void
Model::dealWithModelUnits()
{
UnitRefsFilter filter;
List * elements = getAllElements(&filter);
unsigned int n = 0;
unsigned int num = elements->getSize();
if (isSetVolumeUnits())
{
std::string volume = getVolumeUnits();
// if in an L3 model a user used volume as an id of a UnitDefinition
// but they declared the volume units of teh model to be something
// else then the UD with id volume is nothing to do with the
// L2 interpretation of volume
// so replace that UD and all references to it
if (volume != "volume")
{
UnitDefinition * existingUD = removeUnitDefinition("volume");
if (existingUD != NULL)
{
std::string newSubsName = "volumeFromOriginal";
existingUD->setId(newSubsName);
SBase* obj;
for (n = 0; n < num; n++)
{
obj = (SBase*)(elements->get(n));
obj->renameUnitSIdRefs("volume", newSubsName);
}
addUnitDefinition(existingUD);
}
}
UnitDefinition * ud = getUnitDefinition(volume) != NULL ?
getUnitDefinition(volume)->clone() : NULL;
if (ud != NULL)
{
ud->setId("volume");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(volume.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("volume");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetAreaUnits())
{
std::string area = getAreaUnits();
// if in an L3 model a user used area as an id of a UnitDefinition
// but they declared the area units of teh model to be something
// else then the UD with id area is nothing to do with the
// L2 interpretation of area
// so replace that UD and all references to it
if (area != "area")
{
UnitDefinition * existingUD = removeUnitDefinition("area");
if (existingUD != NULL)
{
std::string newSubsName = "areaFromOriginal";
existingUD->setId(newSubsName);
SBase* obj;
for (n = 0; n < num; n++)
{
obj = (SBase*)(elements->get(n));
obj->renameUnitSIdRefs("area", newSubsName);
}
addUnitDefinition(existingUD);
}
}
UnitDefinition * ud = getUnitDefinition(area) != NULL ?
getUnitDefinition(area)->clone() : NULL;
if (ud != NULL)
{
ud->setId("area");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(area.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("area");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetLengthUnits())
{
std::string length = getLengthUnits();
// if in an L3 model a user used length as an id of a UnitDefinition
// but they declared the length units of teh model to be something
// else then the UD with id length is nothing to do with the
// L2 interpretation of length
// so replace that UD and all references to it
if (length != "length")
{
UnitDefinition * existingUD = removeUnitDefinition("length");
if (existingUD != NULL)
{
std::string newSubsName = "lengthFromOriginal";
existingUD->setId(newSubsName);
SBase* obj;
for (n = 0; n < num; n++)
{
obj = (SBase*)(elements->get(n));
obj->renameUnitSIdRefs("length", newSubsName);
}
addUnitDefinition(existingUD);
}
}
UnitDefinition * ud = getUnitDefinition(length) != NULL ?
getUnitDefinition(length)->clone() : NULL;
if (ud != NULL)
{
ud->setId("length");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(length.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("length");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetSubstanceUnits())
{
std::string substance = getSubstanceUnits();
// if in an L3 model a user used substance as an id of a UnitDefinition
// but they declared the substance units of teh model to be something
// else then the UD with id substance is nothing to do with the
// L2 interpretation of substance
// so replace that UD and all references to it
if (substance != "substance")
{
UnitDefinition * existingUD = removeUnitDefinition("substance");
if (existingUD != NULL)
{
std::string newSubsName = "substanceFromOriginal";
existingUD->setId(newSubsName);
SBase* obj;
for (n = 0; n < num; n++)
{
obj = (SBase*)(elements->get(n));
obj->renameUnitSIdRefs("substance", newSubsName);
}
addUnitDefinition(existingUD);
}
}
UnitDefinition * ud = getUnitDefinition(substance) != NULL ?
getUnitDefinition(substance)->clone() : NULL;
if (ud != NULL)
{
ud->setId("substance");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(substance.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("substance");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetTimeUnits())
{
std::string time = getTimeUnits();
// if in an L3 model a user used time as an id of a UnitDefinition
// but they declared the time units of teh model to be something
// else then the UD with id time is nothing to do with the
// L2 interpretation of time
// so replace that UD and all references to it
if (time != "time")
{
UnitDefinition * existingUD = removeUnitDefinition("time");
if (existingUD != NULL)
{
std::string newSubsName = "timeFromOriginal";
existingUD->setId(newSubsName);
SBase* obj;
for (n = 0; n < num; n++)
{
obj = (SBase*)(elements->get(n));
obj->renameUnitSIdRefs("time", newSubsName);
}
addUnitDefinition(existingUD);
}
}
UnitDefinition * ud = getUnitDefinition(time) != NULL ?
getUnitDefinition(time)->clone() : NULL;
if (ud != NULL)
{
ud->setId("time");
}
else
{
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("time");
Unit *u = ud->createUnit();
u->initDefaults();
u->setKind(UnitKind_forName(time.c_str()));
}
addUnitDefinition(ud);
}
}
void
Model::dealWithModelUnits()
{
if (isSetVolumeUnits())
{
std::string volume = getVolumeUnits();
UnitDefinition * ud = removeUnitDefinition(volume);
if (ud != NULL)
{
ud->setId("volume");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(volume.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("volume");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetAreaUnits())
{
std::string area = getAreaUnits();
UnitDefinition * ud = removeUnitDefinition(area);
if (ud != NULL)
{
ud->setId("area");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(area.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("area");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetLengthUnits())
{
std::string length = getLengthUnits();
UnitDefinition * ud = removeUnitDefinition(length);
if (ud != NULL)
{
ud->setId("length");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(length.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("length");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetSubstanceUnits())
{
std::string substance = getSubstanceUnits();
UnitDefinition * ud = removeUnitDefinition(substance);
if (ud != NULL)
{
ud->setId("substance");
}
else
{
Unit *u = new Unit(getSBMLNamespaces());
u->initDefaults();
u->setKind(UnitKind_forName(substance.c_str()));
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("substance");
ud->addUnit(u);
}
addUnitDefinition(ud);
}
if (isSetTimeUnits())
{
std::string time = getTimeUnits();
UnitDefinition * ud = removeUnitDefinition(time);
if (ud != NULL)
{
ud->setId("time");
}
else
{
ud = new UnitDefinition(getSBMLNamespaces());
ud->setId("time");
Unit *u = ud->createUnit();
u->initDefaults();
u->setKind(UnitKind_forName(time.c_str()));
}
addUnitDefinition(ud);
}
}