void HierarchyLoadLink::create_recursive(kernel::Model *m,
kernel::ParticleIndex root,
kernel::ParticleIndex cur,
RMF::NodeConstHandle name,
kernel::ParticleIndexes rigid_bodies,
Data &data) {
set_association(name, m->get_particle(cur));
unsigned int state = get_coords_state(name, intermediate_particle_factory_,
reference_frame_factory_);
data.load_static.setup_particle(name, m, cur, rigid_bodies);
data.load_local_coordinates.setup_particle(name, state, m, cur, rigid_bodies);
data.load_static_coordinates.setup_particle(name, state, m, cur,
rigid_bodies);
data.load_global_coordinates.setup_particle(name, state, m, cur,
rigid_bodies);
if (core::RigidBody::get_is_setup(m, cur)) {
rigid_bodies.push_back(cur);
}
RMF::NodeConstHandles ch = name.get_children();
for (unsigned int i = 0; i < ch.size(); ++i) {
if (ch[i].get_type() == RMF::REPRESENTATION) {
kernel::ParticleIndex child = m->add_particle(ch[i].get_name());
atom::Hierarchy(m, cur)
.add_child(atom::Hierarchy::setup_particle(m, child));
create_recursive(m, root, child, ch[i], rigid_bodies, data);
}
}
do_setup_particle(m, root, cur, name);
}
IMPATOM_BEGIN_NAMESPACE
void CenterOfMass::do_setup_particle(Model *m,
ParticleIndex pi,
const ParticleIndexes &pis)
{
Refiner *refiner = new core::FixedRefiner(IMP::get_particles(m, pis));
do_setup_particle(m, pi, refiner);
}
