boolean protcdna_ascii_display(AlnBlock * alb,char * protsequence,char * protname,int protoff,cDNA * cdna,CodonTable * ct,int name,int main,boolean mult,FILE * ofp)
{
boolean ret;
btCanvas * btc;
btc = new_Ascii_btCanvas(ofp,name+6,main,0,6);
ret = protdna_btc_display(alb,protsequence,protname,protoff,cdna->baseseq,ct,name,main,btc,match_central_line_std,mult);
free_btCanvas(btc);
return ret;
}
boolean write_pretty_str_align(AlnBlock * alb,char * qname,char * query,char * tname,char * target,int name,int main,FILE * ofp)
{
boolean out;
btCanvas * btc;
btc = new_Ascii_btCanvas(ofp,name+6,main,0,3); /*+6 in case we want to put in numbers */
out = write_pretty_str_align_btc(alb,qname,query,tname,target,btc);
/** destroy btc canvas **/
free_btCanvas(btc);
return out;
}
void print_hsp(gpointer key,gpointer value,gpointer user_data)
{
Sequence * query;
HSPset * set;
btCanvas * btc;
btPasteArea * btp;
int i,j;
char q,t;
query = (Sequence *)user_data;
set = (HSPset *) value;
btc = new_Ascii_btCanvas(stdout,12,50,5,3);
for(i=0;i<set->len;i++) {
for(j=0;j<set->hsp[i]->length;) {
btp = get_reserved_left_btCanvas(btc);
paste_string_btPasteArea(btp,0,0,query->name,BC_RIGHT,0);
paste_string_btPasteArea(btp,0,2,set->hsp[i]->target->name,BC_RIGHT,0);
free_btPasteArea(btp);
for(;j<set->hsp[i]->length && can_get_paste_area_btCanvas(btc,1) == TRUE;j++) {
btp = get_paste_area_btCanvas(btc,1);
q = query->seq[set->hsp[i]->query_start+j];
t = set->hsp[i]->target->seq[set->hsp[i]->target_start+j];
paste_char_btPasteArea(btp,0,0,q,0);
paste_char_btPasteArea(btp,0,2,t,0);
if( q == t ) {
paste_char_btPasteArea(btp,0,1,t,0);
}
free_btPasteArea(btp);
}
advance_line_btCanvas(btc);
}
advance_line_btCanvas(btc);
}
free_btCanvas(btc);
}
boolean write_pretty_seq_align(AlnBlock * alb,Sequence * q,Sequence * t,int name,int main,FILE * ofp)
{
char qname[64];
char tname[64];
btCanvas * btc;
if( alb == NULL || q == NULL || t == NULL ) {
warn("NULL objects being passed into write_pretty_seq_align");
return FALSE;
}
if( name > 64 ) {
warn("Sorry - hard coded limited, can't have names longer than 64");
return FALSE;
}
if( strlen(q->name) > name ) {
warn("Name %s is longer than allowed name block (%d). Truncating\n",q->name,name);
strncpy(qname,q->name,name);
qname[name] = '\0';
} else {
strcpy(qname,q->name);
}
if( strlen(t->name) > name ) {
warn("Name %s is longer than allowed name block (%d). Truncating\n",t->name,name);
strncpy(tname,t->name,name);
tname[name] = '\0';
} else {
strcpy(tname,t->name);
}
btc = new_Ascii_btCanvas(ofp,name+6,main,0,3); /*+6 in case we want to put in numbers */
write_pretty_str_align_btc(alb,qname,q->seq,tname,t->seq,btc);
/** destroy btc canvas **/
free_btCanvas(btc);
return TRUE;
}
