF(ts[iS], te[iS], start, end);
}
results.push_back(nEvent*log(rates[iR]) + -rates[iR]*totalBL);
}
}
void determineFossilsOccurencePerEpoch(std::vector< double > &aEpochs, std::vector< std::vector <double> > &aFossils) {
assert(!aFossils.empty());
assert(!aEpochs.empty());
for(size_t iS=0; iS<aFossils.size(); ++iS) { // For each specie
std::vector<size_t> fossilCount(aEpochs.size());
for(size_t iE=0; iE<aEpochs.size()-1; ++iE) {
double start = aEpochs[iE];
double end = aEpochs[iE+1];
fossilCount[iE] = countEvent(aFossils[iS].size(), start, end, aFossils[iS]);
}
fossilCountPerEpoch.push_back(fossilCount);
}
}
int algo()
{
int i, j;
int RWmP[MAX_TASK_NUM];
fscanf(fin, "%d%d%d%d", &true_task_num, &task_num, &processor_num, &lcm_period);
period=(int *)malloc(sizeof(int)*task_num);
execute=(int *)malloc(sizeof(int)*task_num);
w=(float *)malloc(sizeof(float)*task_num);
for(i=0; i<task_num; i++)
fscanf(fin, "%d", &period[i]);
for(i=0; i<task_num; i++)
fscanf(fin, "%d", &execute[i]);
for(i=0; i<task_num; i++)
{
w[i]=((float)execute[i])/((float)period[i]);
RWmP[i]=0;
}
calc_bound();
initialize();
calc_alpha();
calc_UF();
for(i=0; i<processor_num; i++)
for(j=0; j<lcm_period; j++)
alloc[i][j]=-1;
for(i=0; i<row_num; i++)
Bfair(RWmP, i);
/* for(i=0; i<processor_num; i++)
{
for(j=0; j<lcm_period; j++)
{
fprintf(fout, "%d ", alloc[i][j]);
}
fprintf(fout, "\n");
}*/
if(checkSchedule()==-1)
{
printf("!!!Schedule error.\n");
}
else
printf("successfully scheduling.\n");
countPreemption();
countMigration();
countEvent();
fprintf(flog, "preemption:\n");
for(i=0; i<true_task_num; i++)
{
double ppj=((double)preemption[i])/((double)(lcm_period/period[i]));
fprintf(flog, "%lf ", ppj);
}
fprintf(flog, "\n");
fprintf(flog, "migration:\n");
for(i=0; i<true_task_num; i++)
{
double mpj=((double)migration[i])/((double)(lcm_period/period[i]));
fprintf(flog, "%lf ", mpj);
}
fprintf(flog, "\n");
fprintf(flog, "event:\n");
for(i=0; i<true_task_num; i++)
{
double epj=((double)event[i])/((double)(lcm_period/period[i]));
fprintf(flog, "%lf ", epj);
}
fprintf(flog, "\n");
remains();
return 0;
}
int main(int argc, char* argv[])
{
int i, j, k;
if(argc<3)
{
printf("usage: ./algo <taskset_filename> <logfile_name>\n");
return 0;
}
fin=fopen(argv[1], "r");
// fout=fopen(argv[2], "w");
flog=fopen(argv[2], "w");
fscanf(fin, "%d%d%d%d", &true_task_num, &task_num, &processor_num, &lcm_period);
for(j=0; j<task_num; j++)
fscanf(fin, "%d", &period[j]);
for(j=0; j<task_num; j++)
fscanf(fin, "%d", &execute[j]);
for(j=0; j<task_num; j++)
for(k=0; k<lcm_period; k++)
execute_flag[j][k]=-1;
for(j=0; j<processor_num; j++)
for(k=0; k<lcm_period; k++)
alloc[j][k]=-1;
preemption=(int*)malloc(sizeof(int)*true_task_num);
migration=(int*)malloc(sizeof(int)*true_task_num);
event=(int*)malloc(sizeof(int)*true_task_num);
if (lcm_period != schedule_task_set(1, 1)) {
printf("%s: Error!!!\n", argv[1]);
}
printf("%s: Successfull Scheduling\n", argv[1]);
allocate();
/* for(j=0; j<processor_num; j++)
{
for(k=0; k<lcm_period; k++)
{
fprintf(fout, "%d ", alloc[j][k]);
}
fprintf(fout, "\n");
}*/
countPreemption();
countMigration();
countEvent();
fprintf(flog, "preemption:\n");
for(i=0; i<true_task_num; i++)
{
double ppj=((double)preemption[i])/((double)(lcm_period/period[i]));
fprintf(flog, "%lf ", ppj);
}
fprintf(flog, "\n");
fprintf(flog, "migration:\n");
for(i=0; i<true_task_num; i++)
{
double mpj=((double)migration[i])/((double)(lcm_period/period[i]));
fprintf(flog, "%lf ", mpj);
}
fprintf(flog, "\n");
fprintf(flog, "event:\n");
for(i=0; i<true_task_num; i++)
{
double epj=((double)event[i])/((double)(lcm_period/period[i]));
fprintf(flog, "%lf ", epj);
}
fprintf(flog, "\n");
free(preemption);
free(migration);
free(event);
// fflush(fout);
fflush(flog);
fclose(flog);
// fclose(fout);
fclose(fin);
return 0;
}