Ejemplo n.º 1
0
   {str,lstr,    0,     0,     0,IF_NULL,                    -1,unimplemented}

/* this MUST correspond to the enum in include/types/idef.h */
const t_interaction_function interaction_function[F_NRE]=
{
  def_bond    ("BONDS",    "Bond",            2, 2, 2,  eNR_BONDS,  bonds         ),
  def_bond    ("G96BONDS", "G96Bond",         2, 2, 2,  eNR_BONDS,  g96bonds      ),
  def_bond    ("MORSE",    "Morse",           2, 3, 0,  eNR_MORSE,  morse_bonds   ),
  def_bond    ("CUBICBONDS","Cubic Bonds",    2, 3, 0,  eNR_CUBICBONDS, cubic_bonds),
  def_bondnb  ("CONNBONDS","Connect Bonds",   2, 0, 0,  0,      unimplemented     ),
  def_bonded  ("HARMONIC", "Harmonic Pot.",   2, 2, 2,  eNR_BONDS,  bonds         ),
  def_bondnb  ("FENEBONDS", "FENE Bonds",     2, 2, 0,  eNR_FENEBONDS, FENE_bonds ),
  def_bondt   ("TABBONDS", "Tab. Bonds",      2, 2, 2,  eNR_TABBONDS, tab_bonds   ),
  def_bondedtz("TABBONDSNC", "Tab. Bonds NC", 2, 2, 2,  eNR_TABBONDS, tab_bonds   ),
  def_bonded  ("RESTRAINTPOT", "Restraint Pot.", 2, 4, 4,  eNR_RESTRBONDS,  restraint_bonds ),
  def_angle   ("ANGLES",   "Angle",           3, 2, 2,  eNR_ANGLES, angles        ),
  def_angle   ("G96ANGLES","G96Angle",        3, 2, 2,  eNR_ANGLES, g96angles     ),
  def_bonded  ("CROSS_BOND_BOND", "Bond-Cross", 3, 3, 0,0,          cross_bond_bond ),
  def_bonded  ("CROSS_BOND_ANGLE","BA-Cross",   3, 4, 0,0,          cross_bond_angle ),
  def_angle   ("UREY_BRADLEY","U-B",          3, 4, 0,  0,          urey_bradley ),
  def_angle   ("QANGLES","Quartic Angles",    3, 6, 0,  eNR_QANGLES, quartic_angles ),
  def_bondedt ("TABANGLES", "Tab. Angles",    3, 2, 2,  eNR_TABANGLES, tab_angles ),
  def_bonded  ("PDIHS",    "Proper Dih.",     4, 3, 3,  eNR_PROPER, pdihs         ),
  def_bonded  ("RBDIHS",   "Ryckaert-Bell.",  4, 6, 6,  eNR_RB, rbdihs            ),
  def_bonded  ("FOURDIHS", "Fourier Dih.",    4, 4, 4,  eNR_FOURDIH, rbdihs       ),
  def_bonded  ("IDIHS",    "Improper Dih.",   4, 2, 2,  eNR_IMPROPER,idihs        ),
  def_bonded  ("PIDIHS",   "Improper Dih.",   4, 3, 3,  eNR_PROPER, pdihs         ),
  def_bondedt ("TABDIHS", "Tab. Dih.",        4, 2, 2,  eNR_TABDIHS, tab_dihs     ),
  def_bonded  ("CMAP",  "CMAP Dih.",          5, -1, -1,  eNR_CMAP,   unimplemented ),
  def_bonded  ("GB12",     "GB 1-2 Pol.",     2, 4, 0,  eNR_GB,     unimplemented ),
  def_bonded  ("GB13",     "GB 1-3 Pol.",     2, 4, 0,  eNR_GB,     unimplemented ),
Ejemplo n.º 2
0
    {str, lstr,    0,     0,     0, IF_NULL,                    -1, unimplemented}

/* this MUST correspond to the enum in src/gromacs/topology/idef.h */
const t_interaction_function interaction_function[F_NRE] =
{
    def_bond    ("BONDS",    "Bond",            2, 2, 2,  eNR_BONDS,  bonds         ),
    def_bond    ("G96BONDS", "G96Bond",         2, 2, 2,  eNR_BONDS,  g96bonds      ),
    def_bond    ("MORSE",    "Morse",           2, 3, 3,  eNR_MORSE,  morse_bonds   ),
    def_bond    ("CUBICBONDS", "Cubic Bonds",    2, 3, 0,  eNR_CUBICBONDS, cubic_bonds),
    def_bondnb  ("CONNBONDS", "Connect Bonds",   2, 0, 0,  0,      unimplemented     ),
    def_bonded  ("HARMONIC", "Harmonic Pot.",   2, 2, 2,  eNR_BONDS,  bonds         ),
    def_bondnb  ("FENEBONDS", "FENE Bonds",     2, 2, 0,  eNR_FENEBONDS, FENE_bonds ),
    def_bondt   ("TABBONDS", "Tab. Bonds",      2, 2, 2,  eNR_TABBONDS, tab_bonds   ),
    def_bondedtz("TABBONDSNC", "Tab. Bonds NC", 2, 2, 2,  eNR_TABBONDS, tab_bonds   ),
    def_bonded  ("RESTRAINTPOT", "Restraint Pot.", 2, 4, 4,  eNR_RESTRBONDS,  restraint_bonds ),
    def_angle   ("ANGLES",   "Angle",           3, 2, 2,  eNR_ANGLES, angles        ),
    def_angle   ("G96ANGLES", "G96Angle",        3, 2, 2,  eNR_ANGLES, g96angles     ),
    def_angle   ("RESTRANGLES", "Restricted Angles", 3, 2, 2,  eNR_ANGLES, restrangles),
    def_angle   ("LINEAR_ANGLES", "Lin. Angle", 3, 2, 2,  eNR_LINEAR_ANGLES, linear_angles ),
    def_bonded  ("CROSS_BOND_BOND", "Bond-Cross", 3, 3, 0, 0,          cross_bond_bond ),
    def_bonded  ("CROSS_BOND_ANGLE", "BA-Cross",   3, 4, 0, 0,          cross_bond_angle ),
    def_angle   ("UREY_BRADLEY", "U-B",          3, 4, 4,  0,          urey_bradley ),
    def_angle   ("QANGLES", "Quartic Angles",    3, 6, 0,  eNR_QANGLES, quartic_angles ),
    def_bondedt ("TABANGLES", "Tab. Angles",    3, 2, 2,  eNR_TABANGLES, tab_angles ),
    def_bonded  ("PDIHS",    "Proper Dih.",     4, 3, 3,  eNR_PROPER, pdihs         ),
    def_bonded  ("RBDIHS",   "Ryckaert-Bell.",  4, 6, 6,  eNR_RB, rbdihs            ),
    def_bonded  ("RESTRDIHS",  "Restricted Dih.",     4, 2, 2,  eNR_PROPER,  restrdihs),
    def_bonded  ("CBTDIHS",   "CBT Dih.",  4, 6, 6,  eNR_RB, cbtdihs            ),
    def_bonded  ("FOURDIHS", "Fourier Dih.",    4, 4, 4,  eNR_FOURDIH, rbdihs       ),
    def_bonded  ("IDIHS",    "Improper Dih.",   4, 2, 2,  eNR_IMPROPER, idihs        ),
    def_bonded  ("PIDIHS",   "Improper Dih.",   4, 3, 3,  eNR_IMPROPER, pdihs       ),