vector<floatType> FeatureExtract::getFeature(Mat src){
getHist(src);
vector<floatType> feature;
for (int i=0; i <= X/CELL - BLOCK; i+=STRIDE)
for (int j=0; j <= Y/CELL - BLOCK; j+=STRIDE){
floatType len = EPS;
for (int s=0; s<BLOCK; ++s)
for (int t=0; t<BLOCK; ++t)
for (int r=0; r<BIN; ++r)
len += SQR(hist[i+s][j+t][r]);
len = sqrt(len);
for (int s=0; s<BLOCK; ++s)
for (int t=0; t<BLOCK; ++t){
for (int r=0; r<BIN; ++r){
feature.push_back(hist[i+s][j+t][r]/len);
}
}
}
return feature;
}
void plotSpectraMin() {
vector<TH1F*> hists;
for(int i = 0; i < fileNames.size(); i++) {
hists.push_back(getHist(fileNames[i]));
}
TLegend * leg = new TLegend(0.60, 0.70, 0.88, 0.88);
leg->SetHeader("LED Pulse Width");
for(int i =0; i < hists.size(); i++) {
hists[i]->SetLineColor(i+1);
hists[i]->SetLineWidth(2);
//hists[i]->Sumw2();
hists[i]->Draw("SAME");
leg->AddEntry(hists[i], (TString)leg_entries[i]);
}
hists[hists.size()-1]->SetLineColor(hists.size()+1);
hists[hists.size()-1]->SetTitle("PMT Spectra with Varying LED Pulse Width");
hists[hists.size()-1]->GetXaxis()->SetTitle("Integrated Charge / (pC)");
hists[hists.size()-1]->GetYaxis()->SetTitle("Events");
hists[hists.size()-1]->GetYaxis()->SetRangeUser(0.5, 20000);
gStyle->SetOptStat(0);
leg->Draw();
}
//------------------------------------------//
// Format amplitude plots
//------------------------------------------//
void npulsePlot(TFile* file, vector<TString> filters)
{
// Specify the titles
TString xtitle = "Number of Pulses";
TString ytitle = "Entries";
// Histogram name
TString pname = "h_npulse";
// Create canvas
TCanvas* c = makeCanvas("c");
// Make legend
TLegend* leg = makeLegend(0.7,0.8,0.6,0.9);
//TLegend* leg = makeLegend(0.7,0.8,0.8,0.9);
// Loop and plot
TH1* hist[6];
float maximum = -999;
for(unsigned int i=0; i<filters.size(); ++i){
TString filter = filters.at(i);
hist[i] = getHist(file,pname+"_"+filter,xtitle,ytitle,
m_colors[i], m_markers[i]);
leg->AddEntry(hist[i],(filter+"%").Data(),"l");
if( maximum < hist[i]->GetMaximum() )
maximum = hist[i]->GetMaximum();
}// end loop over filters
/*
for(unsigned int i=0; i<filters.size(); ++i){
leg->Clear();
leg->SetHeader("Filter");
leg->AddEntry(hist[i],(filters.at(i)+"%").Data(),"l");
hist[i]->Draw();
leg->Draw("same");
c->SaveAs((savedir+"npulse_filter"+filters.at(i)+".png").Data());
}
return;
*/
// Set maximum correctly
hist[0]->SetMaximum(1.1*maximum);
hist[0]->Draw();
for(unsigned int i=1; i<filters.size(); ++i){
hist[i]->Draw("same");
}
// Draw legend
leg->SetHeader("Filter");
leg->Draw("same");
c->SaveAs((savedir+"npulse_perLumi.png").Data());
}
double getHistEntriesSumDiffFiles( vector<TFile*> vf, TString dirname, TString hname, vector<int> binrange, double scale ){
double entries=0;
for( unsigned int ifile=0; ifile < vf.size(); ifile++ ){
TH1D *h = getHist(vf[ifile], dirname, hname);
entries = entries + getHistEntries( h, binrange, scale );
}
return entries;
}
void setPrefixAndRegisterAsTemp(std::string const & prefix, uint64_t const numbwt, uint64_t const numgt)
{
setPrefix(prefix, numbwt, numgt);
for ( uint64_t i = 0; i < getGT().size(); ++i )
::libmaus2::util::TempFileRemovalContainer::addTempFile(getGT()[i]);
for ( uint64_t i = 0; i < getBWT().size(); ++i )
::libmaus2::util::TempFileRemovalContainer::addTempFile(getBWT()[i]);
::libmaus2::util::TempFileRemovalContainer::addTempFile(getHWT());
::libmaus2::util::TempFileRemovalContainer::addTempFile(getHist());
::libmaus2::util::TempFileRemovalContainer::addTempFile(getSampledISA());
}
void makeDatacard(double mh, int nbins, double xmin, double xmax, std::string cat, int order) {
std::vector<std::string> datpaths;
std::vector<std::string> bkgpaths;
std::vector<std::string> sigpaths;
datpaths.push_back("/media/Disk1/avartak/CMS/Data/Dileptons/DoubleMuon/trim.root");
bkgpaths.push_back("/media/Disk1/avartak/CMS/Data/Dileptons/DYJetsToLL_M-10to50_TuneCUETP8M1_13TeV-amcatnloFXFX-pythia8/trim.root");
bkgpaths.push_back("/media/Disk1/avartak/CMS/Data/Dileptons/DYJetsToLL_M-50_TuneCUETP8M1_13TeV-amcatnloFXFX-pythia8/trim.root");
bkgpaths.push_back("/media/Disk1/avartak/CMS/Data/Dileptons/TTJets_DiLept_TuneCUETP8M1_13TeV-madgraphMLM-pythia8/trim.root");
std::stringstream sigfname_ss;
sigfname_ss << "/media/Disk1/avartak/CMS/Data/Dileptons/DarkPhoton/trim_M" << int(mh) << ".root";
sigpaths.push_back(sigfname_ss.str().c_str());
TH1F* sighist = new TH1F("sighist", "", nbins, xmin, xmax);
TH1F* bkghist = new TH1F("bkghist", "", nbins, xmin, xmax);
TH1F* dathist = new TH1F("dathist", "", nbins, xmin, xmax);
getHist(sigpaths, sighist, cat);
getHist(bkgpaths, bkghist, cat);
getHist(datpaths, dathist, cat);
sighist->Scale(1./400.);
if (order < 0) order = getBestOrder(bkghist, mh, nbins, xmin, xmax, cat);
std::map<std::string, double> sparams = fit("sig", sighist, mh, "signal", 2 , true);
std::map<std::string, double> bparams = fit("dat", bkghist, mh, "bkgpol", order, true);
std::cout << "Best polynomial order : " << order << std::endl;
makeWorkspace(mh, dathist, sparams, bparams, cat);
delete sighist;
delete bkghist;
delete dathist;
}
yarp::sig::Matrix parzenWindowEstimator::getHist()
{
yarp::sig::Matrix Hist(binsNum[0],binsNum[1]);
Hist.zero();
for (size_t i = 0; i < binsNum[0]; i++)
{
for (size_t j = 0; j < binsNum[1]; j++)
{
Hist(i,j)=getHist(i,j);
}
}
return Hist;
}
//------------------------------------------//
// Basic plot
//------------------------------------------//
void basicPlot(TFile* file)
{
// There are three basic plots to make
vector<TString> pnames;
pnames.push_back("amp");
pnames.push_back("npulse");
pnames.push_back("tDiff");
pnames.push_back("maxTDiff");
// Set x-titles
vector<TString> xtitles;
xtitles.push_back("Amplitude [V]");
xtitles.push_back("Number of Pulses");
xtitles.push_back("LEtime - wavetime [ns]");
xtitles.push_back("Max(LEtime - wavetime) [ns]");
// Only one ytitle
TString ytitle = "Entries";
// Make Canvas
TCanvas* c = makeCanvas("c");
// Loop and plot
TH1* hist = NULL;
for(unsigned int i=0; i<pnames.size(); ++i){
// Get Hist
TString pname = "h_"+pnames.at(i);
hist = getHist(file,pname,xtitles[i],ytitle,kBlack,20);
// Plot
hist->Draw();
// Save
c->SaveAs((savedir+pnames[i]+"_total.png").Data());
}// end loop
delete hist;
delete c;
}
//------------------------------------------//
// Format amplitude plots
//------------------------------------------//
void ampPlot(TFile* file, vector<TString> filters)
{
// Specify the titles
TString xtitle = "Amplitude [v]";
TString ytitle = "Entries";
// Histogram name
TString pname = "h_amp";
// Create canvas
TCanvas* c = makeCanvas("c");
c->SetLogx();
c->SetLogy();
// Make legend
TLegend* leg = makeLegend(0.7,0.8,0.8,0.9);
// Loop and plot
TH1* hist = NULL;
for(unsigned int i=0; i<filters.size(); ++i){
leg->Clear();
leg->SetHeader("Filter");
TString filter = filters.at(i);
hist = getHist(file,pname+"_"+filter,xtitle,ytitle,
m_colors[i], m_markers[i]);
leg->AddEntry(hist,(filter+"%").Data(),"l");
hist->Draw();
// Draw legend
leg->Draw("same");
c->SaveAs((savedir+"amp_filter"+filter+".png").Data());
}// end loop over filters
}
//------------------------------------------//
// Plotting the maximum time difference
// for the maximum amplitude wave
//------------------------------------------//
void tDiffMaxPlotForMaxV(TFile* file, vector<TString> filters)
{
// Specify the titles
TString xtitle = "Max(LEtime - wavetime) [ns]";
TString ytitle = "Entries";
// Histogram name
TString pname = "h_maxTDiff_forMaxV";
// Create canvas
TCanvas* c = makeCanvas("c");
//c->SetLogy();
// Make legend
TLegend* leg = makeLegend(0.7,0.8,0.8,0.9);
// Loop and plot
TH1* hist = NULL;
for(unsigned int i=0; i<filters.size(); ++i){
leg->Clear();
leg->SetHeader("Filter");
TString filter = filters.at(i);
hist = getHist(file,pname+"_"+filter,xtitle,ytitle,
m_colors[i], m_markers[i]);
leg->AddEntry(hist,(filter+"%").Data(),"l");
hist->Draw();
// Draw legend
leg->Draw("same");
// Save
//c->SaveAs((savedir+"maxTimeDiff_filter"+filter+"_nonlog.png").Data());
//c->SaveAs((savedir+"maxTimeDiff_cutOnCounter_filter"+filter+"_nonlog.png").Data());
}// end loop over filters
}
void QuickFeatureExtract::init(Mat src){
getHist(src);
}