ReadEnds(
::libmaus2::bambam::BamAlignment const & p,
header_type const & header,
bool const copyAlignment = false,
uint64_t const rtagId = 0
)
{
reset();
fillFrag(p,header,*this,rtagId);
if ( copyAlignment )
this->p = p.sclone();
}
ReadEnds(
::libmaus::bambam::BamAlignment const & p,
::libmaus::bambam::BamHeader const & header,
::libmaus::bambam::ReadEnds & RE,
bool const copyAlignment = false
)
{
reset();
fillFrag(p,header,RE);
if ( copyAlignment )
this->p = p.sclone();
}
ReadEnds(
uint8_t const * pD,
uint64_t const pblocksize,
header_type const & header,
bool const copyAlignment = false,
uint64_t const rtagId = 0
)
{
reset();
fillFrag(pD,pblocksize,header,*this,rtagId);
if ( copyAlignment )
{
BamAlignment::shared_ptr_type salgn(new libmaus2::bambam::BamAlignment);
salgn->copyFrom(pD,pblocksize);
this->p = salgn;
}
}
