std::string RectangleShape::asString() const
{
std::ostringstream os;
os << Shape::asString() << ", ";
os << "centre: " << Shape2DUtils::asString(centre) << ", ";
os << "size: " << Shape2DUtils::asString(size) << ", ";
os << "title: " << title << ", ";
os << "titleSize: " << Shape2DUtils::asString(titleSize) << ", ";
os << "borderWidth: " << borderWidth << ", ";
os << "spacing: " << spacing << ", ";
os << "modelObject: " << (getModelObject() ? getModelObject()->asString() : "none");
return os.str();
}
std::string CLGraphicalObject::getModelObjectName() const
{
CCopasiObject * tmp = getModelObject();
if (tmp)
return tmp->getObjectName();
else
return "";
}
void CLReactionGlyph::exportToSBML(ReactionGlyph * g,
const std::map<const CCopasiObject*, SBase*> & copasimodelmap,
std::map<std::string, const SBase*>& sbmlIDs,
std::map<const CLBase*, const SBase*> & layoutmap) const
{
if (!g) return;
//call the coresponding method of the base class
CLGraphicalObject::exportToSBML(g, copasimodelmap, sbmlIDs);
//reference to model objects
CCopasiObject* tmp = getModelObject();
if (tmp)
{
std::map<const CCopasiObject*, SBase*>::const_iterator it = copasimodelmap.find(tmp);
if (it != copasimodelmap.end())
{
if (it->second)
g->setReactionId(it->second->getId());
}
}
//curve
mCurve.exportToSBML(g->getCurve(), copasimodelmap);
//Metab reference glyphs
size_t i, imax = mvMetabReferences.size();
for (i = 0; i < imax; ++i)
{
CLMetabReferenceGlyph * tmp = mvMetabReferences[i];
//check if the glyph exists in the libsbml data
std::map<const CCopasiObject*, SBase*>::const_iterator it;
it = copasimodelmap.find(tmp);
SpeciesReferenceGlyph * pG;
if (it == copasimodelmap.end()) //not found
{
pG = new SpeciesReferenceGlyph;
g->getListOfSpeciesReferenceGlyphs()->appendAndOwn(pG);
}
else
{
pG = dynamic_cast<SpeciesReferenceGlyph*>(it->second);
}
layoutmap.insert(std::pair<const CLBase*, const SBase*>(tmp, pG));
tmp->exportToSBML(pG, copasimodelmap, sbmlIDs, layoutmap);
}
}
std::string CLGraphicalObject::getModelObjectDisplayName(bool /* regular */, bool /* richtext */) const
{
CCopasiObject * tmp = getModelObject();
if (tmp)
{
return tmp->getObjectName();
}
else
{
return "";
}
}
boost::optional<IddObjectType> OSDocument::getIddObjectType(const OSItemId& itemId) const
{
if (fromBCL(itemId)){
boost::optional<BCLComponent> component = LocalBCL::instance().getComponent(itemId.itemId().toStdString());
if (component){
BOOST_FOREACH(const Attribute& attribute, component->attributes()){
if (istringEqual("OpenStudio Type", attribute.name())){
try{
IddObjectType iddObjectType(attribute.valueAsString());
return iddObjectType;
}catch(...){
}
}
}
}
}
boost::optional<model::ModelObject> modelObject = getModelObject(itemId);
if (modelObject){
return modelObject->iddObjectType();
}
return boost::none;
}
WayPointPtr WayPointShape::getWayPoint() const
{
return std::dynamic_pointer_cast<WayPoint>(getModelObject());
}
void CLGeneralGlyph::exportToSBML(GraphicalObject * g, //TODO
const std::map<const CCopasiObject*, SBase*> & copasimodelmap,
std::map<std::string, const SBase*>& sbmlIDs,
std::map<const CLBase*, const SBase*> & layoutmap) const
{
if (!g) return;
//call the coresponding method of the base class
CLGraphicalObject::exportToSBML(g, copasimodelmap, sbmlIDs);
#if LIBSBML_VERSION >= 50800
GeneralGlyph *general = dynamic_cast<GeneralGlyph *>(g);
if (!general) return;
//reference to model objects
CCopasiObject* tmp = getModelObject();
if (tmp)
{
std::map<const CCopasiObject*, SBase*>::const_iterator it = copasimodelmap.find(tmp);
if (it != copasimodelmap.end())
{
if (it->second)
general->setReferenceId(it->second->getId());
}
const CLBase* base = dynamic_cast<const CLBase*>(tmp);
if (base)
{
std::map<const CLBase*, const SBase*>::const_iterator it2 = layoutmap.find(base);
if (it2 != layoutmap.end())
{
if (it2->second)
general->setReferenceId(it2->second->getId());
}
}
}
//curve
mCurve.exportToSBML(general->getCurve(), copasimodelmap);
//reference glyphs
size_t i, imax = mvReferences.size();
for (i = 0; i < imax; ++i)
{
CLReferenceGlyph * tmp = mvReferences[i];
//check if the glyph exists in the libsbml data
std::map<const CCopasiObject*, SBase*>::const_iterator it;
it = copasimodelmap.find(tmp);
ReferenceGlyph * pG;
if (it == copasimodelmap.end()) //not found
{
pG = general->createReferenceGlyph();
}
else
{
pG = dynamic_cast<ReferenceGlyph*>(it->second);
}
layoutmap.insert(std::pair<const CLBase*, const SBase*>(tmp, pG));
tmp->exportToSBML(pG, copasimodelmap, sbmlIDs, layoutmap);
}
imax = mvSubglyphs.size();
for (i = 0; i < imax; ++i)
{
CLGraphicalObject * tmp = mvSubglyphs[i];
CLMetabGlyph * metab = dynamic_cast<CLMetabGlyph*>(tmp);
CLCompartmentGlyph* comp = dynamic_cast<CLCompartmentGlyph*>(tmp);
CLGeneralGlyph* gg = dynamic_cast<CLGeneralGlyph*>(tmp);
CLTextGlyph* text = dynamic_cast<CLTextGlyph*>(tmp);
//check if the glyph exists in the libsbml data
std::map<const CCopasiObject*, SBase*>::const_iterator it;
it = copasimodelmap.find(tmp);
GraphicalObject * pG;
if (it == copasimodelmap.end()) //not found
{
if (metab)
pG = ((Layout*)g->getParentSBMLObject()->getParentSBMLObject())->createSpeciesGlyph();
else if (comp)
pG = ((Layout*)g->getParentSBMLObject()->getParentSBMLObject())->createCompartmentGlyph();
else if (gg)
pG = ((Layout*)g->getParentSBMLObject()->getParentSBMLObject())->createGeneralGlyph();
else if (text)
pG = ((Layout*)g->getParentSBMLObject()->getParentSBMLObject())->createTextGlyph();
else
pG = ((Layout*)g->getParentSBMLObject()->getParentSBMLObject())->createAdditionalGraphicalObject();
}
else
{
pG = dynamic_cast<GraphicalObject*>(it->second);
}
layoutmap.insert(std::pair<const CLBase*, const SBase*>(tmp, pG));
if (metab)
metab->exportToSBML(static_cast<SpeciesGlyph*>(pG), copasimodelmap, sbmlIDs);
else if (comp)
comp->exportToSBML(static_cast<CompartmentGlyph*>(pG), copasimodelmap, sbmlIDs);
else if (text)
text->exportToSBML(static_cast<TextGlyph*>(pG), copasimodelmap, sbmlIDs);
else if (gg)
gg->exportToSBML(pG, copasimodelmap, sbmlIDs, layoutmap);
else
tmp->exportToSBML(pG, copasimodelmap, sbmlIDs);
}
#endif // LIBSBML_VERSION >= 50800
}
